Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 1.4e-84 316.2 158 100.0
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 4.1e-68 261.5 158 78.5
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 5.3e-68 261.2 158 76.6
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 1.5e-67 259.6 158 78.5
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 2.0e-67 259.2 158 76.6
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 4.5e-67 258.1 158 75.9
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 7.7e-67 257.3 158 76.6
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 7.7e-67 257.3 158 74.7
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 2.2e-66 255.8 158 74.7
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 5.0e-66 254.6 155 76.8
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 6.5e-66 254.2 158 74.7
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 8.5e-66 253.8 158 77.2
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 8.5e-66 253.8 157 73.2
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 8.5e-66 253.8 155 74.8
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 1.1e-65 253.4 148 78.4
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 1.1e-65 253.4 157 73.2
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 1.4e-65 253.1 158 75.9
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 1.9e-65 252.7 158 73.4
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 2.5e-65 252.3 158 75.3
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 4.2e-65 251.5 152 77.0
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 5.5e-65 251.1 155 73.5
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 7.2e-65 250.8 155 76.1
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 1.2e-64 250.0 152 77.0
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 1.6e-64 249.6 158 72.2
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 1.6e-64 249.6 158 75.3
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 1.6e-64 249.6 158 75.3
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 1.6e-64 249.6 146 79.5
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 4.7e-64 248.1 158 72.2
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 4.7e-64 248.1 143 79.0
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 4.7e-64 248.1 152 77.0
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 6.1e-64 247.7 158 72.2
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 6.1e-64 247.7 158 72.2
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 6.1e-64 247.7 151 75.5
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 6.1e-64 247.7 155 72.9
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 7.9e-64 247.3 158 75.3
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 7.9e-64 247.3 158 75.3
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 7.9e-64 247.3 154 72.7
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 7.9e-64 247.3 152 76.3
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 1.0e-63 246.9 155 74.2
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 1.4e-63 246.5 158 70.3
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 1.8e-63 246.1 153 73.2
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 2.3e-63 245.7 155 73.5
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 2.3e-63 245.7 147 79.6
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 2.3e-63 245.7 152 74.3
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 3.0e-63 245.4 158 70.3
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 3.0e-63 245.4 152 75.0
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 5.1e-63 244.6 158 72.8
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 8.8e-63 243.8 146 76.0
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 8.8e-63 243.8 151 71.5
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 1.1e-62 243.4 158 74.1
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 1.1e-62 243.4 147 74.8
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 2.0e-62 242.7 158 74.1
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 2.6e-62 242.3 158 70.9
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 3.3e-62 241.9 158 69.0
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 3.3e-62 241.9 146 76.0
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 3.3e-62 241.9 155 74.2
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 5.7e-62 241.1 155 71.0
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 5.7e-62 241.1 153 72.5
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 5.7e-62 241.1 143 78.3
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 1.7e-61 239.6 158 69.6
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 2.2e-61 239.2 153 71.2
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 2.8e-61 238.8 151 72.8
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 2.8e-61 238.8 147 75.5
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 4.8e-61 238.0 149 73.8
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 6.3e-61 237.7 150 71.3
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 8.2e-61 237.3 151 72.8
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 8.2e-61 237.3 149 73.8
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 8.2e-61 237.3 158 69.0
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 1.1e-60 236.9 149 73.8
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 2.4e-60 235.7 153 69.9
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 3.1e-60 235.3 152 72.4
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 4.1e-60 235.0 150 72.7
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 4.1e-60 235.0 147 72.1
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 5.3e-60 234.6 158 68.4
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 9.1e-60 233.8 153 70.6
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 1.2e-59 233.4 153 70.6
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 1.2e-59 233.4 149 72.5
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 5.9e-59 231.1 153 69.9
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 7.7e-59 230.7 153 69.9
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 1.0e-58 230.3 157 69.4
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 1.0e-58 230.3 155 66.5
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 1.9e-57 226.1 138 75.4
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 4.2e-57 224.9 160 67.5
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 5.5e-57 224.6 147 70.1
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 5.5e-57 224.6 148 67.6
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 9.4e-57 223.8 140 72.9
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 2.1e-56 222.6 155 69.0
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 2.7e-56 222.2 155 68.4
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 1.0e-55 220.3 146 72.6
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 1.0e-55 220.3 155 67.7
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 4.0e-55 218.4 149 69.8
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 1.1e-54 216.9 151 69.5
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 1.5e-54 216.5 151 68.9
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 2.0e-54 216.1 151 68.9
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 2.6e-54 215.7 146 69.9
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 2.6e-54 215.7 151 68.2
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 1.3e-53 213.4 151 67.5
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 2.8e-53 212.2 151 66.2
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 3.7e-53 211.8 151 66.2
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 1.4e-52 209.9 151 66.2
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 2.4e-52 209.1 151 66.2
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 2.4e-52 209.1 151 66.2
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 4.1e-52 208.4 150 65.3
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 4.1e-52 208.4 151 64.2
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 4.1e-52 208.4 151 64.2
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 9.1e-52 207.2 141 69.5
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 1.2e-51 206.8 155 61.3
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 2.0e-51 206.1 146 67.1
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 5.9e-51 204.5 150 62.0
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 2.9e-50 202.2 127 76.4
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 1.6e-48 196.4 143 62.9
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 4.7e-48 194.9 152 59.9
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 2.3e-47 192.6 151 63.6
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 2.0e-46 189.5 123 72.4
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.7e-42 176.4 122 68.0
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 2.1e-40 169.5 110 73.6
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 4.7e-40 168.3 147 52.4
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 5.2e-39 164.9 99 75.8
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 8.8e-39 164.1 144 54.9
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 2.0e-38 162.9 153 49.0
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 2.0e-38 162.9 130 56.9
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 2.8e-37 159.1 143 53.8
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 1.1e-36 157.1 143 54.5
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 2.7e-35 152.5 135 57.0
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 3.8e-34 148.7 97 71.1
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 4.3e-33 145.2 100 67.0
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 2.3e-31 139.4 143 49.7
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 2.9e-29 132.5 147 47.6
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 8.3e-29 131.0 142 47.9
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 4.0e-23 112.1 153 40.5
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 4.0e-23 112.1 147 41.5
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 3.4e-22 109.0 90 56.7
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 5.8e-22 108.2 85 58.8
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 2.9e-21 105.9 90 55.6


User provided reference genes

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