Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1614 Punica granatum HOM05D007539 ORTHO05D009315 6.2e-118 427.6 229 100.0
Manes.08G015800 Manihot esculenta HOM05D007539 ORTHO05D009315 5.9e-84 314.7 232 69.4
Duzib093G0735 Durio zibethinus HOM05D007539 ORTHO05D009315 9.4e-82 307.4 233 74.2
Eucgr.K02419 Eucalyptus grandis HOM05D007539 ORTHO05D009315 3.6e-81 305.4 244 68.9
Eucgr.K02422 Eucalyptus grandis HOM05D007539 ORTHO05D009315 6.1e-81 304.7 168 85.1
COL.COLO4_22255 Corchorus olitorius HOM05D007539 ORTHO05D009315 1.4e-80 303.5 234 73.1
Cc06_g04790 Coffea canephora HOM05D007539 ORTHO05D009315 1.8e-80 303.1 170 81.8
Sc20g0005850 Simmondsia chinensis HOM05D007539 ORTHO05D009315 3.9e-80 302.0 197 74.1
Thecc.05G075600 Theobroma cacao HOM05D007539 ORTHO05D009315 3.9e-80 302.0 167 84.4
Cfa016483 Carpinus fangiana HOM05D007539 ORTHO05D009315 5.1e-80 301.6 167 84.4
Nn2g13907 Nelumbo nucifera HOM05D007539 ORTHO05D009315 2.6e-79 299.3 197 74.1
Ciclev10009520m.g Citrus clementina HOM05D007539 ORTHO05D009315 4.4e-79 298.5 193 74.6
TWI74G0011 Tripterygium wilfordii HOM05D007539 ORTHO05D009315 4.4e-79 298.5 207 72.0
Dinv37358 Davidia involucrata HOM05D007539 ORTHO05D009315 9.7e-79 297.4 193 74.6
MELO3C009408.2 Cucumis melo HOM05D007539 ORTHO05D009315 1.7e-78 296.6 167 83.2
PGSC0003DMG400008599 Solanum tuberosum HOM05D007539 ORTHO05D009315 2.2e-78 296.2 195 73.3
Gorai.009G410900 Gossypium raimondii HOM05D007539 ORTHO05D009315 2.8e-78 295.8 168 83.9
QL07p041368 Quercus lobata HOM05D007539 ORTHO05D009315 2.8e-78 295.8 228 71.9
Lj5g0010413 Lotus japonicus HOM05D007539 ORTHO05D009315 3.7e-78 295.4 168 81.5
Sopen10g035220 Solanum pennellii HOM05D007539 ORTHO05D009315 3.7e-78 295.4 228 66.2
Actinidia39861 Actinidia chinensis HOM05D007539 ORTHO05D009315 4.8e-78 295.0 227 66.1
Cpa.g.sc5.125 Carica papaya HOM05D007539 ORTHO05D009315 4.8e-78 295.0 203 74.9
arahy.Tifrunner.gnm1.ann1.6XWD2H Arachis hypogaea HOM05D007539 ORTHO05D009315 6.3e-78 294.7 170 81.2
arahy.Tifrunner.gnm1.ann1.M3KAW1 Arachis hypogaea HOM05D007539 ORTHO05D009315 6.3e-78 294.7 170 81.2
Nitab4.5_0009839g0010 Nicotiana tabacum HOM05D007539 ORTHO05D009315 6.3e-78 294.7 168 82.1
Gohir.A04G068300 Gossypium hirsutum HOM05D007539 ORTHO05D009315 1.1e-77 293.9 168 83.9
Lj2A124T70 Lonicera japonica HOM05D007539 ORTHO05D009315 2.4e-77 292.7 236 63.6
Solyc10g085820.2 Solanum lycopersicum HOM05D007539 ORTHO05D009315 2.4e-77 292.7 228 65.8
Aqoxy4G02594 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 3.1e-77 292.4 167 81.4
EL10Ac7g16719 Beta vulgaris HOM05D007539 ORTHO05D009315 3.1e-77 292.4 166 81.9
Potri.016G096900 Populus trichocarpa HOM05D007539 ORTHO05D009315 4.1e-77 292.0 165 83.0
Aqoxy2G01556 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 7.0e-77 291.2 167 81.4
CAN.G729.5 Capsicum annuum HOM05D007539 ORTHO05D009315 7.0e-77 291.2 169 79.9
Gohir.D04G106800 Gossypium hirsutum HOM05D007539 ORTHO05D009315 7.0e-77 291.2 168 83.3
