Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 1.4e-147 526.2 257 100.0
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 4.2e-107 391.7 262 76.3
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 3.7e-103 378.6 254 72.4
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 1.3e-100 370.2 254 69.3
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 1.1e-99 367.1 254 70.5
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 4.3e-99 365.2 224 76.8
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 5.6e-99 364.8 254 70.1
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 5.6e-99 364.8 261 70.1
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 1.2e-98 363.6 224 76.3
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 2.8e-98 362.5 255 70.6
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 4.7e-98 361.7 253 71.9
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 8.0e-98 360.9 224 75.4
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 4.0e-97 358.6 254 68.5
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 8.9e-97 357.5 226 75.7
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 2.0e-96 356.3 223 76.2
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 9.8e-96 354.0 254 67.7
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 2.9e-95 352.4 255 67.5
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 4.9e-95 351.7 254 67.3
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 4.9e-95 351.7 227 74.0
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 6.4e-95 351.3 254 68.9
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 1.1e-94 350.5 256 70.7
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 1.4e-94 350.1 273 66.7
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 1.4e-94 350.1 213 77.0
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 1.4e-94 350.1 241 71.0
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 4.1e-94 348.6 254 67.3
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 7.0e-94 347.8 251 69.7
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 7.0e-94 347.8 254 68.5
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 9.2e-94 347.4 252 68.3
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 2.7e-93 345.9 257 67.7
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 5.9e-93 344.7 242 70.2
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 7.8e-93 344.4 255 67.8
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 1.0e-92 344.0 218 75.7
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 1.7e-92 343.2 237 71.7
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 3.0e-92 342.4 242 69.8
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.5e-91 340.1 234 71.8
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 9.5e-91 337.4 255 65.5
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 1.6e-90 336.7 255 65.1
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 2.1e-90 336.3 254 64.6
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 2.3e-89 332.8 268 61.9
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 3.1e-89 332.4 269 63.9
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 1.5e-88 330.1 257 64.6
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 1.5e-88 330.1 227 72.2
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 2.0e-88 329.7 217 71.9
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 2.0e-88 329.7 276 61.6
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 3.4e-88 328.9 257 64.2
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 3.4e-88 328.9 238 67.6
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 9.8e-88 327.4 193 78.8
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.3e-87 327.0 284 58.1
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 2.2e-87 326.2 202 75.7
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 4.9e-87 325.1 270 62.2
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 4.9e-87 325.1 239 67.4
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 4.9e-87 325.1 238 66.0
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 8.3e-87 324.3 254 61.8
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 8.3e-87 324.3 215 72.1
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 5.4e-86 321.6 304 55.9
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 7.0e-86 321.2 235 67.7
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 2.0e-85 319.7 201 76.1
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 2.0e-85 319.7 249 61.4
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 4.6e-85 318.5 235 66.8
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 6.0e-85 318.2 317 55.2
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 7.8e-85 317.8 235 67.7
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.7e-84 316.6 232 66.4
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 2.3e-84 316.2 232 66.4
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 2.3e-84 316.2 215 73.5
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 5.0e-84 315.1 246 61.4
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 2.5e-83 312.8 261 61.3
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 2.5e-83 312.8 198 73.7
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 4.3e-83 312.0 254 60.2
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 9.5e-83 310.8 265 60.8
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 2.8e-82 309.3 246 63.4
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 2.8e-82 309.3 254 61.4
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 4.7e-82 308.5 256 59.8
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 4.7e-82 308.5 252 62.7
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 1.8e-81 306.6 333 51.1
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 2.3e-81 306.2 251 62.9
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 3.1e-81 305.8 248 62.5
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 3.1e-81 305.8 238 62.6
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 2.0e-80 303.1 247 61.1
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 2.6e-80 302.8 253 61.7
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 7.5e-80 301.2 261 61.3
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 2.9e-79 299.3 245 59.6
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 2.9e-79 299.3 245 59.6
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 8.3e-79 297.7 251 60.2
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 1.9e-78 296.6 249 59.0
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 2.4e-78 296.2 253 58.9
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 2.4e-78 296.2 253 58.9
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 2.4e-78 296.2 254 59.4
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 5.4e-78 295.0 254 57.1
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 6.0e-77 291.6 254 57.5
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 6.0e-77 291.6 195 68.7
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 7.8e-77 291.2 253 57.7
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 7.8e-77 291.2 262 55.7
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 1.3e-76 290.4 195 68.2
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 3.6e-74 282.3 164 79.9
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 6.2e-74 281.6 197 65.5
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 6.2e-74 281.6 258 55.0
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 8.1e-74 281.2 257 54.5
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 4.0e-73 278.9 215 62.8
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 5.2e-73 278.5 259 54.8
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 1.5e-72 276.9 219 62.1
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 4.4e-72 275.4 227 60.4
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 7.6e-72 274.6 196 63.8
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.2e-71 273.1 245 55.5
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 2.9e-71 272.7 311 47.9
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 2.4e-70 269.6 238 56.3
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 5.1e-68 261.9 258 54.7
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 4.7e-66 255.4 252 52.0
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 8.1e-66 254.6 223 57.0
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 2.2e-63 246.5 208 57.7
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.3e-60 236.5 244 48.4
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 1.4e-57 227.3 254 49.6
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 1.6e-42 177.2 153 58.8
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 2.0e-40 170.2 191 42.9
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 2.5e-38 163.3 231 36.4
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 4.6e-29 132.5 164 34.1
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 5.7e-27 125.6 195 34.4
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 2.0e-24 117.1 112 57.1
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 6.5e-15 85.5 101 46.5
Cre12.g551100 Chlamydomonas reinhardtii HOM05D006780 ORTHO05D008455 1.5e-06 57.8 120 30.8


User provided reference genes

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