Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1575 Punica granatum HOM05D004896 ORTHO05D006447 5.3e-179 630.9 330 100.0
Manes.15G155100 Manihot esculenta HOM05D004896 ORTHO05D006447 5.1e-137 491.5 337 75.4
Cpa.g.sc130.54 Carica papaya HOM05D004896 ORTHO05D006447 4.0e-134 481.9 328 75.6
RcHm_v2.0_Chr2g0173821 Rosa chinensis HOM05D004896 ORTHO05D006447 4.4e-133 478.4 334 74.0
Ciclev10015882m.g Citrus clementina HOM05D004896 ORTHO05D006447 9.9e-133 477.2 341 75.1
Gorai.012G091200 Gossypium raimondii HOM05D004896 ORTHO05D006447 1.1e-131 473.8 335 74.0
Gohir.A05G342400 Gossypium hirsutum HOM05D004896 ORTHO05D006447 1.4e-131 473.4 335 74.0
Eucgr.I01701 Eucalyptus grandis HOM05D004896 ORTHO05D006447 2.4e-131 472.6 277 84.8
QL02p073334 Quercus lobata HOM05D004896 ORTHO05D006447 3.5e-130 468.8 338 72.8
FAN05G4015 Fragaria x ananassa HOM05D004896 ORTHO05D006447 1.7e-129 466.5 344 71.2
FvH4_6g52290 Fragaria vesca HOM05D004896 ORTHO05D006447 2.3e-129 466.1 343 71.1
Thecc.04G026600 Theobroma cacao HOM05D004896 ORTHO05D006447 3.9e-129 465.3 340 72.6
Cfa007299 Carpinus fangiana HOM05D004896 ORTHO05D006447 6.6e-129 464.5 336 72.6
Duzib264G0232 Durio zibethinus HOM05D004896 ORTHO05D006447 6.6e-129 464.5 336 72.3
FAN09G1675 Fragaria x ananassa HOM05D004896 ORTHO05D006447 6.6e-129 464.5 341 71.0
FAN14G4168 Fragaria x ananassa HOM05D004896 ORTHO05D006447 2.5e-128 462.6 343 70.6
Actinidia18427 Actinidia chinensis HOM05D004896 ORTHO05D006447 4.3e-128 461.8 341 71.0
FAN02G3298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 4.3e-128 461.8 343 70.8
MD09G1019000 Malus domestica HOM05D004896 ORTHO05D006447 4.3e-128 461.8 344 70.6
GSVIVG01003974001 Vitis vinifera HOM05D004896 ORTHO05D006447 5.6e-128 461.5 331 71.9
ClCG05G013000 Citrullus lanatus HOM05D004896 ORTHO05D006447 9.5e-128 460.7 312 75.6
Nitab4.5_0001031g0180 Nicotiana tabacum HOM05D004896 ORTHO05D006447 2.8e-127 459.1 339 71.7
Prupe.3G298100 Prunus persica HOM05D004896 ORTHO05D006447 2.8e-127 459.1 343 70.0
TWI56G0223 Tripterygium wilfordii HOM05D004896 ORTHO05D006447 4.7e-127 458.4 352 68.5
Nn5g27187 Nelumbo nucifera HOM05D004896 ORTHO05D006447 1.4e-126 456.8 299 77.6
COL.COLO4_29242 Corchorus olitorius HOM05D004896 ORTHO05D006447 2.4e-126 456.1 334 72.2
Hma1.2p1_1484F.1_g286400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 2.4e-126 456.1 343 70.8
Ca_03861_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 3.1e-126 455.7 327 73.1
Lj1g0027814 Lotus japonicus HOM05D004896 ORTHO05D006447 3.1e-126 455.7 286 80.4
Psat3g168560 Pisum sativum HOM05D004896 ORTHO05D006447 3.1e-126 455.7 327 73.7
CsaV3_3G027540 Cucumis sativus L. HOM05D004896 ORTHO05D006447 4.0e-126 455.3 295 77.3
Ah.12g059440 Amaranthus hybridus HOM05D004896 ORTHO05D006447 8.9e-126 454.1 329 71.1
ECA246G3787 Erigeron canadensis HOM05D004896 ORTHO05D006447 2.0e-125 453.0 326 72.7
Hma1.2p1_1407F.1_g281400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 2.6e-125 452.6 342 70.8
Sed0025595 Sechium edule HOM05D004896 ORTHO05D006447 2.6e-125 452.6 311 74.0
Lj7A604T65 Lonicera japonica HOM05D004896 ORTHO05D006447 3.4e-125 452.2 319 74.3
arahy.Tifrunner.gnm1.ann1.10VWGS Arachis hypogaea HOM05D004896 ORTHO05D006447 4.4e-125 451.8 257 86.4
arahy.Tifrunner.gnm1.ann1.5ILH08 Arachis hypogaea HOM05D004896 ORTHO05D006447 4.4e-125 451.8 257 86.4
