Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1266 Punica granatum HOM05D001653 ORTHO05D001751 2.2e-60 235.3 109 100.0
PGR142G2904 Punica granatum HOM05D001653 ORTHO05D001751 2.2e-33 145.6 87 79.3
Duzib132G0784 Durio zibethinus HOM05D001653 ORTHO05D001751 2.0e-18 95.9 97 53.6
Actinidia38984 Actinidia chinensis HOM05D001653 ORTHO05D001751 2.7e-18 95.5 79 60.8
Eucgr.I02786 Eucalyptus grandis HOM05D001653 ORTHO05D001751 4.5e-18 94.7 74 60.8
Nn5g27282 Nelumbo nucifera HOM05D001653 ORTHO05D001751 5.0e-17 91.3 79 51.9
CSS0009591 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 6.6e-17 90.9 85 55.3
GSVIVG01023217001 Vitis vinifera HOM05D001653 ORTHO05D001751 1.1e-16 90.1 79 53.2
Dinv29616 Davidia involucrata HOM05D001653 ORTHO05D001751 1.9e-16 89.4 79 55.7
QL02p102101 Quercus lobata HOM05D001653 ORTHO05D001751 1.9e-16 89.4 87 55.2
QL02p102618 Quercus lobata HOM05D001653 ORTHO05D001751 1.9e-16 89.4 87 55.2
QL02p101981 Quercus lobata HOM05D001653 ORTHO05D001751 7.3e-16 87.4 87 55.2
Cfa004464 Carpinus fangiana HOM05D001653 ORTHO05D001751 1.0e-14 83.6 87 49.4
QL02p101947 Quercus lobata HOM05D001653 ORTHO05D001751 1.0e-14 83.6 86 53.5
QL02p102580 Quercus lobata HOM05D001653 ORTHO05D001751 1.0e-14 83.6 86 53.5
MD08G1245400 Malus domestica HOM05D001653 ORTHO05D001751 1.4e-14 83.2 89 55.1
CSS0038289 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 2.3e-14 82.4 62 62.9
Dinv19433 Davidia involucrata HOM05D001653 ORTHO05D001751 2.3e-14 82.4 74 50.0
Potri.004G227200 Populus trichocarpa HOM05D001653 ORTHO05D001751 4.0e-14 81.6 87 47.1
Thecc.02G014100 Theobroma cacao HOM05D001653 ORTHO05D001751 4.0e-14 81.6 87 49.4
Haze_10021 Corylus avellana HOM05D001653 ORTHO05D001751 6.8e-14 80.9 87 49.4
vmacro01696 Vaccinium macrocarpon HOM05D001653 ORTHO05D001751 8.9e-14 80.5 80 52.5
vmacro22646 Vaccinium macrocarpon HOM05D001653 ORTHO05D001751 8.9e-14 80.5 80 52.5
Lj9A283T34 Lonicera japonica HOM05D001653 ORTHO05D001751 4.4e-13 78.2 74 50.0
QL02p102066 Quercus lobata HOM05D001653 ORTHO05D001751 4.4e-13 78.2 105 43.8
Rhsim11G0121200 Rhododendron simsii HOM05D001653 ORTHO05D001751 4.4e-13 78.2 79 49.4
RcHm_v2.0_Chr7g0241141 Rosa chinensis HOM05D001653 ORTHO05D001751 5.8e-13 77.8 87 47.1
COL.COLO4_17691 Corchorus olitorius HOM05D001653 ORTHO05D001751 7.5e-13 77.4 88 46.6
TWI59G1321 Tripterygium wilfordii HOM05D001653 ORTHO05D001751 1.3e-12 76.6 84 48.8
AL8G23850 Arabidopsis lyrata HOM05D001653 ORTHO05D001751 1.7e-12 76.3 87 48.3
Gohir.D12G044400 Gossypium hirsutum HOM05D001653 ORTHO05D001751 2.2e-12 75.9 88 45.5
Manes.10G115000 Manihot esculenta HOM05D001653 ORTHO05D001751 2.9e-12 75.5 60 63.3
Gorai.008G046700 Gossypium raimondii HOM05D001653 ORTHO05D001751 3.7e-12 75.1 88 45.5
