Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1158 Punica granatum HOM05D004456 ORTHO05D005287 4.4e-65 251.1 126 100.0
PGR073G0006 Punica granatum HOM05D004456 ORTHO05D005287 1.7e-64 249.2 126 99.2
PGR073G0001 Punica granatum HOM05D004456 ORTHO05D005287 3.7e-64 248.1 126 98.4
PGR073G0004 Punica granatum HOM05D004456 ORTHO05D005287 1.4e-63 246.1 126 97.6
PGR073G0005 Punica granatum HOM05D004456 ORTHO05D005287 1.4e-63 246.1 126 97.6
PGR087G0002 Punica granatum HOM05D004456 ORTHO05D005287 4.5e-62 241.1 126 96.0
PGR087G0004 Punica granatum HOM05D004456 ORTHO05D005287 4.5e-62 241.1 126 96.0
PGR142G0123 Punica granatum HOM05D004456 ORTHO05D005287 1.7e-61 239.2 125 95.2
PGR142G2466 Punica granatum HOM05D004456 ORTHO05D005287 3.6e-59 231.5 126 93.7
PGR142G0749 Punica granatum HOM05D004456 ORTHO05D005287 4.7e-59 231.1 125 92.0
PGR142G0549 Punica granatum HOM05D004456 ORTHO05D005287 8.0e-59 230.3 126 92.9
PGR142G2683 Punica granatum HOM05D004456 ORTHO05D005287 8.9e-58 226.9 126 92.1
PGR142G0707 Punica granatum HOM05D004456 ORTHO05D005287 2.6e-57 225.3 126 89.7
PGR142G2513 Punica granatum HOM05D004456 ORTHO05D005287 4.4e-57 224.6 126 88.9
PGR142G2293 Punica granatum HOM05D004456 ORTHO05D005287 2.9e-56 221.9 126 88.1
PGR142G2495 Punica granatum HOM05D004456 ORTHO05D005287 4.1e-55 218.0 126 89.7
Eucgr.B03760 Eucalyptus grandis HOM05D004456 ORTHO05D005287 7.8e-54 213.8 126 86.5
Ciclev10029584m.g Citrus clementina HOM05D004456 ORTHO05D005287 1.3e-53 213.0 126 84.1
Sabra17G0098500 Salix brachista HOM05D004456 ORTHO05D005287 2.9e-53 211.8 121 86.8
Potri.017G119300 Populus trichocarpa HOM05D004456 ORTHO05D005287 3.9e-53 211.5 121 86.8
PGR142G3851 Punica granatum HOM05D004456 ORTHO05D005287 8.6e-53 210.3 110 95.5
Lalb_Chr04g0249811 Lupinus albus HOM05D004456 ORTHO05D005287 1.5e-52 209.5 121 86.8
arahy.Tifrunner.gnm1.ann1.PTU9AS Arachis hypogaea HOM05D004456 ORTHO05D005287 2.5e-52 208.8 121 86.8
arahy.Tifrunner.gnm1.ann1.VAHF8H Arachis hypogaea HOM05D004456 ORTHO05D005287 2.5e-52 208.8 121 86.8
Manes.03G095700 Manihot esculenta HOM05D004456 ORTHO05D005287 2.5e-52 208.8 126 83.3
Lalb_Chr10g0105771 Lupinus albus HOM05D004456 ORTHO05D005287 7.3e-52 207.2 121 86.0
Phvul.009G196700 Phaseolus vulgaris HOM05D004456 ORTHO05D005287 9.5e-52 206.8 120 86.7
Atru.chr8.947 Acer truncatum HOM05D004456 ORTHO05D005287 1.2e-51 206.5 126 81.0
Glyma.02G272000 Glycine max HOM05D004456 ORTHO05D005287 1.2e-51 206.5 120 85.8
Medtr0027s0250 Medicago truncatula HOM05D004456 ORTHO05D005287 1.2e-51 206.5 120 85.8
Medtr5g087380 Medicago truncatula HOM05D004456 ORTHO05D005287 1.2e-51 206.5 120 85.8
ClCG02G018700 Citrullus lanatus HOM05D004456 ORTHO05D005287 2.1e-51 205.7 118 86.4
