Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 1.6e-169 599.4 300 100.0
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 1.6e-65 253.8 339 49.3
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 2.0e-52 210.3 320 45.3
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 1.2e-49 201.1 341 42.2
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 2.1e-49 200.3 346 41.3
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 4.7e-49 199.1 357 42.3
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 8.0e-49 198.4 343 42.0
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 8.0e-49 198.4 355 39.7
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 2.6e-47 193.4 349 39.8
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 1.3e-46 191.0 347 42.4
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 5.4e-45 185.7 335 43.9
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 5.4e-45 185.7 332 40.7
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 3.5e-44 183.0 357 37.8
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 9.5e-42 174.9 321 40.2
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 1.6e-41 174.1 361 40.7
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 1.4e-40 171.0 330 37.3
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 6.8e-40 168.7 400 34.5
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 1.5e-39 167.5 284 44.4
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 2.0e-39 167.2 306 39.2
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 2.6e-39 166.8 305 40.0
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 2.6e-39 166.8 337 40.9
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 2.6e-39 166.8 332 38.6
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 2.6e-39 166.8 262 43.5
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 3.4e-39 166.4 278 40.6
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 4.9e-38 162.5 333 37.5
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 6.4e-38 162.2 327 38.8
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 6.4e-38 162.2 347 36.6
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 1.9e-37 160.6 364 37.4
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 2.4e-37 160.2 350 36.9
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 7.1e-37 158.7 350 36.3
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.6e-36 157.5 326 38.3
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 2.1e-36 157.1 324 38.9
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 3.5e-36 156.4 331 38.4
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 1.0e-35 154.8 264 41.3
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 1.3e-35 154.5 332 37.3
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 1.3e-35 154.5 332 37.3
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 5.1e-35 152.5 311 39.2
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 8.6e-35 151.8 323 38.1
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 3.3e-34 149.8 302 39.1
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 3.3e-34 149.8 302 39.1
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 3.3e-34 149.8 302 39.1
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 1.2e-33 147.9 281 38.4
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 4.7e-33 146.0 325 37.2
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 4.7e-33 146.0 360 36.7
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 6.2e-33 145.6 313 38.3
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 1.4e-32 144.4 316 37.7
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 2.3e-32 143.7 327 34.9
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 2.3e-32 143.7 339 36.0
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 2.3e-32 143.7 313 38.7
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 3.1e-32 143.3 236 40.3
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 2.0e-31 140.6 365 32.1
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 4.4e-31 139.4 314 37.3
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 4.4e-31 139.4 301 36.9
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 7.6e-31 138.7 317 36.6
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 9.9e-31 138.3 321 36.4
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 1.7e-30 137.5 209 44.0
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 6.4e-30 135.6 313 35.5
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 1.1e-29 134.8 268 38.1
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 2.4e-29 133.7 209 42.1
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 3.2e-29 133.3 206 42.2
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 2.7e-28 130.2 218 41.3
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 3.5e-28 129.8 320 33.1
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 7.8e-28 128.6 285 38.2
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 2.3e-27 127.1 240 37.9
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 3.0e-27 126.7 210 41.9
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 1.5e-26 124.4 284 37.0
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 3.3e-26 123.2 248 37.1
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 3.3e-26 123.2 272 38.6
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 4.3e-26 122.9 265 35.5
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 9.6e-26 121.7 232 41.4
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 9.6e-26 121.7 323 34.4
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 1.2e-25 121.3 236 41.1
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 2.8e-25 120.2 242 38.8
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 6.2e-25 119.0 255 39.6
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 8.1e-25 118.6 239 35.6
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 1.1e-24 118.2 264 36.7
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 1.1e-24 118.2 255 38.8
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 1.1e-24 118.2 213 38.0
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 1.4e-24 117.9 255 39.2
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 1.8e-24 117.5 270 37.8
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 2.4e-24 117.1 194 45.4
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 1.5e-23 114.4 226 37.2
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 2.6e-23 113.6 233 36.9
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 5.8e-23 112.5 227 37.0
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 9.9e-23 111.7 315 33.3
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 1.3e-22 111.3 285 35.4
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 4.9e-22 109.4 292 34.6
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 1.1e-21 108.2 325 33.2
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 7.1e-21 105.5 210 41.0
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 7.1e-21 105.5 215 35.3
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 7.1e-21 105.5 257 35.0
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 2.1e-20 104.0 249 36.1
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 3.5e-20 103.2 257 36.2
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 1.0e-19 101.7 222 35.6
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 1.7e-19 100.9 222 37.8
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 2.3e-19 100.5 242 37.2
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 2.3e-19 100.5 269 33.8
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 3.0e-19 100.1 262 33.6
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 5.1e-19 99.4 255 35.3
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 6.6e-19 99.0 255 34.9
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 2.8e-17 93.6 238 34.0
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 9.9e-15 85.1 221 32.6
ECA233G2997 Erigeron canadensis HOM05D003457 ORTHO05D009249 9.9e-15 85.1 326 31.3
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 2.2e-14 84.0 200 35.0
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 1.4e-13 81.3 156 39.1
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 1.5e-10 71.2 236 28.8
Lsat_1_v5_gn_7_39641 Lactuca sativa HOM05D003457 ORTHO05D009249 1.3e-09 68.2 215 33.5
SEGI_37736 Sequoiadendron giganteum HOM05D013917 ORTHO05D013169 6.2e-09 65.9 294 26.2
Lsat_1_v5_gn_5_150000 Lactuca sativa HOM05D003457 ORTHO05D009249 1.3e-06 58.2 115 40.0
PSO063G5804 Papaver somniferum HOM05D003457 ORTHO05D009249 3.8e-06 56.6 197 30.5


User provided reference genes

Program Settings