Lalb_Chr13g0304461 Lupinus albus HOM05D001653 ORTHO05D001751 3.7e-12 75.1 62 58.1
FAN18G2341 Fragaria x ananassa HOM05D001653 ORTHO05D001751 4.9e-12 74.7 77 49.4
Hma1.2p1_0157F.1_g069000 Hydrangea macrophylla HOM05D001653 ORTHO05D001751 4.9e-12 74.7 61 59.0
Hma1.2p1_1368F.1_g278550 Hydrangea macrophylla HOM05D001653 ORTHO05D001751 4.9e-12 74.7 61 59.0
Rhsim01G0195500 Rhododendron simsii HOM05D001653 ORTHO05D001751 4.9e-12 74.7 63 54.0
TAR381G0969 Trochodendron aralioides HOM05D001653 ORTHO05D001751 4.9e-12 74.7 79 49.4
arahy.Tifrunner.gnm1.ann1.U9C9EB Arachis hypogaea HOM05D001653 ORTHO05D001751 8.3e-12 73.9 83 47.0
Ciclev10000199m.g Citrus clementina HOM05D001653 ORTHO05D001751 8.3e-12 73.9 87 48.3
Lj4g0025919 Lotus japonicus HOM05D001653 ORTHO05D001751 1.1e-11 73.6 72 52.8
vmacro19844 Vaccinium macrocarpon HOM05D001653 ORTHO05D001751 1.1e-11 73.6 62 56.5
Atru.chr6.388 Acer truncatum HOM05D001653 ORTHO05D001751 1.4e-11 73.2 87 44.8
Atru.chr6.438 Acer truncatum HOM05D001653 ORTHO05D001751 1.4e-11 73.2 87 44.8
FvH4_5g39140 Fragaria vesca HOM05D001653 ORTHO05D001751 1.4e-11 73.2 77 48.1
FAN13G2677 Fragaria x ananassa HOM05D001653 ORTHO05D001751 1.4e-11 73.2 77 46.8
MD15G1440400 Malus domestica HOM05D001653 ORTHO05D001751 1.9e-11 72.8 87 47.1
FAN08G1492 Fragaria x ananassa HOM05D001653 ORTHO05D001751 2.4e-11 72.4 77 48.1
Sp6g11440 Schrenkiella parvula HOM05D001653 ORTHO05D001751 2.4e-11 72.4 87 47.1
AT5G49900 Arabidopsis thaliana HOM05D001653 ORTHO05D001751 3.2e-11 72.0 87 46.0
Peaxi162Scf00011g01631 Petunia axillaris HOM05D001653 ORTHO05D001751 4.1e-11 71.6 80 48.8
Gohir.A12G045400 Gossypium hirsutum HOM05D001653 ORTHO05D001751 5.4e-11 71.2 88 46.6
Prupe.1G582500 Prunus persica HOM05D001653 ORTHO05D001751 5.4e-11 71.2 87 43.7
arahy.Tifrunner.gnm1.ann1.6L045R Arachis hypogaea HOM05D001653 ORTHO05D001751 7.0e-11 70.9 63 52.4
Lsat_1_v5_gn_7_77321 Lactuca sativa HOM05D001653 ORTHO05D001751 9.2e-11 70.5 56 55.4
THA.LOC104799827 Tarenaya hassleriana HOM05D001653 ORTHO05D001751 9.2e-11 70.5 87 44.8
GSVIVG01036381001 Vitis vinifera HOM05D001653 ORTHO05D001751 9.2e-11 70.5 61 54.1
Aqoxy5G00840 Aquilegia oxysepala HOM05D001653 ORTHO05D001751 1.2e-10 70.1 68 47.1
Sc23g0005030 Simmondsia chinensis HOM05D001653 ORTHO05D001751 1.2e-10 70.1 63 52.4
Potri.003G003400 Populus trichocarpa HOM05D001653 ORTHO05D001751 1.6e-10 69.7 84 45.2
Sabra01G0172500 Salix brachista HOM05D001653 ORTHO05D001751 1.6e-10 69.7 64 51.6
PGSC0003DMG401024877 Solanum tuberosum HOM05D001653 ORTHO05D001751 1.6e-10 69.7 80 48.8
CsaV3_5G014080 Cucumis sativus L. HOM05D001653 ORTHO05D001751 2.0e-10 69.3 87 37.9
Carub.0008s0976 Capsella rubella HOM05D001653 ORTHO05D001751 2.7e-10 68.9 93 45.2
