Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 1.2e-58 229.6 107 100.0
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 7.8e-55 216.9 107 88.8
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 5.6e-53 210.7 107 88.8
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 7.3e-53 210.3 107 87.9
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 3.6e-52 208.0 106 86.8
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 4.7e-52 207.6 107 89.7
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 4.7e-52 207.6 106 88.7
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 8.1e-52 206.8 107 87.9
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 1.1e-51 206.5 107 89.7
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 1.1e-51 206.5 107 89.7
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.1e-51 206.5 107 85.0
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.1e-51 206.5 107 85.0
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 1.4e-51 206.1 107 86.0
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 2.3e-51 205.3 107 86.9
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 2.3e-51 205.3 107 86.9
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 2.3e-51 205.3 107 86.0
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 4.0e-51 204.5 107 86.0
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 4.0e-51 204.5 107 86.0
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 5.2e-51 204.1 107 85.0
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 5.2e-51 204.1 107 86.0
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 5.2e-51 204.1 107 86.0
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 5.2e-51 204.1 107 88.8
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 1.2e-50 203.0 107 86.9
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 2.0e-50 202.2 107 84.1
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 2.6e-50 201.8 107 85.0
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 7.5e-50 200.3 107 84.1
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 7.5e-50 200.3 106 85.8
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 7.5e-50 200.3 107 84.1
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 9.9e-50 199.9 107 85.0
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 1.7e-49 199.1 107 83.2
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 6.4e-49 197.2 108 83.3
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 8.3e-49 196.8 107 83.2
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 8.3e-49 196.8 108 84.3
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 1.9e-48 195.7 99 87.9
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 1.9e-48 195.7 99 87.9
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 1.9e-48 195.7 97 89.7
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 2.4e-48 195.3 97 89.7
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 2.4e-48 195.3 97 89.7
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 2.4e-48 195.3 107 86.0
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 2.4e-48 195.3 107 86.0
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 2.4e-48 195.3 107 86.0
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 3.2e-48 194.9 108 83.3
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 7.1e-48 193.7 97 87.6
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 9.2e-48 193.4 96 88.5
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 9.2e-48 193.4 97 89.7
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 1.6e-47 192.6 97 86.6
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 1.6e-47 192.6 108 80.6
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 2.1e-47 192.2 107 82.2
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 2.7e-47 191.8 107 81.3
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 4.6e-47 191.0 107 80.4
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 6.0e-47 190.7 100 88.0
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 6.0e-47 190.7 107 80.4
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 7.8e-47 190.3 96 90.6
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 1.0e-46 189.9 107 81.3
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 1.0e-46 189.9 100 86.0
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.3e-46 189.5 107 81.3
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 1.3e-46 189.5 107 82.2
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 1.7e-46 189.1 107 80.4
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 1.7e-46 189.1 106 82.1
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 2.3e-46 188.7 98 86.7
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 3.0e-46 188.3 107 79.4
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 3.0e-46 188.3 107 80.4
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 3.9e-46 188.0 107 78.5
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 3.9e-46 188.0 107 78.5
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 5.1e-46 187.6 107 78.5
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 5.1e-46 187.6 107 78.5
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 5.1e-46 187.6 107 78.5
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 6.6e-46 187.2 107 79.4
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 8.6e-46 186.8 102 85.3
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 1.1e-45 186.4 107 78.5
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 1.1e-45 186.4 107 78.5
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 1.1e-45 186.4 107 78.5
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.1e-45 186.4 108 83.3
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 1.1e-45 186.4 99 84.8
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 1.5e-45 186.0 107 78.5
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.5e-45 186.0 108 82.4
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 1.5e-45 186.0 108 81.5
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 2.5e-45 185.3 102 82.4
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 2.5e-45 185.3 107 81.3
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 3.3e-45 184.9 107 77.6
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 3.3e-45 184.9 107 77.6
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 3.3e-45 184.9 99 85.9
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 3.3e-45 184.9 108 82.4
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 4.3e-45 184.5 107 77.6
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 4.3e-45 184.5 106 78.3
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 5.6e-45 184.1 107 76.6
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 9.5e-45 183.3 107 77.6
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 9.5e-45 183.3 107 76.6
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 2.8e-44 181.8 107 77.6
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 2.8e-44 181.8 107 77.6
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 2.8e-44 181.8 107 77.6
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 2.8e-44 181.8 104 80.8
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 2.8e-44 181.8 105 77.1
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 3.6e-44 181.4 104 77.9
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 3.6e-44 181.4 101 80.2
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 4.7e-44 181.0 99 84.8
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 4.7e-44 181.0 93 89.2
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 6.2e-44 180.6 107 76.6
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 6.2e-44 180.6 107 76.6
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 6.2e-44 180.6 107 76.6
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 6.2e-44 180.6 107 77.6
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 8.1e-44 180.3 104 80.8
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 8.1e-44 180.3 104 77.9
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 8.1e-44 180.3 104 77.9
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 1.4e-43 179.5 109 76.1
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 1.4e-43 179.5 98 86.7
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 1.4e-43 179.5 105 80.0
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 1.4e-43 179.5 101 77.2
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 1.8e-43 179.1 107 78.5
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 2.4e-43 178.7 101 79.2
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 6.8e-43 177.2 96 86.5
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 6.8e-43 177.2 108 77.8
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 6.8e-43 177.2 108 77.8
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 6.8e-43 177.2 108 77.8
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 6.8e-43 177.2 108 77.8
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 6.8e-43 177.2 108 77.8
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 8.9e-43 176.8 95 83.2
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 8.9e-43 176.8 101 78.2
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 1.2e-42 176.4 97 83.5
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 1.5e-42 176.0 97 82.5
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 2.0e-42 175.6 101 80.2
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 2.6e-42 175.3 97 83.5
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 3.4e-42 174.9 97 79.4
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 7.6e-42 173.7 107 74.8
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 9.9e-42 173.3 97 79.4
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.7e-41 172.6 103 75.7
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 1.7e-41 172.6 101 77.2
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 6.4e-41 170.6 93 81.7
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 4.1e-40 167.9 104 74.0
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 5.4e-40 167.5 101 75.2
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 7.1e-40 167.2 104 73.1
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 7.8e-39 163.7 101 74.3
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 9.6e-37 156.8 78 89.7
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 2.8e-36 155.2 89 77.5
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.4e-35 152.9 94 73.4
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 4.2e-32 141.4 82 79.3
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 1.7e-30 136.0 68 88.2
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 9.6e-29 130.2 74 77.0
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 6.2e-28 127.5 74 81.1
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 6.9e-27 124.0 93 63.4
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.2e-26 123.2 93 63.4
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 2.2e-25 119.0 72 76.4
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 2.9e-25 118.6 83 65.1
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 3.8e-25 118.2 70 77.1
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 6.4e-25 117.5 69 81.2
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 1.9e-24 115.9 83 65.1
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 2.1e-23 112.5 84 57.1
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.8e-22 109.4 86 59.3
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 3.9e-22 108.2 103 55.3
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 1.5e-18 96.3 59 69.5
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 1.4e-16 89.7 76 57.9
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 1.6e-15 86.3 93 43.0
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 6.7e-14 80.9 50 76.0
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 8.7e-14 80.5 54 66.7
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 1.3e-09 66.6 84 40.5
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 1.7e-09 66.2 37 83.8
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.1e-08 63.5 49 61.2
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 1.4e-08 63.2 37 81.1
GSVIVG01008282001 Vitis vinifera HOM05D004512 ORTHO05D005355 3.0e-06 55.5 28 82.1


User provided reference genes

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