Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 6.3e-18 93.6 68 100.0
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 3.6e-13 77.8 47 91.5
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 6.1e-13 77.0 47 91.5
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 6.1e-13 77.0 47 91.5
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 8.0e-13 76.6 68 69.1
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 8.0e-13 76.6 48 89.6
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 8.0e-13 76.6 68 67.6
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 8.0e-13 76.6 47 89.4
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 1.8e-12 75.5 47 85.1
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 1.8e-12 75.5 48 89.6
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 3.0e-12 74.7 47 85.1
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 4.0e-12 74.3 47 85.1
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 5.2e-12 73.9 45 88.9
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 5.2e-12 73.9 44 93.2
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 5.2e-12 73.9 47 87.2
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 5.2e-12 73.9 47 85.1
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 6.8e-12 73.6 47 87.2
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 6.8e-12 73.6 45 88.9
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 8.8e-12 73.2 47 87.2
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 8.8e-12 73.2 48 87.5
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.2e-11 72.8 48 85.4
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.2e-11 72.8 48 85.4
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 1.2e-11 72.8 69 66.7
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 1.2e-11 72.8 47 83.0
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.5e-11 72.4 47 85.1
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 2.0e-11 72.0 47 85.1
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 2.0e-11 72.0 47 85.1
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 2.0e-11 72.0 48 85.4
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 2.0e-11 72.0 48 87.5
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.0e-11 72.0 48 87.5
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 2.6e-11 71.6 47 80.9
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 2.6e-11 71.6 45 86.7
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 2.6e-11 71.6 47 83.0
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 3.4e-11 71.2 48 85.4
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 3.4e-11 71.2 49 81.6
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 3.4e-11 71.2 49 81.6
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 3.4e-11 71.2 49 81.6
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 3.4e-11 71.2 48 85.4
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 4.4e-11 70.9 47 83.0
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 5.7e-11 70.5 47 83.0
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 9.8e-11 69.7 48 85.4
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 9.8e-11 69.7 42 90.5
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 1.3e-10 69.3 47 85.1
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 1.7e-10 68.9 48 83.3
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 2.2e-10 68.6 48 81.2
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 3.7e-10 67.8 45 84.4
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 3.7e-10 67.8 45 84.4
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 3.7e-10 67.8 45 84.4
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 3.7e-10 67.8 47 85.1
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 4.8e-10 67.4 69 82.6
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 4.8e-10 67.4 66 62.1
COL.COLO4_12105 Corchorus olitorius HOM05D001094 ORTHO05D001050 6.3e-10 67.0 42 90.5
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 6.3e-10 67.0 48 81.2
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 8.3e-10 66.6 48 79.2
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 8.3e-10 66.6 47 78.7
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 8.3e-10 66.6 47 78.7
Dinv27235 Davidia involucrata HOM05D005458 ORTHO05D005672 1.1e-09 66.2 41 87.8
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 1.4e-09 65.9 47 78.7
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.8e-09 65.5 48 79.2
BcaB04g17662 Brassica carinata HOM05D005458 ORTHO05D005672 2.4e-09 65.1 43 83.7
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 2.4e-09 65.1 48 79.2
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 3.1e-09 64.7 48 79.2
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 3.1e-09 64.7 49 79.6
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 3.1e-09 64.7 48 79.2
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 4.1e-09 64.3 46 80.4
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 4.1e-09 64.3 48 77.1
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 4.1e-09 64.3 49 79.6
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 5.4e-09 63.9 47 78.7
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 5.4e-09 63.9 45 82.2
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 5.4e-09 63.9 45 82.2
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 5.4e-09 63.9 46 82.6
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 7.0e-09 63.5 67 73.1
Aa31LG9G4030 Aethionema arabicum HOM05D005458 ORTHO05D005672 9.1e-09 63.2 42 83.3
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 9.1e-09 63.2 42 83.3
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 9.1e-09 63.2 46 82.6
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 9.1e-09 63.2 47 78.7
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 9.1e-09 63.2 48 81.2
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.2e-08 62.8 48 81.2
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 1.2e-08 62.8 48 75.0
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 1.6e-08 62.4 48 81.2
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 2.0e-08 62.0 47 76.6
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 2.0e-08 62.0 47 80.9
Sp7g11280 Schrenkiella parvula HOM05D017066 ORTHO05D005672 2.7e-08 61.6 41 82.9
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 2.7e-08 61.6 46 78.3
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 3.5e-08 61.2 48 81.2
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 3.5e-08 61.2 47 76.6
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 3.5e-08 61.2 41 82.9
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 4.5e-08 60.8 56 64.3
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 4.5e-08 60.8 42 83.3
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 5.9e-08 60.5 45 80.0
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 5.9e-08 60.5 44 79.5
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 5.9e-08 60.5 48 72.9
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 7.7e-08 60.1 46 78.3
Ah.05g178960 Amaranthus hybridus HOM05D005458 ORTHO05D005672 1.0e-07 59.7 44 81.8
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 1.3e-07 59.3 42 83.3
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 2.3e-07 58.5 46 76.1
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 5.0e-07 57.4 42 81.0
C08p07830 Brassica napus HOM05D005458 ORTHO05D005672 5.0e-07 57.4 41 78.0
BolC8t47637H Brassica oleracea HOM05D005458 ORTHO05D005672 5.0e-07 57.4 41 78.0
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 5.0e-07 57.4 48 72.9
Lj3g0027829 Lotus japonicus HOM05D005458 ORTHO05D005672 5.0e-07 57.4 46 76.1
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 8.6e-07 56.6 42 81.0
arahy.Tifrunner.gnm1.ann1.U1G5UA Arachis hypogaea HOM05D005458 ORTHO05D005672 1.1e-06 56.2 43 79.1
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.1e-06 56.2 42 78.6
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 1.5e-06 55.8 41 80.5
BcaC07g37341 Brassica carinata HOM05D005458 ORTHO05D005672 1.5e-06 55.8 40 77.5
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 1.5e-06 55.8 46 73.9
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 1.9e-06 55.5 42 78.6
Dinv27233 Davidia involucrata HOM05D012872 ORTHO05D005672 2.5e-06 55.1 40 75.0
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 2.5e-06 55.1 47 68.1
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 4.2e-06 54.3 39 82.1
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 4.2e-06 54.3 43 79.1
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 7.2e-06 53.5 46 67.4
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 9.5e-06 53.1 46 71.7


User provided reference genes

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