MELO3C019631.2 Cucumis melo HOM05D004456 ORTHO05D005287 2.1e-51 205.7 118 86.4
CsaV3_6G013470 Cucumis sativus L. HOM05D004456 ORTHO05D005287 3.6e-51 204.9 118 85.6
Prupe.1G563700 Prunus persica HOM05D004456 ORTHO05D005287 3.6e-51 204.9 126 82.5
Prupe.4G128400 Prunus persica HOM05D004456 ORTHO05D005287 3.6e-51 204.9 126 82.5
CANSAT35G0656 Cannabis sativa HOM05D004456 ORTHO05D005287 4.7e-51 204.5 126 81.7
CANSAT56G2838 Cannabis sativa HOM05D004456 ORTHO05D005287 4.7e-51 204.5 126 81.7
Ca_06131_v3 Cicer arietinum L. HOM05D004456 ORTHO05D005287 4.7e-51 204.5 121 84.3
Gohir.D11G338800 Gossypium hirsutum HOM05D004456 ORTHO05D005287 4.7e-51 204.5 126 82.5
Gorai.007G368500 Gossypium raimondii HOM05D004456 ORTHO05D005287 4.7e-51 204.5 126 82.5
VMungo1309G1322 Vigna mungo HOM05D004456 ORTHO05D005287 4.7e-51 204.5 120 85.0
LjContig00564g0013918 Lotus japonicus HOM05D004456 ORTHO05D005287 6.2e-51 204.1 121 83.5
TPR.G29918 Trifolium pratense HOM05D004456 ORTHO05D005287 6.2e-51 204.1 120 85.0
Thecc.06G049600 Theobroma cacao HOM05D004456 ORTHO05D005287 8.0e-51 203.8 126 81.0
Sed0012483 Sechium edule HOM05D004456 ORTHO05D005287 1.0e-50 203.4 126 81.0
Haze_16244 Corylus avellana HOM05D004456 ORTHO05D005287 1.4e-50 203.0 126 82.5
COL.COLO4_26811 Corchorus olitorius HOM05D004456 ORTHO05D005287 1.8e-50 202.6 126 81.7
Thhalv10009114m.g Eutrema salsugineum HOM05D004456 ORTHO05D005287 1.8e-50 202.6 121 83.5
Sp1g14890 Schrenkiella parvula HOM05D004456 ORTHO05D005287 1.8e-50 202.6 121 83.5
Sed0010742 Sechium edule HOM05D004456 ORTHO05D005287 1.8e-50 202.6 118 85.6
THA.LOC104812342 Tarenaya hassleriana HOM05D004456 ORTHO05D005287 1.8e-50 202.6 121 83.5
TAR374G0177 Trochodendron aralioides HOM05D004456 ORTHO05D005287 1.8e-50 202.6 126 81.0
CiPaw.01G092700 Carya illinoinensis HOM05D004456 ORTHO05D005287 2.3e-50 202.2 126 81.7
Aa31LG7G1200 Aethionema arabicum HOM05D004456 ORTHO05D005287 3.1e-50 201.8 121 82.6
Duzib235G0097 Durio zibethinus HOM05D004456 ORTHO05D005287 3.1e-50 201.8 126 80.2
TAR622G1262 Trochodendron aralioides HOM05D004456 ORTHO05D005287 3.1e-50 201.8 125 80.8
BcaB02g06679 Brassica carinata HOM05D004456 ORTHO05D005287 5.2e-50 201.1 119 84.0
Dinv05126 Davidia involucrata HOM05D004456 ORTHO05D005287 6.8e-50 200.7 126 80.2
Gohir.A11G319600 Gossypium hirsutum HOM05D004456 ORTHO05D005287 6.8e-50 200.7 126 80.2
HanXRQChr03g0087831 Helianthus annuus HOM05D004456 ORTHO05D005287 6.8e-50 200.7 126 80.2
Solyc02g069840.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 6.8e-50 200.7 123 81.3
Sopen02g019000 Solanum pennellii HOM05D004456 ORTHO05D005287 6.8e-50 200.7 123 81.3
BcaC07g38811 Brassica carinata HOM05D004456 ORTHO05D005287 8.9e-50 200.3 121 81.8
A08p31300 Brassica napus HOM05D004456 ORTHO05D005287 8.9e-50 200.3 121 81.8