Nitab4.5_0002158g0160 Nicotiana tabacum HOM05D004896 ORTHO05D006447 4.4e-125 451.8 337 70.3
MBI19_g04325_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 9.9e-125 450.7 331 73.1
Medtr0018s0290 Medicago truncatula HOM05D004896 ORTHO05D006447 9.9e-125 450.7 327 72.8
CSS0017957 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 1.7e-124 449.9 337 70.6
CANSAT64G0177 Cannabis sativa HOM05D004896 ORTHO05D006447 1.7e-124 449.9 339 69.3
Hma1.2p1_0383F.1_g140290 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 2.9e-124 449.1 300 76.3
Potri.001G338200 Populus trichocarpa HOM05D004896 ORTHO05D006447 3.8e-124 448.7 337 71.2
Gohir.D04G080440 Gossypium hirsutum HOM05D004896 ORTHO05D006447 6.4e-124 448.0 320 73.1
SGA_v2.0_scaffold135G34930 Striga asiatica HOM05D004896 ORTHO05D006447 1.4e-123 446.8 338 69.5
Glyma.16G066000 Glycine max HOM05D004896 ORTHO05D006447 2.4e-123 446.0 318 73.0
Phvul.008G145713 Phaseolus vulgaris HOM05D004896 ORTHO05D006447 2.4e-123 446.0 326 71.8
VMungo1080G0372 Vigna mungo HOM05D004896 ORTHO05D006447 3.2e-123 445.7 309 73.8
Ca_01399_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 1.2e-122 443.7 335 70.7
TAR629G1306 Trochodendron aralioides HOM05D004896 ORTHO05D006447 1.2e-122 443.7 294 77.2
Sopen02g038330 Solanum pennellii HOM05D004896 ORTHO05D006447 2.1e-122 443.0 344 68.0
HanXRQChr17g0549471 Helianthus annuus HOM05D004896 ORTHO05D006447 4.6e-122 441.8 273 80.2
PGSC0003DMG400012644 Solanum tuberosum HOM05D004896 ORTHO05D006447 6.0e-122 441.4 344 68.0
Aqoxy1G02023 Aquilegia oxysepala HOM05D004896 ORTHO05D006447 7.8e-122 441.0 295 74.9
Rhsim08G0046600 Rhododendron simsii HOM05D004896 ORTHO05D006447 7.8e-122 441.0 256 84.4
Solyc02g093690.3 Solanum lycopersicum HOM05D004896 ORTHO05D006447 1.7e-121 439.9 341 68.0
MSTRG.3120 Avicennia marina HOM05D004896 ORTHO05D006447 3.0e-121 439.1 327 71.3
Haze_14796 Corylus avellana HOM05D004896 ORTHO05D006447 5.1e-121 438.3 323 71.5
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 1.5e-120 436.8 339 67.8
TPR.G1112 Trifolium pratense HOM05D004896 ORTHO05D006447 1.5e-120 436.8 327 70.6
A04p13700 Brassica napus HOM05D004896 ORTHO05D006447 1.9e-120 436.4 330 69.7
BraA04t17030Z Brassica rapa HOM05D004896 ORTHO05D006447 1.9e-120 436.4 330 69.7
Migut.H00045 Erythranthe guttata HOM05D004896 ORTHO05D006447 1.9e-120 436.4 342 67.8
BcaB06g27542 Brassica carinata HOM05D004896 ORTHO05D006447 2.5e-120 436.0 330 69.4
THA.LOC104825307 Tarenaya hassleriana HOM05D004896 ORTHO05D006447 3.3e-120 435.6 330 70.9
BolC4t26350H Brassica oleracea HOM05D004896 ORTHO05D006447 4.3e-120 435.3 330 69.4
EL10Ac9g21007 Beta vulgaris HOM05D004896 ORTHO05D006447 5.6e-120 434.9 331 68.3
C04p47490 Brassica napus HOM05D004896 ORTHO05D006447 5.6e-120 434.9 330 69.1
vmacro18309 Vaccinium macrocarpon HOM05D004896 ORTHO05D006447 7.3e-120 434.5 250 84.0
AUR62030697 Chenopodium quinoa HOM05D004896 ORTHO05D006447 9.6e-120 434.1 252 82.9
AUR62036338 Chenopodium quinoa HOM05D004896 ORTHO05D006447 1.3e-119 433.7 252 82.9
Cc07_g00300 Coffea canephora HOM05D004896 ORTHO05D006447 2.8e-119 432.6 252 83.3
CiPaw.03G049000 Carya illinoinensis HOM05D004896 ORTHO05D006447 3.6e-119 432.2 342 68.1
CAN.G473.48 Capsicum annuum HOM05D004896 ORTHO05D006447 6.2e-119 431.4 338 68.3
