Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1511 Punica granatum HOM05D005047 ORTHO05D006540 9.8e-115 416.8 205 100.0
GSVIVG01029046001 Vitis vinifera HOM05D005047 ORTHO05D006540 1.7e-103 379.4 204 90.7
Gorai.006G219600 Gossypium raimondii HOM05D005047 ORTHO05D006540 1.5e-102 376.3 203 88.7
Gohir.D09G196200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 4.3e-102 374.8 203 88.7
Thecc.04G211900 Theobroma cacao HOM05D005047 ORTHO05D006540 5.6e-102 374.4 197 90.9
Gohir.A09G202200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 1.2e-101 373.2 205 88.3
Haze_11554 Corylus avellana HOM05D005047 ORTHO05D006540 2.8e-101 372.1 198 90.4
CiPaw.01G126600 Carya illinoinensis HOM05D005047 ORTHO05D006540 4.7e-101 371.3 198 88.4
Ca_11862_v3 Cicer arietinum L. HOM05D005047 ORTHO05D006540 6.2e-101 370.9 201 88.1
TWI73G0442 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 8.1e-101 370.5 199 88.9
COL.COLO4_34082 Corchorus olitorius HOM05D005047 ORTHO05D006540 1.1e-100 370.2 203 89.2
Psat6g048720 Pisum sativum HOM05D005047 ORTHO05D006540 1.4e-100 369.8 202 87.1
Duzib212G0386 Durio zibethinus HOM05D005047 ORTHO05D006540 1.8e-100 369.4 203 88.2
Potri.003G175800 Populus trichocarpa HOM05D005047 ORTHO05D006540 2.3e-100 369.0 201 87.6
Lalb_Chr01g0010841 Lupinus albus HOM05D005047 ORTHO05D006540 4.0e-100 368.2 200 88.0
Medtr1g047390 Medicago truncatula HOM05D005047 ORTHO05D006540 4.0e-100 368.2 201 87.6
Potri.001G052400 Populus trichocarpa HOM05D005047 ORTHO05D006540 6.8e-100 367.5 199 89.4
Ciclev10005905m.g Citrus clementina HOM05D005047 ORTHO05D006540 2.0e-99 365.9 199 88.4
CANSAT78G0753 Cannabis sativa HOM05D005047 ORTHO05D006540 2.6e-99 365.5 201 86.6
CANSAT78G2209 Cannabis sativa HOM05D005047 ORTHO05D006540 2.6e-99 365.5 201 86.6
Lj6g0004838 Lotus japonicus HOM05D005047 ORTHO05D006540 3.4e-99 365.2 201 86.6
Eucgr.H00094 Eucalyptus grandis HOM05D005047 ORTHO05D006540 5.8e-99 364.4 200 87.5
PSO782G5131 Papaver somniferum HOM05D005047 ORTHO05D006540 1.7e-98 362.8 198 86.9
Aa31LG9G3930 Aethionema arabicum HOM05D005047 ORTHO05D006540 2.9e-98 362.1 202 84.7
Cpa.g.sc59.91 Carica papaya HOM05D005047 ORTHO05D006540 3.8e-98 361.7 201 85.6
Phvul.007G236950 Phaseolus vulgaris HOM05D005047 ORTHO05D006540 4.9e-98 361.3 198 85.9
Prupe.1G060800 Prunus persica HOM05D005047 ORTHO05D006540 4.9e-98 361.3 203 84.7
RcHm_v2.0_Chr4g0396911 Rosa chinensis HOM05D005047 ORTHO05D006540 4.9e-98 361.3 203 84.2
PSO478G4795 Papaver somniferum HOM05D005047 ORTHO05D006540 6.4e-98 360.9 198 86.9
BcaB02g08656 Brassica carinata HOM05D005047 ORTHO05D006540 1.1e-97 360.1 202 85.6
Thhalv10026260m.g Eutrema salsugineum HOM05D005047 ORTHO05D006540 1.9e-97 359.4 199 84.9
AL7G42780 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 2.4e-97 359.0 201 85.1
Cc03_g07220 Coffea canephora HOM05D005047 ORTHO05D006540 5.4e-97 357.8 203 83.7
Sabra03G0128700 Salix brachista HOM05D005047 ORTHO05D006540 1.2e-96 356.7 217 82.0
CSS0002501 Camellia sinensis var. sinensis HOM05D005047 ORTHO05D006540 2.1e-96 355.9 201 84.1
