Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 3.3e-110 401.7 205 100.0
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 1.4e-44 183.7 216 58.3
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 9.1e-44 181.0 209 57.9
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.5e-43 180.3 212 57.5
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 2.0e-43 179.9 211 59.2
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 1.7e-42 176.8 211 55.9
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 5.0e-42 175.3 215 54.4
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 1.2e-40 170.6 213 55.4
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 5.2e-39 165.2 214 54.2
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 8.8e-39 164.5 211 55.5
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 9.7e-38 161.0 213 54.0
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 1.3e-37 160.6 213 55.4
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.4e-36 156.4 208 53.8
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.6e-35 153.7 212 52.4
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 2.0e-35 153.3 227 48.5
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 1.7e-34 150.2 215 52.6
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 5.0e-34 148.7 216 52.3
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 6.5e-34 148.3 220 48.6
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 2.5e-33 146.4 218 52.3
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 1.2e-32 144.1 234 48.7
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.2e-32 144.1 224 49.1
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.6e-32 143.7 217 48.8
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.7e-32 142.9 211 51.2
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 8.0e-32 141.4 214 49.1
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 5.2e-31 138.7 211 52.1
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 5.2e-31 138.7 211 52.1
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 8.8e-31 137.9 211 50.7
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 2.0e-30 136.7 216 51.9
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 7.5e-30 134.8 221 46.6
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 9.7e-30 134.4 212 50.9
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.7e-29 133.7 211 51.7
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 2.2e-29 133.3 225 47.6
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.8e-29 132.1 214 50.0
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 6.3e-29 131.7 209 49.3
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 1.4e-28 130.6 213 48.4
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 4.1e-28 129.0 214 51.9
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 7.0e-28 128.3 213 51.2
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 7.0e-28 128.3 217 48.4
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.2e-27 127.5 221 46.2
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.5e-27 125.6 222 47.7
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.5e-27 125.6 222 48.6
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 5.9e-27 125.2 219 46.6
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 7.7e-27 124.8 218 44.0
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 1.0e-26 124.4 219 46.6
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.3e-26 124.0 221 45.7
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.7e-26 123.6 220 45.9
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 1.7e-26 123.6 216 49.1
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.7e-26 123.6 212 50.0
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 1.7e-26 123.6 210 45.7
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 5.0e-26 122.1 218 47.7
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 6.5e-26 121.7 230 46.5
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 6.5e-26 121.7 210 45.2
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 6.5e-26 121.7 224 44.6
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 8.5e-26 121.3 218 45.0
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.1e-25 120.9 217 45.6
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.1e-25 120.9 210 46.7
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.5e-25 119.8 229 44.1
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 3.2e-25 119.4 213 46.5
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 7.2e-25 118.2 212 48.1
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 7.2e-25 118.2 224 43.3
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 9.4e-25 117.9 211 48.3
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 1.2e-24 117.5 218 42.2
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 1.2e-24 117.5 213 48.8
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.2e-24 117.5 220 44.5
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 1.6e-24 117.1 215 45.1
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 2.1e-24 116.7 172 48.8
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 3.6e-24 115.9 218 41.7
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 3.6e-24 115.9 218 41.7
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.6e-24 115.9 202 49.0
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.7e-24 115.5 228 43.9
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 6.1e-24 115.2 218 42.2
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 8.0e-24 114.8 221 43.0
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.0e-23 114.4 213 45.5
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 1.0e-23 114.4 211 45.5
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 1.4e-23 114.0 199 43.2
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.4e-23 114.0 222 43.7
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 1.4e-23 114.0 216 49.1
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 2.3e-23 113.2 211 47.4
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 4.0e-23 112.5 218 40.8
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 4.0e-23 112.5 218 40.8
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 5.2e-23 112.1 216 45.8
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 5.2e-23 112.1 212 46.7
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 8.8e-23 111.3 228 43.4
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 1.2e-22 110.9 211 44.1
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 2.6e-22 109.8 214 47.2
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 3.4e-22 109.4 218 43.6
