Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 2.9e-244 848.2 446 100.0
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 2.2e-220 768.8 441 90.5
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 1.2e-218 763.1 441 89.1
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 2.7e-218 761.9 441 89.1
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 6.0e-218 760.8 441 88.7
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 1.8e-217 759.2 441 88.9
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 3.9e-217 758.1 441 89.3
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 8.7e-217 756.9 441 89.3
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 3.3e-216 755.0 441 88.9
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 5.6e-216 754.2 441 88.4
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 5.6e-216 754.2 441 88.2
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 7.4e-216 753.8 441 88.9
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 7.4e-216 753.8 441 88.4
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 1.3e-215 753.1 441 89.3
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.6e-215 752.7 441 88.2
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 3.1e-214 748.4 443 87.8
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.2e-213 746.5 443 88.9
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 1.2e-213 746.5 441 88.0
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 1.5e-213 746.1 441 87.8
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 1.5e-213 746.1 441 88.0
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 1.5e-213 746.1 441 88.0
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 2.6e-213 745.3 443 88.0
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 3.8e-212 741.5 441 87.3
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 3.2e-211 738.4 441 88.0
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 5.5e-211 737.6 441 86.8
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 9.3e-211 736.9 441 86.8
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 1.2e-210 736.5 441 86.6
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 1.2e-210 736.5 441 86.6
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 1.6e-210 736.1 441 87.8
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 2.1e-210 735.7 441 86.2
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 2.7e-210 735.3 441 86.4
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 1.0e-209 733.4 442 86.0
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 1.3e-209 733.0 441 85.9
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 6.7e-209 730.7 441 85.7
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 8.7e-209 730.3 441 85.7
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 1.9e-208 729.2 441 85.0
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 3.3e-208 728.4 439 85.4
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 5.7e-208 727.6 442 85.7
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 9.7e-208 726.9 442 85.7
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 1.3e-207 726.5 441 85.9
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 1.3e-207 726.5 421 91.4
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 1.3e-207 726.5 441 86.4
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 3.7e-207 724.9 441 84.8
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 6.3e-207 724.2 441 85.3
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 1.4e-206 723.0 478 80.5
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 1.8e-206 722.6 442 85.3
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 3.1e-206 721.8 441 87.5
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 3.1e-206 721.8 441 85.7
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 5.3e-206 721.1 441 86.2
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 9.0e-206 720.3 465 82.8
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 1.2e-205 719.9 435 85.7
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 8.5e-204 713.8 441 84.8
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 1.9e-203 712.6 478 79.5
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 2.5e-203 712.2 441 85.3
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 2.5e-203 712.2 441 83.7
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 2.5e-203 712.2 441 85.0
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 5.5e-203 711.1 418 88.3
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 1.2e-202 709.9 441 85.3
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 2.7e-202 708.8 441 83.4
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 4.6e-202 708.0 441 83.4
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 6.1e-202 707.6 441 83.2
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 3.0e-201 705.3 441 83.2
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 3.3e-200 701.8 441 83.0
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 4.3e-200 701.4 441 83.0
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 7.4e-200 700.7 441 83.2
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 1.4e-198 696.4 517 73.9
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.8e-198 696.0 441 82.5
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.8e-198 696.0 441 82.1
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 5.3e-198 694.5 441 82.5
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 6.9e-198 694.1 441 82.1
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 6.9e-198 694.1 441 82.1
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 6.9e-198 694.1 441 82.1
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 6.9e-198 694.1 441 82.1
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.2e-197 693.3 441 82.3
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 2.0e-197 692.6 441 81.9
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 1.0e-196 690.3 441 81.0
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 2.9e-196 688.7 441 82.1
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 8.5e-196 687.2 441 80.7
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 1.9e-195 686.0 442 82.1
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 1.9e-195 686.0 442 82.1
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 1.9e-195 686.0 441 82.5
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 3.2e-195 685.3 441 82.1
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 1.0e-193 680.2 443 81.7
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.4e-193 679.9 462 79.2
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 6.7e-193 677.6 418 85.6
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 8.8e-193 677.2 465 78.1
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.5e-192 676.4 441 81.6
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 4.4e-192 674.9 469 76.8
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 4.4e-192 674.9 470 78.1
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 1.1e-190 670.2 418 84.0
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 1.1e-190 670.2 418 84.0
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 3.2e-187 658.7 423 82.0
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 2.7e-186 655.6 464 75.6
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 5.9e-181 637.9 369 89.7
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 1.3e-175 620.2 441 76.2
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 1.5e-171 606.7 373 84.5
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 3.2e-171 605.5 350 88.6
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 4.2e-171 605.1 443 71.3
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 7.5e-168 594.3 443 74.0
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 7.7e-165 584.3 355 85.6
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 2.5e-163 579.3 374 81.8
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 1.1e-158 563.9 346 86.7
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 2.0e-157 559.7 435 66.7
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 4.6e-149 531.9 312 91.0
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 8.6e-148 527.7 442 61.1
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 2.5e-147 526.2 441 65.8
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 1.2e-136 490.7 312 80.1
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 5.8e-136 488.4 296 88.9
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 9.2e-134 481.1 365 70.7
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.8e-129 466.8 281 88.6
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 1.0e-108 397.9 296 75.0
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 5.5e-94 349.0 217 85.7
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 9.0e-89 331.6 312 63.1
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.6e-85 320.9 182 86.3
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 1.5e-83 314.3 238 72.3
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.7e-82 310.8 173 86.7
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 8.5e-79 298.5 301 57.5
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.7e-74 284.3 210 61.4
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 8.2e-74 282.0 478 38.1
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.2e-59 235.0 265 52.8
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 1.8e-57 227.6 195 68.2
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.7e-53 213.8 403 40.4
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 8.8e-52 208.8 132 86.4
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 9.5e-46 188.7 105 83.8
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 2.8e-45 187.2 107 83.2
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 2.3e-44 184.1 312 38.1
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 1.7e-42 177.9 468 31.2
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 3.7e-42 176.8 111 83.8
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 4.9e-42 176.4 112 86.6
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 5.8e-35 152.9 91 90.1
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.9e-31 140.2 76 90.8
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 4.0e-28 130.2 74 87.8
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.0e-27 127.9 83 83.1
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 4.4e-27 126.7 81 81.5
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 5.8e-27 126.3 72 87.5
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 2.2e-26 124.4 72 84.7
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 2.9e-26 124.0 72 83.3
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 7.1e-25 119.4 76 77.6
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 1.3e-23 115.2 99 66.7
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 6.6e-23 112.8 57 91.2
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 2.5e-22 110.9 79 73.4
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.7e-21 106.7 63 84.1
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.3e-20 104.4 57 86.0
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.1e-14 85.5 56 82.1
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 1.9e-14 84.7 52 84.6
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 3.6e-13 80.5 52 84.6
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 4.7e-13 80.1 74 59.5
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 6.2e-13 79.7 46 93.5
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 5.2e-12 76.6 44 88.6
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 3.3e-06 57.4 33 90.9


User provided reference genes

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