Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 2.3e-60 235.3 118 100.0
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 7.0e-57 223.8 113 99.1
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 6.2e-37 157.5 101 74.3
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 6.8e-36 154.1 115 71.3
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 1.2e-35 153.3 118 66.9
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 1.5e-35 152.9 101 76.2
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 2.6e-35 152.1 86 81.4
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 4.4e-35 151.4 92 78.3
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 5.8e-35 151.0 115 67.8
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 5.8e-35 151.0 115 67.8
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 9.9e-35 150.2 106 69.8
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 1.7e-34 149.4 115 65.2
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 6.4e-34 147.5 104 73.1
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 6.4e-34 147.5 84 81.0
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 8.4e-34 147.1 115 63.5
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 1.1e-33 146.7 109 69.7
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 1.4e-33 146.4 106 68.9
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 1.9e-33 146.0 103 70.9
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 3.2e-33 145.2 88 78.4
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 3.2e-33 145.2 88 78.4
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 1.2e-32 143.3 103 66.0
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 1.6e-32 142.9 97 72.2
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 1.6e-32 142.9 103 72.8
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 2.7e-32 142.1 96 70.8
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 4.6e-32 141.4 97 71.1
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 6.0e-32 141.0 84 76.2
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 6.0e-32 141.0 83 79.5
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 6.6e-31 137.5 84 76.2
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 1.5e-30 136.3 85 71.8
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 1.5e-30 136.3 106 66.0
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 1.5e-30 136.3 87 72.4
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 2.5e-30 135.6 103 63.1
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 7.3e-30 134.0 92 72.8
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 1.2e-29 133.3 100 68.0
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 2.8e-29 132.1 115 60.9
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 3.6e-29 131.7 87 66.7
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 4.7e-29 131.3 85 67.1
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 8.1e-29 130.6 109 61.5
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 8.1e-29 130.6 105 63.8
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 8.1e-29 130.6 91 69.2
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 1.1e-28 130.2 92 66.3
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 1.1e-28 130.2 88 67.0
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 8.9e-28 127.1 103 59.2
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 8.9e-28 127.1 103 59.2
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 8.9e-28 127.1 91 65.9
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 4.4e-27 124.8 84 66.7
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 4.4e-27 124.8 81 70.4
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 5.8e-27 124.4 104 60.6
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 2.9e-26 122.1 83 67.5
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 2.9e-26 122.1 82 65.9
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 2.9e-26 122.1 103 62.1
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 6.4e-26 120.9 88 67.0
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 6.4e-26 120.9 106 54.7
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 8.4e-26 120.6 105 57.1
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.1e-25 120.2 84 63.1
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 1.4e-25 119.8 106 60.4
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.9e-25 119.4 88 65.9
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 4.2e-25 118.2 87 64.4
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 5.4e-25 117.9 91 64.8
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 1.6e-24 116.3 88 65.9
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 2.1e-24 115.9 102 60.8
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 2.7e-24 115.5 88 64.8
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 2.7e-24 115.5 163 42.9
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 3.5e-24 115.2 88 63.6
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 3.5e-24 115.2 88 65.9
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 4.6e-24 114.8 118 54.2
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 4.6e-24 114.8 118 54.2
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 6.0e-24 114.4 96 60.4
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 7.8e-24 114.0 89 62.9
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 1.0e-23 113.6 91 61.5
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 1.0e-23 113.6 162 45.1
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 1.0e-23 113.6 94 60.6
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 1.3e-23 113.2 90 60.0
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 3.9e-23 111.7 88 62.5
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 6.6e-23 110.9 89 61.8
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.3e-21 106.7 115 53.9
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 2.8e-21 105.5 104 59.6
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 3.6e-21 105.1 75 70.7
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 3.6e-21 105.1 154 42.2
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 6.2e-21 104.4 78 61.5
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 3.1e-20 102.1 165 42.4
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 5.3e-20 101.3 94 55.3
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 9.0e-20 100.5 145 44.1
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 1.2e-19 100.1 112 46.4
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 1.2e-19 100.1 94 56.4
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 1.2e-19 100.1 94 56.4
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 7.6e-19 97.4 62 71.0
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 2.9e-18 95.5 58 74.1
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 8.4e-18 94.0 58 70.7
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 8.4e-18 94.0 73 60.3
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 1.1e-17 93.6 72 56.9
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 4.6e-16 88.2 61 62.3
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 5.1e-15 84.7 111 43.2
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 5.6e-14 81.3 49 73.5
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 9.6e-14 80.5 48 75.0
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 1.3e-13 80.1 71 56.3
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 2.1e-13 79.3 49 69.4
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 4.8e-13 78.2 84 50.0
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 4.8e-13 78.2 54 64.8
MD00G1188300 Malus domestica HOM05D006152 ORTHO05D029506 1.8e-12 76.3 60 71.7
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.8e-12 76.3 75 53.3
FAN19G2321 Fragaria x ananassa HOM05D006152 ORTHO05D029506 5.3e-12 74.7 56 69.6
FvH4_1g01381 Fragaria vesca HOM05D006152 ORTHO05D029506 6.9e-12 74.3 57 68.4
FAN26G1951 Fragaria x ananassa HOM05D006152 ORTHO05D029506 6.9e-12 74.3 54 70.4
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 9.0e-12 73.9 54 63.0
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 9.0e-12 73.9 48 70.8
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 2.6e-11 72.4 49 63.3
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 4.5e-11 71.6 49 65.3
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 7.6e-11 70.9 83 47.0
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 5.5e-09 64.7 39 71.8
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 3.5e-08 62.0 36 72.2
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 6.0e-08 61.2 39 66.7
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 6.0e-08 61.2 39 66.7
FAN19G0239 Fragaria x ananassa HOM05D006152 ORTHO05D045810 3.9e-07 58.5 51 66.7
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 9.6e-06 53.9 52 55.8


User provided reference genes

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