C08p17530 Brassica napus HOM05D004456 ORTHO05D005287 8.9e-50 200.3 121 81.8
BolC8t49379H Brassica oleracea HOM05D004456 ORTHO05D005287 8.9e-50 200.3 121 81.8
PGSC0003DMG400021190 Solanum tuberosum HOM05D004456 ORTHO05D005287 8.9e-50 200.3 123 80.5
Aqoxy3G00192 Aquilegia oxysepala HOM05D004456 ORTHO05D005287 1.2e-49 199.9 126 80.2
ECA246G0212 Erigeron canadensis HOM05D004456 ORTHO05D005287 1.2e-49 199.9 126 80.2
AT1G16740 Arabidopsis thaliana HOM05D004456 ORTHO05D005287 1.5e-49 199.5 121 82.6
A06p12700 Brassica napus HOM05D004456 ORTHO05D005287 1.5e-49 199.5 121 81.8
C05p15000 Brassica napus HOM05D004456 ORTHO05D005287 1.5e-49 199.5 121 81.8
BolC5t30215H Brassica oleracea HOM05D004456 ORTHO05D005287 1.5e-49 199.5 121 81.8
BraA06t24430Z Brassica rapa HOM05D004456 ORTHO05D005287 1.5e-49 199.5 121 81.8
Carub.0001s1648 Capsella rubella HOM05D004456 ORTHO05D005287 1.5e-49 199.5 121 82.6
TWI81G0537 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 2.6e-49 198.7 118 83.9
AL1G28910 Arabidopsis lyrata HOM05D004456 ORTHO05D005287 3.4e-49 198.4 121 81.8
DCAR_003856 Daucus carota HOM05D004456 ORTHO05D005287 3.4e-49 198.4 126 79.4
Hma1.2p1_0333F.1_g128240 Hydrangea macrophylla HOM05D004456 ORTHO05D005287 3.4e-49 198.4 126 80.2
MD10G1216300 Malus domestica HOM05D004456 ORTHO05D005287 4.4e-49 198.0 126 80.2
BcaB03g13034 Brassica carinata HOM05D004456 ORTHO05D005287 5.8e-49 197.6 121 81.8
BraA08t35053Z Brassica rapa HOM05D004456 ORTHO05D005287 5.8e-49 197.6 121 81.0
CARHR017200 Cardamine hirsuta HOM05D004456 ORTHO05D005287 5.8e-49 197.6 121 81.8
HanXRQChr17g0543051 Helianthus annuus HOM05D004456 ORTHO05D005287 5.8e-49 197.6 123 79.7
Nitab4.5_0004615g0060 Nicotiana tabacum HOM05D004456 ORTHO05D005287 9.8e-49 196.8 123 79.7
Oeu041103.1 Olea europaea HOM05D004456 ORTHO05D005287 9.8e-49 196.8 126 81.0
Nitab4.5_0001225g0030 Nicotiana tabacum HOM05D004456 ORTHO05D005287 1.3e-48 196.4 123 79.7
Oeu015180.1 Olea europaea HOM05D004456 ORTHO05D005287 2.2e-48 195.7 126 81.0
TWI60G0757 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 2.9e-48 195.3 128 78.9
CSS0000388 Camellia sinensis var. sinensis HOM05D004456 ORTHO05D005287 4.9e-48 194.5 118 83.9
Lsat_1_v5_gn_4_69821 Lactuca sativa HOM05D004456 ORTHO05D005287 6.4e-48 194.1 126 77.0
CAN.G79.42 Capsicum annuum HOM05D004456 ORTHO05D005287 8.3e-48 193.7 124 79.0
Psat2g023600 Pisum sativum HOM05D004456 ORTHO05D005287 8.3e-48 193.7 120 82.5
Actinidia13485 Actinidia chinensis HOM05D004456 ORTHO05D005287 1.1e-47 193.4 118 81.4
MSTRG.14797 Avicennia marina HOM05D004456 ORTHO05D005287 1.1e-47 193.4 118 82.2
Cc09_g08010 Coffea canephora HOM05D004456 ORTHO05D005287 1.1e-47 193.4 123 81.3