Glyma.10G125100 Glycine max HOM05D005047 ORTHO05D006540 2.7e-96 355.5 195 85.6
Dinv38281 Davidia involucrata HOM05D005047 ORTHO05D006540 4.6e-96 354.8 201 85.1
Sp7g11500 Schrenkiella parvula HOM05D005047 ORTHO05D006540 4.6e-96 354.8 199 84.9
THA.LOC104808728 Tarenaya hassleriana HOM05D005047 ORTHO05D006540 4.6e-96 354.8 198 85.4
C04p42210 Brassica napus HOM05D005047 ORTHO05D006540 7.8e-96 354.0 202 84.2
EL10Ac3g06787 Beta vulgaris HOM05D005047 ORTHO05D006540 1.3e-95 353.2 197 84.3
Glyma.20G077400 Glycine max HOM05D005047 ORTHO05D006540 1.3e-95 353.2 195 85.1
PGSC0003DMG400029615 Solanum tuberosum HOM05D005047 ORTHO05D006540 2.3e-95 352.4 202 83.7
AT4G13720 Arabidopsis thaliana HOM05D005047 ORTHO05D006540 3.9e-95 351.7 195 83.6
CDE04G3429 Ceratophyllum demersum HOM05D005047 ORTHO05D006540 5.1e-95 351.3 190 86.8
Nitab4.5_0010267g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 6.6e-95 350.9 205 82.9
Sc13g0002770 Simmondsia chinensis HOM05D005047 ORTHO05D006540 6.6e-95 350.9 200 81.0
Sopen09g034350 Solanum pennellii HOM05D005047 ORTHO05D006540 6.6e-95 350.9 205 82.9
Sed0007809 Sechium edule HOM05D005047 ORTHO05D006540 8.6e-95 350.5 201 83.1
AL5G12130 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 1.5e-94 349.7 200 83.5
HanXRQChr01g0022691 Helianthus annuus HOM05D005047 ORTHO05D006540 7.3e-94 347.4 199 82.9
Solyc09g091420.4 Solanum lycopersicum HOM05D005047 ORTHO05D006540 9.6e-94 347.1 205 82.0
BraA04t16537Z Brassica rapa HOM05D005047 ORTHO05D006540 2.8e-93 345.5 203 83.3
TAR633G1642 Trochodendron aralioides HOM05D005047 ORTHO05D006540 2.8e-93 345.5 205 84.4
A04p08470 Brassica napus HOM05D005047 ORTHO05D006540 3.6e-93 345.1 203 84.2
BolC4t25799H Brassica oleracea HOM05D005047 ORTHO05D006540 3.6e-93 345.1 203 84.2
CsaV3_3G011290 Cucumis sativus L. HOM05D005047 ORTHO05D006540 8.1e-93 344.0 189 85.7
ECA248G2813 Erigeron canadensis HOM05D005047 ORTHO05D006540 1.1e-92 343.6 200 81.5
Migut.N00337 Erythranthe guttata HOM05D005047 ORTHO05D006540 2.4e-92 342.4 200 82.0
BcaC02g09395 Brassica carinata HOM05D005047 ORTHO05D006540 3.1e-92 342.0 198 83.8
Lj6A611T47 Lonicera japonica HOM05D005047 ORTHO05D006540 7.6e-91 337.4 203 81.3
Hma1.2p1_0903F.1_g235140 Hydrangea macrophylla HOM05D005047 ORTHO05D006540 2.9e-90 335.5 201 80.6
HPP92_015205 Vanilla planifolia HOM05D005047 ORTHO05D006540 3.8e-90 335.1 192 81.2
SGA_v2.0_scaffold2G00831 Striga asiatica HOM05D005047 ORTHO05D006540 6.4e-90 334.3 231 73.2
TPR.G10100 Trifolium pratense HOM05D005047 ORTHO05D006540 6.4e-90 334.3 172 90.1
Manes.03G152700 Manihot esculenta HOM05D005047 ORTHO05D006540 2.4e-89 332.4 201 78.1
Manes.15G048800 Manihot esculenta HOM05D005047 ORTHO05D006540 4.2e-89 331.6 201 78.6
Hund19253 Selenicereus undatus HOM05D005047 ORTHO05D006540 2.1e-88 329.3 202 80.2
SalBow3G2150 Salvia bowleyana HOM05D005047 ORTHO05D006540 2.7e-88 328.9 223 73.5
Os10g0457500 Oryza sativa ssp. japonica HOM05D005047 ORTHO05D006540 6.0e-88 327.8 202 78.2
Zm00001eb046670 Zea mays HOM05D005047 ORTHO05D006540 1.0e-87 327.0 196 79.1
FAN12G1457 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.7e-87 326.2 203 79.3