Thhalv10012588m.g Eutrema salsugineum HOM05D001653 ORTHO05D001751 2.7e-10 68.9 87 44.8
ClCG11G000490 Citrullus lanatus HOM05D001653 ORTHO05D001751 3.5e-10 68.6 87 40.2
PSO017G6671 Papaver somniferum HOM05D001653 ORTHO05D001751 3.5e-10 68.6 79 41.8
DCAR_006658 Daucus carota HOM05D001653 ORTHO05D001751 4.6e-10 68.2 79 41.8
C03p33250 Brassica napus HOM05D001653 ORTHO05D001751 6.0e-10 67.8 87 43.7
BolC3t15647H Brassica oleracea HOM05D001653 ORTHO05D001751 6.0e-10 67.8 87 43.7
DCAR_029164 Daucus carota HOM05D001653 ORTHO05D001751 6.0e-10 67.8 88 43.2
HanXRQChr11g0329671 Helianthus annuus HOM05D001653 ORTHO05D001751 7.8e-10 67.4 68 48.5
BcaB01g02935 Brassica carinata HOM05D001653 ORTHO05D001751 1.0e-09 67.0 87 43.7
BcaC01g04846 Brassica carinata HOM05D001653 ORTHO05D001751 1.0e-09 67.0 87 43.7
ECA236G1434 Erigeron canadensis HOM05D001653 ORTHO05D001751 1.0e-09 67.0 78 44.9
Glyma.07G273300 Glycine max HOM05D001653 ORTHO05D001751 1.0e-09 67.0 60 51.7
Medtr4g134760 Medicago truncatula HOM05D001653 ORTHO05D001751 1.0e-09 67.0 65 49.2
Solyc01g103230.3 Solanum lycopersicum HOM05D001653 ORTHO05D001751 1.0e-09 67.0 80 46.2
Aa31LG3G6820 Aethionema arabicum HOM05D001653 ORTHO05D001751 1.3e-09 66.6 80 46.2
A03p27540 Brassica napus HOM05D001653 ORTHO05D001751 1.7e-09 66.2 87 42.5
Sopen01g045650 Solanum pennellii HOM05D001653 ORTHO05D001751 1.7e-09 66.2 80 46.2
PSO170G5767 Papaver somniferum HOM05D001653 ORTHO05D001751 2.3e-09 65.9 76 39.5
SGA_v2.0_scaffold131G34385 Striga asiatica HOM05D001653 ORTHO05D001751 2.3e-09 65.9 82 40.2
CAN.G855.32 Capsicum annuum HOM05D001653 ORTHO05D001751 5.0e-09 64.7 65 49.2
Lsat_1_v5_gn_7_77280 Lactuca sativa HOM05D001653 ORTHO05D001751 5.0e-09 64.7 71 46.5
BraA03t11967Z Brassica rapa HOM05D001653 ORTHO05D001751 6.6e-09 64.3 87 41.4
MBI03_g28418_MAGBIO Magnolia biondii HOM05D001653 ORTHO05D001751 6.6e-09 64.3 79 45.6
Cfa008088 Carpinus fangiana HOM05D001653 ORTHO05D001751 8.6e-09 63.9 55 54.5
Nitab4.5_0002546g0070 Nicotiana tabacum HOM05D001653 ORTHO05D001751 8.6e-09 63.9 63 50.8
Ca_13536_v3 Cicer arietinum L. HOM05D001653 ORTHO05D001751 1.1e-08 63.5 57 56.1
MELO3C026480.2 Cucumis melo HOM05D001653 ORTHO05D001751 1.1e-08 63.5 87 37.9
CARHR258820 Cardamine hirsuta HOM05D001653 ORTHO05D001751 1.5e-08 63.2 61 54.1
Gohir.A13G116100 Gossypium hirsutum HOM05D001653 ORTHO05D001751 1.5e-08 63.2 56 53.6
COL.COLO4_24884 Corchorus olitorius HOM05D001653 ORTHO05D001751 2.5e-08 62.4 55 49.1
Duzib177G0515 Durio zibethinus HOM05D001653 ORTHO05D001751 2.5e-08 62.4 77 44.2
Lsat_1_v5_gn_7_76900 Lactuca sativa HOM05D001653 ORTHO05D001751 2.5e-08 62.4 75 40.0
QL09p002073 Quercus lobata HOM05D001653 ORTHO05D001751 2.5e-08 62.4 55 56.4