CDE04G1757 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 1.4e-47 193.0 118 83.1
CDE08G1311 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 1.4e-47 193.0 118 83.1
GSVIVG01015827001 Vitis vinifera HOM05D004456 ORTHO05D005287 1.4e-47 193.0 123 78.9
ATR0618G343 Amborella trichopoda HOM05D004456 ORTHO05D005287 1.9e-47 192.6 121 81.0
FAN16G3308 Fragaria x ananassa HOM05D004456 ORTHO05D005287 1.9e-47 192.6 123 78.9
MBI03_g42617_MAGBIO Magnolia biondii HOM05D004456 ORTHO05D005287 1.9e-47 192.6 126 79.4
SalBow7G3040 Salvia bowleyana HOM05D004456 ORTHO05D005287 1.9e-47 192.6 118 82.2
Lsat_1_v5_gn_1_42081 Lactuca sativa HOM05D004456 ORTHO05D005287 2.4e-47 192.2 123 77.2
Migut.M01926 Erythranthe guttata HOM05D004456 ORTHO05D005287 3.2e-47 191.8 126 79.4
FAN25G2185 Fragaria x ananassa HOM05D004456 ORTHO05D005287 3.2e-47 191.8 123 78.9
RcHm_v2.0_Chr5g0023421 Rosa chinensis HOM05D004456 ORTHO05D005287 4.1e-47 191.4 126 77.8
Hund17691 Selenicereus undatus HOM05D004456 ORTHO05D005287 4.1e-47 191.4 121 80.2
SGA_v2.0_scaffold223G42863 Striga asiatica HOM05D004456 ORTHO05D005287 4.1e-47 191.4 126 79.4
FvH4_3g14110 Fragaria vesca HOM05D004456 ORTHO05D005287 5.4e-47 191.0 123 78.0
FAN11G1980 Fragaria x ananassa HOM05D004456 ORTHO05D005287 5.4e-47 191.0 123 78.0
HPP92_025894 Vanilla planifolia HOM05D004456 ORTHO05D005287 5.4e-47 191.0 123 79.7
Migut.M01892 Erythranthe guttata HOM05D004456 ORTHO05D005287 9.2e-47 190.3 126 78.6
vmacro03444 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 9.2e-47 190.3 120 79.2
Zm00001eb353650 Zea mays HOM05D004456 ORTHO05D005287 9.2e-47 190.3 112 84.8
Os05g0528200 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 1.2e-46 189.9 112 84.8
Rhsim05G0148000 Rhododendron simsii HOM05D004456 ORTHO05D005287 1.2e-46 189.9 123 78.9
Ah.06g192000 Amaranthus hybridus HOM05D004456 ORTHO05D005287 1.6e-46 189.5 123 79.7
PSO384G3508 Papaver somniferum HOM05D004456 ORTHO05D005287 1.6e-46 189.5 118 78.8
unitig_37.g12076 Utricularia gibba HOM05D004456 ORTHO05D005287 1.6e-46 189.5 118 80.5
PSO339G5129 Papaver somniferum HOM05D004456 ORTHO05D005287 2.7e-46 188.7 118 78.8
FAN21G1444 Fragaria x ananassa HOM05D004456 ORTHO05D005287 3.5e-46 188.3 123 77.2
Os01g0734100 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 3.5e-46 188.3 118 81.4
unitig_92.g28171 Utricularia gibba HOM05D004456 ORTHO05D005287 3.5e-46 188.3 118 79.7
vmacro03391 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 6.0e-46 187.6 123 77.2
Sc17g0004630 Simmondsia chinensis HOM05D004456 ORTHO05D005287 1.0e-45 186.8 123 78.9
EL10Ac1g00574 Beta vulgaris HOM05D004456 ORTHO05D005287 5.0e-45 184.5 110 84.5
AUR62005032 Chenopodium quinoa HOM05D004456 ORTHO05D005287 1.9e-44 182.6 121 77.7
