Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 7.8e-183 643.7 325 100.0
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 4.8e-132 474.9 323 74.6
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.4e-131 472.6 327 72.5
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 3.1e-131 472.2 324 72.8
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 7.0e-131 471.1 325 72.0
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 4.5e-130 468.4 323 71.8
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 5.9e-130 468.0 325 71.7
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 5.9e-130 468.0 325 72.0
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 3.8e-129 465.3 323 72.1
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 3.8e-129 465.3 324 71.6
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 5.0e-129 464.9 323 71.8
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 5.0e-129 464.9 329 71.7
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 5.0e-129 464.9 324 71.6
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 1.9e-128 463.0 323 70.6
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 5.5e-128 461.5 326 71.2
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 7.2e-128 461.1 323 71.5
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 7.2e-128 461.1 323 71.8
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 9.4e-128 460.7 325 71.4
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 2.1e-127 459.5 323 71.2
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 8.0e-127 457.6 323 68.4
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 2.3e-126 456.1 325 71.4
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 2.3e-126 456.1 323 70.0
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 3.0e-126 455.7 323 70.0
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 4.0e-126 455.3 325 71.1
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 8.8e-126 454.1 323 70.6
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 8.8e-126 454.1 324 70.4
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.1e-125 453.8 323 68.4
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.1e-125 453.8 325 70.8
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 1.5e-125 453.4 325 68.3
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 3.3e-125 452.2 323 70.9
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 3.3e-125 452.2 325 70.5
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 9.7e-125 450.7 323 70.0
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 1.3e-124 450.3 325 70.2
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 2.2e-124 449.5 325 68.3
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 2.2e-124 449.5 326 69.9
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 4.8e-124 448.4 325 69.5
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 6.3e-124 448.0 324 71.3
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 6.3e-124 448.0 323 69.7
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 8.2e-124 447.6 327 70.0
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 1.1e-123 447.2 323 70.6
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 1.1e-123 447.2 327 69.4
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 1.4e-123 446.8 329 69.3
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 1.8e-123 446.4 326 69.0
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 1.8e-123 446.4 327 69.1
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 2.4e-123 446.0 325 70.2
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 2.4e-123 446.0 323 69.0
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 2.4e-123 446.0 333 71.5
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 3.1e-123 445.7 329 69.9
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 7.0e-123 444.5 327 68.8
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 1.2e-122 443.7 324 68.2
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 1.2e-122 443.7 326 72.1
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 2.7e-122 442.6 324 69.4
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 3.5e-122 442.2 325 68.9
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 4.5e-122 441.8 329 68.4
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 5.9e-122 441.4 326 68.4
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 5.9e-122 441.4 324 70.4
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 1.0e-121 440.7 327 69.4
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 1.0e-121 440.7 323 68.4
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 2.9e-121 439.1 327 69.1
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 5.0e-121 438.3 328 68.3
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 6.5e-121 438.0 323 66.6
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 6.5e-121 438.0 326 69.6
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 8.5e-121 437.6 325 66.8
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 8.5e-121 437.6 323 69.3
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 1.1e-120 437.2 330 68.5
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 1.1e-120 437.2 330 68.5
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 1.5e-120 436.8 330 68.2
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 1.9e-120 436.4 331 68.9
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.9e-120 436.4 323 69.0
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 2.5e-120 436.0 325 70.5
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 4.2e-120 435.3 328 66.8
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 4.2e-120 435.3 349 65.3
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 5.5e-120 434.9 363 63.6
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 5.5e-120 434.9 328 70.4
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 9.4e-120 434.1 328 68.9
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 9.4e-120 434.1 322 68.3
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 2.1e-119 433.0 326 68.4
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 2.7e-119 432.6 323 68.4
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 2.7e-119 432.6 327 69.4
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 4.7e-119 431.8 323 65.6
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 1.8e-118 429.9 323 67.5
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 1.8e-118 429.9 331 69.8
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.8e-118 429.9 331 69.8
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 2.3e-118 429.5 341 66.0
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 3.0e-118 429.1 316 68.7
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 5.2e-118 428.3 316 68.4
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.2e-117 427.2 331 69.2
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 3.4e-117 425.6 328 67.1
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 7.5e-117 424.5 331 68.9
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 9.8e-117 424.1 332 69.0
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 1.3e-116 423.7 324 66.7
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 2.2e-116 422.9 264 76.9
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 3.7e-116 422.2 333 66.1
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 3.7e-116 422.2 323 66.6
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 6.3e-116 421.4 325 66.5
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 5.4e-115 418.3 325 66.5
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 1.2e-114 417.2 349 63.3
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.6e-114 416.8 325 66.5
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 1.5e-112 410.2 503 48.5
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 5.7e-109 398.3 316 67.4
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 6.3e-108 394.8 336 63.1
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 8.3e-108 394.4 290 67.9
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 8.3e-108 394.4 292 68.5
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 1.7e-105 386.7 263 71.5
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 6.6e-105 384.8 389 54.2
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 7.3e-104 381.3 264 72.3
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 5.2e-102 375.2 325 61.5
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 7.1e-83 311.6 208 75.0
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 9.2e-83 311.2 191 81.2
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 9.2e-83 311.2 182 83.5
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 2.3e-81 306.6 263 56.7
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 3.9e-81 305.8 307 50.8
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 8.1e-79 298.1 167 87.4
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 8.9e-78 294.7 175 81.1
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 2.9e-76 289.7 175 81.1
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 9.6e-72 274.6 167 79.0
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 5.4e-67 258.8 206 62.6
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 7.6e-53 211.8 187 58.3
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 1.9e-51 207.2 152 71.7
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.3e-49 200.3 258 47.3
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.3e-49 200.3 119 83.2
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 8.1e-47 191.8 119 79.8
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 3.1e-46 189.9 137 62.8
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 2.0e-45 187.2 121 75.2
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.4e-43 181.0 113 77.9
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 8.2e-39 165.2 119 72.3
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 1.0e-36 158.3 156 53.2
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.6e-34 151.0 95 81.1
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 1.0e-20 105.1 73 72.6
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 8.2e-15 85.5 158 36.7
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 4.1e-14 83.2 126 42.1
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 6.1e-10 69.3 55 60.0
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 2.0e-08 64.3 144 32.6
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 1.3e-07 61.6 186 25.8
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 8.2e-07 58.9 144 29.9
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.4e-06 58.2 52 61.5
PRCOL_00003044 Prasinoderma coloniale HOM05D024924 ORTHO05D006483 1.8e-06 57.8 141 31.9


User provided reference genes

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