VMungo0720G2140 Vigna mungo HOM05D007539 ORTHO05D009315 7.0e-77 291.2 165 82.4
Glyma.10G063500 Glycine max HOM05D007539 ORTHO05D009315 9.1e-77 290.8 168 81.0
Ca_11568_v3 Cicer arietinum L. HOM05D007539 ORTHO05D009315 1.2e-76 290.4 167 80.8
Psat6g077160 Pisum sativum HOM05D007539 ORTHO05D009315 1.5e-76 290.0 192 72.9
SalBow5G4705 Salvia bowleyana HOM05D007539 ORTHO05D009315 4.5e-76 288.5 228 69.3
Ah.08g211220 Amaranthus hybridus HOM05D007539 ORTHO05D009315 7.7e-76 287.7 165 80.6
HanXRQChr08g0218701 Helianthus annuus HOM05D007539 ORTHO05D009315 2.2e-75 286.2 194 69.6
Phvul.007G226000 Phaseolus vulgaris HOM05D007539 ORTHO05D009315 2.2e-75 286.2 168 79.8
Peaxi162Scf00146g00014 Petunia axillaris HOM05D007539 ORTHO05D009315 2.9e-75 285.8 169 78.7
Sed0004549 Sechium edule HOM05D007539 ORTHO05D009315 1.1e-74 283.9 165 81.2
Prupe.7G122900 Prunus persica HOM05D007539 ORTHO05D009315 1.4e-74 283.5 170 77.6
TPR.G9909 Trifolium pratense HOM05D007539 ORTHO05D009315 3.2e-74 282.3 165 78.2
MBI11_g41953_MAGBIO Magnolia biondii HOM05D007539 ORTHO05D009315 4.2e-74 282.0 165 79.4
Oeu045245.1 Olea europaea HOM05D007539 ORTHO05D009315 5.5e-74 281.6 223 66.4
MSTRG.10338 Avicennia marina HOM05D007539 ORTHO05D009315 7.2e-74 281.2 228 64.5
AUR62042699 Chenopodium quinoa HOM05D007539 ORTHO05D009315 1.6e-73 280.0 166 78.3
Migut.L01732 Erythranthe guttata HOM05D007539 ORTHO05D009315 1.6e-73 280.0 231 61.5
RcHm_v2.0_Chr3g0471301 Rosa chinensis HOM05D007539 ORTHO05D009315 1.6e-73 280.0 229 64.6
GSVIVG01033714001 Vitis vinifera HOM05D007539 ORTHO05D009315 2.1e-73 279.6 164 80.5
MD12G1102800 Malus domestica HOM05D007539 ORTHO05D009315 4.7e-73 278.5 242 61.2
Zm00001eb175880 Zea mays HOM05D007539 ORTHO05D009315 6.1e-73 278.1 165 76.4
CsaV3_3G036460 Cucumis sativus L. HOM05D007539 ORTHO05D009315 8.0e-73 277.7 224 66.1
HPP92_014788 Vanilla planifolia HOM05D007539 ORTHO05D009315 1.0e-72 277.3 166 76.5
Thhalv10014552m.g Eutrema salsugineum HOM05D007539 ORTHO05D009315 3.9e-72 275.4 166 78.3
Medtr1g062250 Medicago truncatula HOM05D007539 ORTHO05D009315 3.9e-72 275.4 165 78.8
BcaB01g05802 Brassica carinata HOM05D007539 ORTHO05D009315 5.2e-72 275.0 166 78.3
Os08g0560600 Oryza sativa ssp. japonica HOM05D007539 ORTHO05D009315 8.8e-72 274.2 164 76.8
CANSAT80G1421 Cannabis sativa HOM05D007539 ORTHO05D009315 3.3e-71 272.3 178 75.8
CARHR209760 Cardamine hirsuta HOM05D007539 ORTHO05D009315 3.3e-71 272.3 166 76.5
FAN05G2086 Fragaria x ananassa HOM05D007539 ORTHO05D009315 3.3e-71 272.3 167 76.6
FvH4_6g17220 Fragaria vesca HOM05D007539 ORTHO05D009315 5.7e-71 271.6 167 76.0
SGA_v2.0_scaffold224G42914 Striga asiatica HOM05D007539 ORTHO05D009315 9.7e-71 270.8 229 60.3
FAN05G5748 Fragaria x ananassa HOM05D007539 ORTHO05D009315 1.7e-70 270.0 167 76.0
FAN14G0473 Fragaria x ananassa HOM05D007539 ORTHO05D009315 4.8e-70 268.5 167 75.4
Rhsim03G0085100 Rhododendron simsii HOM05D007539 ORTHO05D009315 4.8e-70 268.5 251 58.2