Hund14985 Selenicereus undatus HOM05D004896 ORTHO05D006447 8.1e-119 431.0 324 68.8
EL10Ac5g10496 Beta vulgaris HOM05D004896 ORTHO05D006447 1.1e-118 430.6 331 68.3
FvH4_6g52310 Fragaria vesca HOM05D004896 ORTHO05D006447 2.4e-118 429.5 252 82.9
AL7G49080 Arabidopsis lyrata HOM05D004896 ORTHO05D006447 4.0e-118 428.7 332 68.4
Carub.0007s3482 Capsella rubella HOM05D004896 ORTHO05D006447 4.0e-118 428.7 332 68.4
Lalb_Chr14g0362991 Lupinus albus HOM05D004896 ORTHO05D006447 5.3e-118 428.3 252 82.9
Lsat_1_v5_gn_0_30781 Lactuca sativa HOM05D004896 ORTHO05D006447 6.9e-118 427.9 342 65.5
CSS0036459 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 3.4e-117 425.6 389 61.2
AT5G40660 Arabidopsis thaliana HOM05D004896 ORTHO05D006447 7.6e-117 424.5 332 68.7
CARHR261290 Cardamine hirsuta HOM05D004896 ORTHO05D006447 9.9e-117 424.1 332 67.8
PSO675G8471 Papaver somniferum HOM05D004896 ORTHO05D006447 4.9e-116 421.8 301 73.8
ATR0099G063 Amborella trichopoda HOM05D004896 ORTHO05D006447 6.4e-116 421.4 253 80.2
PSO541G0959 Papaver somniferum HOM05D004896 ORTHO05D006447 1.1e-115 420.6 295 73.2
Dinv33394 Davidia involucrata HOM05D004896 ORTHO05D006447 1.4e-115 420.2 329 67.5
CiPaw.04G032200 Carya illinoinensis HOM05D004896 ORTHO05D006447 3.2e-115 419.1 333 67.6
unitig_0.g536 Utricularia gibba HOM05D004896 ORTHO05D006447 7.8e-114 414.5 285 71.2
Sabra16G0218900 Salix brachista HOM05D004896 ORTHO05D006447 8.7e-113 411.0 415 57.3
Sp7g01200 Schrenkiella parvula HOM05D004896 ORTHO05D006447 4.3e-112 408.7 331 65.9
Zm00001eb329190 Zea mays HOM05D004896 ORTHO05D006447 9.6e-112 407.5 270 73.7
Thhalv10027828m.g Eutrema salsugineum HOM05D004896 ORTHO05D006447 4.8e-111 405.2 339 66.1
Os07g0644000 Oryza sativa ssp. japonica HOM05D004896 ORTHO05D006447 3.1e-110 402.5 252 77.4
MELO3C014823.2 Cucumis melo HOM05D004896 ORTHO05D006447 2.6e-109 399.4 262 77.5
Atru.chr6.2473 Acer truncatum HOM05D004896 ORTHO05D006447 7.6e-109 397.9 307 69.1
Aa31LG9G960 Aethionema arabicum HOM05D004896 ORTHO05D006447 1.3e-108 397.1 329 62.9
CDE07G0249 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 1.7e-108 396.7 304 66.1
HPP92_020467 Vanilla planifolia HOM05D004896 ORTHO05D006447 1.1e-107 394.0 316 64.9
RcHm_v2.0_Chr2g0174241 Rosa chinensis HOM05D004896 ORTHO05D006447 4.2e-107 392.1 348 63.8
Sc03g0007130 Simmondsia chinensis HOM05D004896 ORTHO05D006447 9.3e-107 391.0 299 70.2
HPP92_026167 Vanilla planifolia HOM05D004896 ORTHO05D006447 1.0e-105 387.5 250 74.8
Peaxi162Scf00420g00251 Petunia axillaris HOM05D004896 ORTHO05D006447 1.9e-99 366.7 338 60.7
SHI03827 Sapria himalayana HOM05D004896 ORTHO05D006447 2.1e-98 363.2 241 71.4
FAN14G0298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 6.7e-97 358.2 350 58.3
SEGI_10618 Sequoiadendron giganteum HOM05D004896 ORTHO05D006447 5.5e-91 338.6 274 62.8
Atru.chr3.2666 Acer truncatum HOM05D004896 ORTHO05D006447 3.7e-87 325.9 235 72.8
Oeu064389.1 Olea europaea HOM05D004896 ORTHO05D006447 1.5e-85 320.5 318 55.7
Sed0012039 Sechium edule HOM05D004896 ORTHO05D006447 1.0e-81 307.8 279 60.9
SGA_v2.0_scaffold18G08247 Striga asiatica HOM05D004896 ORTHO05D006447 1.4e-75 287.3 337 51.3
MD17G1019600 Malus domestica HOM05D004896 ORTHO05D006447 3.3e-64 249.6 217 61.8
