Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 1.4e-254 882.5 448 100.0
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 1.0e-204 716.8 441 81.9
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 5.2e-193 677.9 447 77.2
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 1.5e-192 676.4 408 81.1
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 2.0e-192 676.0 402 81.8
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 5.7e-192 674.5 443 77.4
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 5.7e-192 674.5 453 75.7
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 6.3e-191 671.0 410 81.2
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 1.4e-190 669.8 448 76.3
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 1.4e-190 669.8 408 80.4
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 7.0e-190 667.5 386 83.4
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 2.0e-189 666.0 450 74.7
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 2.7e-189 665.6 386 83.2
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 2.9e-188 662.1 445 75.5
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 2.9e-188 662.1 407 80.6
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 3.8e-188 661.8 386 82.6
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 1.9e-187 659.4 451 75.2
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 4.2e-187 658.3 374 84.8
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 4.2e-187 658.3 407 80.3
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 4.7e-186 654.8 445 74.2
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 1.2e-184 650.2 404 79.5
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 3.4e-184 648.7 401 79.6
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 4.4e-184 648.3 402 79.1
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 5.7e-184 647.9 404 78.5
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 9.8e-184 647.1 402 77.9
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 3.7e-183 645.2 430 76.7
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 1.4e-182 643.3 381 82.7
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 1.8e-182 642.9 453 73.3
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 7.0e-182 641.0 412 76.5
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 3.5e-181 638.6 457 71.6
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 5.9e-181 637.9 392 80.9
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 1.0e-180 637.1 405 77.3
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 1.0e-180 637.1 437 73.2
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 1.0e-180 637.1 408 77.0
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 3.8e-180 635.2 397 78.6
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 4.2e-179 631.7 388 79.6
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 5.5e-179 631.3 435 73.1
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 2.1e-178 629.4 442 72.9
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 2.1e-178 629.4 402 77.1
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 3.6e-178 628.6 443 73.4
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 3.6e-178 628.6 428 73.4
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 1.0e-177 627.1 411 75.9
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 1.4e-177 626.7 443 72.0
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 2.3e-177 625.9 381 79.8
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 4.0e-177 625.2 447 72.3
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 1.2e-176 623.6 460 70.7
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 1.2e-176 623.6 413 74.3
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 1.2e-176 623.6 443 71.3
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 2.6e-176 622.5 443 71.3
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 4.4e-176 621.7 419 74.7
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 7.5e-176 620.9 450 70.9
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 7.5e-176 620.9 447 71.8
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 6.3e-175 617.8 398 76.9
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 8.3e-175 617.5 412 74.0
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 1.1e-174 617.1 397 78.1
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 1.4e-174 616.7 401 77.1
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 4.1e-174 615.1 401 76.8
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 3.5e-173 612.1 438 72.6
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 4.5e-173 611.7 436 71.8
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 1.7e-172 609.8 374 78.9
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 2.3e-172 609.4 434 70.3
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 3.8e-172 608.6 444 69.6
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 5.0e-172 608.2 455 69.9
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 6.6e-172 607.8 430 72.6
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 1.9e-171 606.3 429 71.8
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 1.9e-171 606.3 442 70.8
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 5.6e-171 604.7 455 66.8
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 3.6e-170 602.1 401 75.8
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 6.1e-170 601.3 442 71.0
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 8.0e-170 600.9 447 71.4
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 5.2e-169 598.2 451 68.1
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 5.2e-169 598.2 455 69.7
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 3.4e-168 595.5 453 67.5
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 4.4e-168 595.1 404 73.3
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 7.5e-168 594.3 376 75.3
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 9.8e-168 594.0 447 67.1
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 1.3e-167 593.6 444 68.2
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 4.9e-167 591.7 412 72.1
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 1.9e-166 589.7 450 66.7
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 9.2e-166 587.4 430 68.4
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 9.2e-166 587.4 459 65.6
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 1.2e-165 587.0 442 69.7
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 1.6e-165 586.6 392 73.5
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 1.6e-165 586.6 426 69.0
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 2.0e-165 586.3 394 73.6
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 6.0e-165 584.7 403 71.7
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 8.6e-164 580.9 397 73.0
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 3.3e-163 578.9 452 65.9
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 5.6e-163 578.2 452 65.7
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 5.6e-163 578.2 452 65.7
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 9.5e-163 577.4 430 66.7
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 2.1e-162 576.2 463 65.2
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 2.1e-162 576.2 463 65.2
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 8.0e-162 574.3 422 69.7
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 2.6e-160 569.3 399 72.7
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 7.5e-160 567.8 399 70.4
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 1.1e-150 537.3 458 60.7
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 3.5e-149 532.3 315 81.6
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 4.0e-145 518.8 429 61.3
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 2.6e-144 516.2 387 66.7
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.3e-140 503.8 345 72.5
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 1.7e-140 503.4 464 56.5
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 2.1e-138 496.5 328 77.7
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 2.5e-115 419.9 355 60.8
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 7.9e-109 398.3 257 78.2
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 8.2e-106 388.3 371 52.3
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 6.9e-105 385.2 383 51.4
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 2.2e-103 380.2 363 52.3
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 3.8e-103 379.4 403 47.6
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 8.2e-98 361.7 390 48.7
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 4.7e-93 345.9 370 50.5
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 1.8e-81 307.4 381 47.0
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 3.1e-81 306.6 337 47.2
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 2.9e-79 300.1 344 44.8
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 2.0e-59 234.2 138 78.3
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 1.9e-46 191.0 257 47.9
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 8.9e-44 182.2 104 84.6
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 4.6e-40 169.9 99 76.8
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 1.1e-28 132.1 83 77.1
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 5.2e-28 129.8 83 75.9
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.5e-27 128.3 73 84.9
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 3.4e-27 127.1 283 31.1
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 5.8e-27 126.3 89 70.8
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.7e-26 124.8 260 31.5
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 1.6e-24 118.2 357 30.0
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 2.7e-24 117.5 83 71.1
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 1.5e-22 111.7 98 65.3
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.7e-18 98.2 113 53.1
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 6.0e-16 89.7 73 65.8
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 5.6e-14 83.2 122 42.6
CSS0008802 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.4e-11 73.9 104 45.2
Lsat_1_v5_gn_5_96001 Lactuca sativa HOM05D005548 ORTHO05D029961 6.7e-07 59.7 104 44.2


User provided reference genes

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