Sabra16G0100100 Salix brachista HOM05D007539 ORTHO05D009315 8.2e-70 267.7 204 67.2
ECA238G4618 Erigeron canadensis HOM05D007539 ORTHO05D009315 9.1e-69 264.2 166 75.3
FAN02G2576 Fragaria x ananassa HOM05D007539 ORTHO05D009315 2.0e-68 263.1 167 74.9
CDE02G3922 Ceratophyllum demersum HOM05D007539 ORTHO05D009315 3.5e-68 262.3 169 74.0
A03p01240 Brassica napus HOM05D007539 ORTHO05D009315 1.0e-67 260.8 180 70.6
PSO339G1895 Papaver somniferum HOM05D007539 ORTHO05D009315 1.3e-67 260.4 168 73.8
CiPaw.09G005200 Carya illinoinensis HOM05D007539 ORTHO05D009315 3.8e-67 258.8 200 73.5
unitig_8.g4721 Utricularia gibba HOM05D007539 ORTHO05D009315 1.9e-66 256.5 204 61.3
ATR0950G005 Amborella trichopoda HOM05D007539 ORTHO05D009315 3.2e-66 255.8 164 72.0
Nitab4.5_0000725g0080 Nicotiana tabacum HOM05D007539 ORTHO05D009315 1.8e-64 250.0 204 62.7
Lalb_Chr02g0155351 Lupinus albus HOM05D007539 ORTHO05D009315 5.2e-64 248.4 148 76.4
Glyma.13G148000 Glycine max HOM05D007539 ORTHO05D009315 8.8e-64 247.7 140 82.1
ClCG10G019640 Citrullus lanatus HOM05D007539 ORTHO05D009315 2.6e-63 246.1 143 81.1
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 2.6e-63 246.1 165 73.9
Ah.12g063350 Amaranthus hybridus HOM05D007539 ORTHO05D009315 3.7e-62 242.3 139 79.1
vmacro07349 Vaccinium macrocarpon HOM05D007539 ORTHO05D009315 3.1e-61 239.2 143 77.6
BolC3t12712H Brassica oleracea HOM05D007539 ORTHO05D009315 1.9e-58 229.9 239 52.3
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 2.7e-57 226.1 147 72.1
BcaB01g05814 Brassica carinata HOM05D007539 ORTHO05D009315 2.6e-55 219.5 199 58.8
C03p01600 Brassica napus HOM05D007539 ORTHO05D009315 2.2e-54 216.5 137 74.5
AUR62040192 Chenopodium quinoa HOM05D007539 ORTHO05D009315 1.9e-50 203.4 122 77.0
Lsat_1_v5_gn_2_18420 Lactuca sativa HOM05D007539 ORTHO05D009315 2.8e-49 199.5 122 73.8
Carub.0006s0239 Capsella rubella HOM05D007539 ORTHO05D009315 8.0e-49 198.0 122 75.4
AL6G13050 Arabidopsis lyrata HOM05D007539 ORTHO05D009315 1.4e-48 197.2 122 74.6
BraA03t09504Z Brassica rapa HOM05D007539 ORTHO05D009315 1.9e-42 176.8 215 46.0
Mapoly0014s0214 Marchantia polymorpha HOM05D007539 ORTHO05D009315 1.4e-40 170.6 180 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3355 Anthoceros agrestis HOM05D007539 ORTHO05D009315 8.9e-40 167.9 168 46.4
FAN09G1910 Fragaria x ananassa HOM05D007539 ORTHO05D009315 3.4e-31 139.4 78 83.3
QL07p041388 Quercus lobata HOM05D007539 ORTHO05D009315 4.9e-30 135.6 74 81.1
CBR_g37238 Chara braunii HOM05D007539 ORTHO05D009315 1.9e-21 107.1 221 30.3
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-11 74.3 119 45.4
THA.LOC104826924 Tarenaya hassleriana HOM05D002804 ORTHO05D003755 1.5e-07 60.8 97 45.4
CSS0027054 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 3.4e-07 59.7 68 51.5
CSS0032451 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 4.4e-07 59.3 72 48.6


User provided reference genes

Program Settings