EL10Ac4g09241 Beta vulgaris HOM05D004456 ORTHO05D005287 4.3e-44 181.4 121 77.7
AUR62000936 Chenopodium quinoa HOM05D004456 ORTHO05D005287 2.1e-43 179.1 121 76.9
Nn7g36646 Nelumbo nucifera HOM05D004456 ORTHO05D005287 1.2e-41 173.3 123 74.0
Pp3c20_1830 Physcomitrium patens HOM05D004456 ORTHO05D005287 7.1e-39 164.1 106 77.4
Mapoly0002s0127 Marchantia polymorpha HOM05D004456 ORTHO05D005287 1.2e-38 163.3 106 75.5
SMO358G0062 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 6.2e-35 151.0 115 65.2
AagrBONN_evm.TU.Sc2ySwM_228.5758 Anthoceros agrestis HOM05D004456 ORTHO05D005287 1.4e-34 149.8 101 73.3
EL10Ac9g22335 Beta vulgaris HOM05D004456 ORTHO05D005287 1.4e-34 149.8 121 67.8
Nitab4.5_0008405g0010 Nicotiana tabacum HOM05D004456 ORTHO05D005287 5.2e-34 147.9 85 88.2
Peaxi162Scf00267g00035 Petunia axillaris HOM05D004456 ORTHO05D005287 8.9e-34 147.1 141 60.3
MCO12G023 Micromonas commoda HOM05D004456 ORTHO05D005287 3.2e-31 138.7 104 66.3
AagrBONN_evm.TU.Sc2ySwM_368.929 Anthoceros agrestis HOM05D004456 ORTHO05D005287 1.3e-29 133.3 103 66.0
PRCOL_00003603 Prasinoderma coloniale HOM05D004456 ORTHO05D005287 1.9e-28 129.4 100 65.0
MD07G1169200 Malus domestica HOM05D004456 ORTHO05D005287 1.9e-23 112.8 106 58.5
Zm00001eb154030 Zea mays HOM05D004456 ORTHO05D005287 4.2e-23 111.7 67 79.1
Cpa.g.sc4.119 Carica papaya HOM05D004456 ORTHO05D005287 2.1e-22 109.4 65 84.6
Cre01.g052350 Chlamydomonas reinhardtii HOM05D004456 ORTHO05D005287 4.6e-22 108.2 100 56.0
Nn1g08913 Nelumbo nucifera HOM05D004456 ORTHO05D005287 6.0e-22 107.8 61 86.9
SHI24418 Sapria himalayana HOM05D004456 ORTHO05D005287 6.6e-21 104.4 64 82.8
QL06p000082 Quercus lobata HOM05D004456 ORTHO05D005287 1.5e-20 103.2 82 64.6
CBR_g49054 Chara braunii HOM05D004456 ORTHO05D005287 1.9e-20 102.8 63 77.8
QL06p000079 Quercus lobata HOM05D004456 ORTHO05D005287 1.9e-20 102.8 63 81.0
SMO244G0037 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 7.3e-20 100.9 95 53.7
SMO281G0018 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 7.3e-20 100.9 95 53.7
SMO198G0083 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 1.6e-19 99.8 116 49.1
Potri.004G095475 Populus trichocarpa HOM05D004456 ORTHO05D005287 3.1e-18 95.5 59 78.0
EL10Ac8g19692 Beta vulgaris HOM05D004456 ORTHO05D005287 4.6e-14 81.6 59 71.2
SHI24419 Sapria himalayana HOM05D004456 ORTHO05D005287 2.3e-13 79.3 53 71.7
Solyc09g055460.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 2.6e-09 65.9 50 62.0
EL10Ac8g19693 Beta vulgaris HOM05D004456 ORTHO05D005287 1.7e-08 63.2 39 79.5
Sed0026344 Sechium edule HOM05D007792 ORTHO05D009931 2.7e-06 55.8 90 34.4
Sed0027103 Sechium edule HOM05D007792 ORTHO05D009931 2.7e-06 55.8 90 34.4


User provided reference genes

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