Gohir.D13G119400 Gossypium hirsutum HOM05D001653 ORTHO05D001751 3.3e-08 62.0 56 53.6
Gorai.013G133800 Gossypium raimondii HOM05D001653 ORTHO05D001751 3.3e-08 62.0 56 53.6
Sed0024587 Sechium edule HOM05D001653 ORTHO05D001751 3.3e-08 62.0 70 44.3
Eucgr.F02980 Eucalyptus grandis HOM05D001653 ORTHO05D001751 5.6e-08 61.2 73 42.5
Potri.019G072800 Populus trichocarpa HOM05D001653 ORTHO05D001751 7.3e-08 60.8 80 41.2
Thecc.08G177200 Theobroma cacao HOM05D001653 ORTHO05D001751 7.3e-08 60.8 56 50.0
TWI75G0255 Tripterygium wilfordii HOM05D001653 ORTHO05D001751 7.3e-08 60.8 55 49.1
Cc02_g23410 Coffea canephora HOM05D001653 ORTHO05D001751 9.5e-08 60.5 79 39.2
Manes.02G207661 Manihot esculenta HOM05D001653 ORTHO05D001751 2.8e-07 58.9 79 40.5
SGA_v2.0_scaffold356G49800 Striga asiatica HOM05D001653 ORTHO05D001751 2.8e-07 58.9 69 40.6
Lj9A698T60 Lonicera japonica HOM05D001653 ORTHO05D001751 3.6e-07 58.5 60 46.7
CSS0012128 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 4.7e-07 58.2 66 42.4
ATR1089G086 Amborella trichopoda HOM05D001653 ORTHO05D001751 8.0e-07 57.4 75 40.0
CSS0019942 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 8.0e-07 57.4 84 36.9
Migut.B00734 Erythranthe guttata HOM05D001653 ORTHO05D001751 8.0e-07 57.4 68 41.2
CiPaw.03G015600 Carya illinoinensis HOM05D001653 ORTHO05D001751 1.1e-06 57.0 73 41.1
Nitab4.5_0001057g0190 Nicotiana tabacum HOM05D001653 ORTHO05D001751 1.1e-06 57.0 53 50.9
EL10Ac6g14027 Beta vulgaris HOM05D001653 ORTHO05D001751 1.4e-06 56.6 62 41.9
AUR62040148 Chenopodium quinoa HOM05D001653 ORTHO05D001751 1.4e-06 56.6 62 43.5
Nitab4.5_0013721g0010 Nicotiana tabacum HOM05D001653 ORTHO05D001751 1.4e-06 56.6 87 40.2
PSO210G6174 Papaver somniferum HOM05D001653 ORTHO05D001751 1.4e-06 56.6 67 41.8
Phvul.003G075400 Phaseolus vulgaris HOM05D001653 ORTHO05D001751 1.4e-06 56.6 61 47.5
PGSC0003DMG400001006 Solanum tuberosum HOM05D001653 ORTHO05D001751 1.4e-06 56.6 92 38.0
AUR62014272 Chenopodium quinoa HOM05D001653 ORTHO05D001751 2.3e-06 55.8 62 41.9
Ciclev10018742m.g Citrus clementina HOM05D001653 ORTHO05D001751 2.3e-06 55.8 55 52.7
Sabra19G0084100 Salix brachista HOM05D001653 ORTHO05D001751 3.1e-06 55.5 80 42.5
Migut.N00368 Erythranthe guttata HOM05D001653 ORTHO05D001751 4.0e-06 55.1 65 38.5
Nitab4.5_0000213g0230 Nicotiana tabacum HOM05D001653 ORTHO05D001751 4.0e-06 55.1 69 42.0
BcaB07g32997 Brassica carinata HOM05D001653 ORTHO05D001751 8.9e-06 53.9 61 41.0
PGR042G2062 Punica granatum HOM05D001653 ORTHO05D001751 8.9e-06 53.9 79 40.5
THA.LOC104806753 Tarenaya hassleriana HOM05D001653 ORTHO05D001751 8.9e-06 53.9 59 40.7


User provided reference genes

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