unitig_749.g13975 Utricularia gibba HOM05D005047 ORTHO05D006540 6.6e-87 324.3 212 74.5
FAN07G0410 Fragaria x ananassa HOM05D005047 ORTHO05D006540 9.6e-86 320.5 203 77.8
VMungo0720G0344 Vigna mungo HOM05D005047 ORTHO05D006540 1.1e-84 317.0 250 64.8
Mapoly0026s0018 Marchantia polymorpha HOM05D005047 ORTHO05D006540 1.2e-83 313.5 183 79.2
vmacro00514 Vaccinium macrocarpon HOM05D005047 ORTHO05D006540 1.2e-83 313.5 199 78.9
AUR62032663 Chenopodium quinoa HOM05D005047 ORTHO05D006540 1.3e-82 310.1 191 79.1
Lsat_1_v5_gn_0_4860 Lactuca sativa HOM05D005047 ORTHO05D006540 2.9e-82 308.9 241 65.6
Ah.13g075240 Amaranthus hybridus HOM05D005047 ORTHO05D006540 1.4e-81 306.6 200 74.5
Nitab4.5_0010728g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 4.6e-80 301.6 205 74.1
Aa31LG9G3940 Aethionema arabicum HOM05D005047 ORTHO05D006540 6.0e-80 301.2 221 67.9
ClCG05G003600 Citrullus lanatus HOM05D005047 ORTHO05D006540 6.0e-80 301.2 192 77.1
Pp3c16_19640 Physcomitrium patens HOM05D005047 ORTHO05D006540 2.3e-79 299.3 194 74.2
SMO367G0232 Selaginella moellendorffii HOM05D005047 ORTHO05D006540 4.3e-78 295.0 198 71.7
AagrBONN_evm.TU.Sc2ySwM_344.3277 Anthoceros agrestis HOM05D005047 ORTHO05D006540 5.6e-78 294.7 188 73.4
Carub.0007s2874 Capsella rubella HOM05D005047 ORTHO05D006540 4.8e-77 291.6 155 86.5
Dinv29555 Davidia involucrata HOM05D005047 ORTHO05D006540 3.4e-75 285.4 200 75.0
AUR62035305 Chenopodium quinoa HOM05D005047 ORTHO05D006540 4.5e-75 285.0 260 58.8
Oeu006715.2 Olea europaea HOM05D005047 ORTHO05D006540 2.9e-74 282.3 209 69.9
CAN.G500.97 Capsicum annuum HOM05D005047 ORTHO05D006540 8.4e-74 280.8 156 84.0
Nn3g19880 Nelumbo nucifera HOM05D005047 ORTHO05D006540 6.0e-72 274.6 201 70.1
ATR0088G035 Amborella trichopoda HOM05D005047 ORTHO05D006540 2.0e-67 259.6 142 84.5
Atru.chr4.1794 Acer truncatum HOM05D005047 ORTHO05D006540 7.6e-67 257.7 133 88.7
Actinidia37393 Actinidia chinensis HOM05D005047 ORTHO05D006540 2.5e-65 252.7 207 65.7
Peaxi162Scf00047g01312 Petunia axillaris HOM05D005047 ORTHO05D006540 2.5e-65 252.7 203 63.5
MCO04G006 Micromonas commoda HOM05D005047 ORTHO05D006540 4.2e-65 251.9 175 66.3
Cre02.g095089 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 2.1e-64 249.6 180 64.4
SHI24117 Sapria himalayana HOM05D005047 ORTHO05D006540 3.0e-63 245.7 195 62.6
MBI07_g19553_MAGBIO Magnolia biondii HOM05D005047 ORTHO05D006540 2.1e-61 239.6 222 60.8
Zm00001eb377030 Zea mays HOM05D005047 ORTHO05D006540 6.3e-61 238.0 137 77.4
Aqoxy2G03810 Aquilegia oxysepala HOM05D005047 ORTHO05D006540 9.0e-60 234.2 199 60.3
arahy.Tifrunner.gnm1.ann1.BK86JE Arachis hypogaea HOM05D005047 ORTHO05D006540 3.4e-59 232.3 196 63.3
PRCOL_00006994 Prasinoderma coloniale HOM05D005047 ORTHO05D006540 1.1e-57 227.3 180 60.0
Rhsim09G0049500 Rhododendron simsii HOM05D005047 ORTHO05D006540 4.6e-56 221.9 137 75.9
Zm00001eb086240 Zea mays HOM05D005047 ORTHO05D006540 9.7e-54 214.2 116 81.9
MD13G1230900 Malus domestica HOM05D005047 ORTHO05D006540 1.1e-52 210.7 110 84.5
arahy.Tifrunner.gnm1.ann1.0X932T Arachis hypogaea HOM05D005047 ORTHO05D006540 6.9e-52 208.0 129 73.6