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 3.4e-22 109.4 216 47.2
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 4.4e-22 109.0 218 45.9
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 5.7e-22 108.6 218 43.1
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 1.3e-21 107.5 213 45.5
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 1.7e-21 107.1 218 42.7
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 2.8e-21 106.3 220 45.0
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 2.8e-21 106.3 218 45.4
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 3.7e-21 105.9 218 43.1
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 3.7e-21 105.9 222 43.2
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 8.3e-21 104.8 219 42.0
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 8.3e-21 104.8 214 43.5
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 1.1e-20 104.4 149 54.4
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.1e-20 104.4 225 42.2
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 1.4e-20 104.0 130 56.9
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 2.4e-20 103.2 215 41.4
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 2.4e-20 103.2 215 41.4
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 2.4e-20 103.2 215 41.4
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 3.1e-20 102.8 224 42.0
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 3.1e-20 102.8 179 47.5
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 4.1e-20 102.4 197 43.1
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 9.1e-20 101.3 215 40.9
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 2.0e-19 100.1 230 43.5
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 2.7e-19 99.8 201 41.3
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 2.7e-19 99.8 199 40.7
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 3.5e-19 99.4 220 41.8
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 7.7e-19 98.2 123 53.7
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 1.0e-18 97.8 201 41.8
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 1.0e-18 97.8 201 41.8
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 2.3e-18 96.7 198 38.9
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 2.9e-18 96.3 171 41.5
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 6.5e-18 95.1 198 39.9
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 6.5e-18 95.1 225 41.3
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 6.5e-18 95.1 226 40.7
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.2e-17 92.8 196 43.4
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 5.5e-17 92.0 219 40.6
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 2.8e-16 89.7 190 39.5
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 3.6e-16 89.4 208 44.7
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 8.0e-16 88.2 210 41.0
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 1.0e-15 87.8 150 46.7
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 1.0e-15 87.8 214 40.7
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 1.4e-15 87.4 208 39.4
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 3.0e-15 86.3 213 37.6
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 5.2e-15 85.5 132 50.0
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 2.6e-14 83.2 217 39.6
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 2.6e-14 83.2 214 36.9
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 4.4e-14 82.4 218 39.9
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 4.4e-14 82.4 217 39.2
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 5.7e-14 82.0 126 48.4
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 9.8e-14 81.3 221 38.5
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.7e-13 80.5 218 33.5
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 4.9e-13 79.0 186 36.0
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 6.3e-13 78.6 181 40.9
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 8.3e-13 78.2 153 41.2
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 8.3e-13 78.2 208 38.0
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.1e-12 77.8 213 38.5
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 5.4e-12 75.5 218 38.5
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 2.7e-11 73.2 166 43.4
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 3.5e-11 72.8 227 39.2
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 4.5e-11 72.4 219 38.8
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 5.9e-11 72.0 219 36.1
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 7.8e-11 71.6 206 32.0
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 1.0e-10 71.2 227 38.8
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.3e-10 70.1 206 39.3
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.1e-09 67.8 154 42.2
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 1.1e-09 67.8 218 34.4
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 1.5e-09 67.4 97 46.4
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 2.5e-09 66.6 210 31.9
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 2.5e-09 66.6 121 43.8
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 3.3e-09 66.2 213 35.2
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 4.3e-09 65.9 125 44.8
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 4.3e-09 65.9 207 33.3
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 9.5e-09 64.7 209 33.5
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 1.2e-08 64.3 234 34.2
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.6e-08 63.9 153 40.5
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 2.1e-08 63.5 212 34.4
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 3.6e-08 62.8 146 42.5
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 8.0e-08 61.6 122 46.7
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 1.0e-07 61.2 108 46.3
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 1.8e-07 60.5 219 33.3
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 1.8e-07 60.5 72 48.6
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 6.8e-07 58.5 176 34.1
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 6.8e-07 58.5 207 32.9
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 1.5e-06 57.4 62 53.2
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 4.4e-06 55.8 113 45.1
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 7.5e-06 55.1 92 51.1
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 7.5e-06 55.1 79 46.8


User provided reference genes

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