Nitab4.5_0002158g0260 Nicotiana tabacum HOM05D002474 ORTHO05D007142 8.2e-63 245.0 209 63.6
Hma1.2p1_1484F.1_g286430 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 3.5e-61 239.6 212 61.8
SMO200G0187 Selaginella moellendorffii HOM05D004896 ORTHO05D006447 3.5e-61 239.6 238 51.7
Pp3c2_19250 Physcomitrium patens HOM05D004896 ORTHO05D006447 4.5e-61 239.2 247 50.2
EL10Ac5g11826 Beta vulgaris HOM05D004896 ORTHO05D006447 2.2e-60 236.9 150 75.3
Actinidia16947 Actinidia chinensis HOM05D004896 ORTHO05D006447 3.2e-59 233.0 215 62.8
Mapoly0004s0068 Marchantia polymorpha HOM05D004896 ORTHO05D006447 4.7e-58 229.2 236 50.0
Atru.chr4.450 Acer truncatum HOM05D004896 ORTHO05D006447 1.8e-57 227.3 209 58.9
Hma1.2p1_1484F.1_g286403 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 5.7e-56 222.2 127 87.4
Hma1.2p1_1484F.1_g286440 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 5.7e-56 222.2 127 87.4
AagrBONN_evm.TU.Sc2ySwM_362.2811 Anthoceros agrestis HOM05D004896 ORTHO05D006447 6.3e-55 218.8 269 43.9
Duzib147G0160 Durio zibethinus HOM05D004896 ORTHO05D006447 5.9e-53 212.2 125 82.4
Cc06_g20980 Coffea canephora HOM05D004896 ORTHO05D006447 5.0e-52 209.1 170 65.9
CBR_g4059 Chara braunii HOM05D004896 ORTHO05D006447 1.6e-50 204.1 220 47.3
AUR62030692 Chenopodium quinoa HOM05D004896 ORTHO05D006447 1.6e-50 204.1 109 88.1
PRCOL_00001693 Prasinoderma coloniale HOM05D004896 ORTHO05D006447 7.0e-46 188.7 236 42.4
MCO13G572 Micromonas commoda HOM05D004896 ORTHO05D006447 1.3e-39 167.9 250 39.2
MBI19_g02443_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 1.3e-36 157.9 91 85.7
Glyma.19G080702 Glycine max HOM05D004896 ORTHO05D006447 5.6e-35 152.5 100 75.0
Atru.chr11.190 Acer truncatum HOM05D004896 ORTHO05D006447 3.5e-29 133.3 138 55.8
Cre17.g726250 Chlamydomonas reinhardtii HOM05D004896 ORTHO05D006447 3.5e-29 133.3 215 36.3
Atru.chr7.121 Acer truncatum HOM05D005216 ORTHO05D006453 5.0e-28 129.4 104 66.3
Atru.chr2.3725 Acer truncatum HOM05D004896 ORTHO05D006447 1.8e-25 120.9 65 87.7
Atru.chr1.36 Acer truncatum HOM05D004896 ORTHO05D006447 6.8e-25 119.0 65 86.2
CDE12G0511 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 8.9e-25 118.6 92 67.4
Atru.chr2.563 Acer truncatum HOM05D004866 ORTHO05D005716 1.5e-24 117.9 65 86.2
BcaC04g20647 Brassica carinata HOM05D004896 ORTHO05D006447 1.7e-23 114.4 102 59.8
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 1.7e-23 114.4 102 59.8
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 1.7e-23 114.4 102 59.8
BraA05t20477Z Brassica rapa HOM05D004896 ORTHO05D024046 7.8e-21 105.5 81 64.2
Ah.07g205180 Amaranthus hybridus HOM05D004896 ORTHO05D060504 5.6e-19 99.4 176 38.1
Atru.chr1.2050 Acer truncatum HOM05D004896 ORTHO05D006447 1.2e-16 91.7 80 62.5
BcaB01g05885 Brassica carinata HOM05D004896 ORTHO05D024046 2.0e-16 90.9 50 84.0
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 9.9e-16 88.6 52 80.8
A05p15620 Brassica napus HOM05D004896 ORTHO05D024046 1.3e-15 88.2 47 85.1
BcaC01g04583 Brassica carinata HOM05D004896 ORTHO05D006447 2.1e-13 80.9 47 80.9
Actinidia35788 Actinidia chinensis HOM05D004896 ORTHO05D006447 7.8e-13 79.0 160 36.9
TAR628G1566 Trochodendron aralioides HOM05D004896 ORTHO05D006447 4.0e-09 66.6 46 67.4


User provided reference genes

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