QL06p023224 Quercus lobata HOM05D005047 ORTHO05D006540 6.9e-52 208.0 110 85.5
CARHR219510 Cardamine hirsuta HOM05D005047 ORTHO05D006540 1.2e-51 207.2 109 85.3
Cfa024488 Carpinus fangiana HOM05D005047 ORTHO05D006540 3.4e-51 205.7 178 56.7
Zm00001eb102100 Zea mays HOM05D005047 ORTHO05D006540 8.5e-50 201.1 137 69.3
Sed0007961 Sechium edule HOM05D005047 ORTHO05D006540 1.0e-47 194.1 184 59.2
Cre13.g568950 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 3.8e-42 175.6 171 50.3
Carub.0007s2873 Capsella rubella HOM05D005047 ORTHO05D006540 5.2e-39 165.2 92 81.5
QL06p023220 Quercus lobata HOM05D005047 ORTHO05D006540 3.3e-38 162.5 86 93.0
DCAR_002273 Daucus carota HOM05D005047 ORTHO05D006540 8.2e-37 157.9 93 84.9
TWI09G0343 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 1.8e-36 156.8 97 76.3
TAR636G1612 Trochodendron aralioides HOM05D005047 ORTHO05D006540 2.0e-35 153.3 93 83.9
Zm00001eb177140 Zea mays HOM05D005047 ORTHO05D006540 2.0e-35 153.3 99 69.7
MELO3C031602.2 Cucumis melo HOM05D005047 ORTHO05D006540 2.6e-35 152.9 81 92.6
FvH4_4g05750 Fragaria vesca HOM05D005047 ORTHO05D006540 2.6e-35 152.9 89 85.4
MSTRG.21943 Avicennia marina HOM05D005047 ORTHO05D006540 2.2e-34 149.8 92 80.4
Zm00001eb425490 Zea mays HOM05D005047 ORTHO05D006540 2.2e-29 133.3 74 77.0
Zm00001eb180620 Zea mays HOM05D005047 ORTHO05D006540 2.8e-29 132.9 84 70.2
FAN17G1156 Fragaria x ananassa HOM05D005047 ORTHO05D006540 3.2e-25 119.4 68 77.9
SEGI_09208 Sequoiadendron giganteum HOM05D005047 ORTHO05D006540 6.3e-21 105.1 64 73.4
Sabra01G0036900 Salix brachista HOM05D005047 ORTHO05D006540 3.8e-18 95.9 48 87.5
Medtr1g047400 Medicago truncatula HOM05D005047 ORTHO05D006540 2.6e-14 83.2 60 68.3
CBR_g49288 Chara braunii HOM05D005047 ORTHO05D006540 3.4e-14 82.8 54 66.7
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 1.4e-12 77.4 43 88.4
arahy.Tifrunner.gnm1.ann1.FRRS2Q Arachis hypogaea HOM05D005047 ORTHO05D084578 4.1e-12 75.9 68 55.9
PRCOL_00003939 Prasinoderma coloniale HOM05D005047 ORTHO05D049269 5.4e-12 75.5 228 28.9
FvH4_6g44040 Fragaria vesca HOM05D005047 ORTHO05D006540 2.0e-11 73.6 39 87.2
TPR.G40557 Trifolium pratense HOM05D005047 ORTHO05D006540 2.7e-11 73.2 46 82.6
Duzib268G0889 Durio zibethinus HOM05D005047 ORTHO05D006540 3.5e-11 72.8 91 46.2
EL10Ac7g17560 Beta vulgaris HOM05D005047 ORTHO05D006373 1.3e-10 70.9 38 81.6
Glyma.12G173400 Glycine max HOM05D005047 ORTHO05D006540 3.8e-10 69.3 61 63.9
FvH4_5g32911 Fragaria vesca HOM05D005047 ORTHO05D006540 5.0e-10 68.9 33 97.0
EL10Ac6g14438 Beta vulgaris HOM05D005047 ORTHO05D006540 6.6e-10 68.6 38 78.9
FAN01G1709 Fragaria x ananassa HOM05D005047 ORTHO05D006540 6.6e-10 68.6 39 82.1
FAN26G2286 Fragaria x ananassa HOM05D005047 ORTHO05D006540 4.7e-08 62.4 34 88.2
Ca_28777_v3 Cicer arietinum L. HOM05D005047 ORTHO05D147776 8.0e-08 61.6 138 33.3
FAN27G1012 Fragaria x ananassa HOM05D029863 ORTHO05D006540 1.8e-07 60.5 30 93.3
CsaV3_6G019130 Cucumis sativus L. HOM05D005047 ORTHO05D006540 5.2e-07 58.9 45 71.1


User provided reference genes

Program Settings