Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 0.0e+00 1508.0 742 100.0
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 7.7e-226 787.7 690 59.4
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 8.5e-225 784.3 671 59.5
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 4.7e-223 778.5 671 58.7
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.4e-219 766.9 692 57.5
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 4.5e-218 761.9 677 56.9
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 8.5e-217 757.7 711 55.0
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 9.4e-216 754.2 692 56.1
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 2.1e-215 753.1 698 55.6
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 6.1e-215 751.5 705 54.9
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.4e-214 750.4 671 56.6
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 9.7e-213 744.2 672 56.4
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 2.8e-212 742.7 699 55.8
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 8.2e-212 741.1 675 57.2
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 7.7e-210 734.6 690 56.1
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 7.7e-210 734.6 727 53.1
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.3e-209 733.8 695 54.1
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 8.5e-209 731.1 683 54.8
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.5e-208 730.3 678 55.8
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 3.2e-208 729.2 711 53.4
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 3.2e-208 729.2 680 55.1
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 4.2e-208 728.8 704 54.3
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 5.5e-208 728.4 677 55.7
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 7.2e-208 728.0 682 55.9
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 9.4e-208 727.6 682 56.0
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.2e-207 727.2 708 54.1
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 1.2e-207 727.2 684 54.1
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 4.7e-207 725.3 692 54.3
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 8.0e-207 724.5 677 55.4
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.0e-206 724.2 699 55.1
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 1.0e-206 724.2 692 55.1
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 3.0e-206 722.6 694 54.0
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 6.7e-206 721.5 736 52.0
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 2.0e-205 719.9 669 54.9
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 2.0e-205 719.9 693 52.5
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 9.7e-205 717.6 675 55.4
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 9.7e-205 717.6 696 54.5
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.3e-204 717.2 691 54.8
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 2.2e-204 716.5 693 54.3
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 6.3e-204 714.9 656 55.5
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.4e-203 713.8 722 52.2
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.8e-203 713.4 691 54.4
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 2.4e-203 713.0 653 55.1
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 5.3e-203 711.8 687 54.7
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.2e-202 710.7 697 52.9
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.6e-202 710.3 611 60.6
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.6e-202 710.3 715 53.0
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.7e-202 709.5 671 54.8
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 3.5e-202 709.1 691 53.1
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 4.5e-202 708.8 694 52.9
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 5.9e-202 708.4 697 51.5
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 7.7e-202 708.0 691 53.3
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.5e-201 704.9 709 53.3
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.9e-200 703.4 677 53.3
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 3.2e-200 702.6 671 54.2
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 5.5e-200 701.8 686 54.4
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 9.4e-200 701.0 727 50.9
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.2e-199 700.7 661 53.9
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.6e-199 700.3 735 51.6
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 1.6e-199 700.3 662 53.8
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 2.1e-199 699.9 698 52.1
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.7e-199 699.5 706 52.5
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 8.0e-199 698.0 688 52.3
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.0e-198 697.6 679 53.3
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 4.0e-198 695.7 691 51.8
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.0e-198 695.7 694 52.9
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 5.2e-198 695.3 701 51.6
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.5e-197 693.7 681 52.4
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 9.8e-197 691.0 686 52.2
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 2.4e-195 686.4 661 53.7
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 4.1e-195 685.6 688 51.2
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 5.4e-195 685.3 692 51.7
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 7.0e-195 684.9 703 51.6
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.2e-194 684.1 679 52.3
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.1e-192 677.6 694 51.7
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 7.2e-192 674.9 691 51.5
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 3.6e-191 672.5 674 52.7
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 3.6e-191 672.5 691 51.4
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 5.2e-190 668.7 691 51.4
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.8e-188 662.9 637 53.4
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.7e-186 656.4 666 50.6
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.0e-185 654.4 680 49.7
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.3e-185 654.1 672 50.0
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.9e-185 652.9 697 49.2
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 8.6e-185 651.4 684 50.0
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 2.5e-184 649.8 655 52.8
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 2.5e-184 649.8 670 50.7
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 9.5e-184 647.9 687 49.6
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.6e-183 647.1 667 50.4
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 3.6e-183 646.0 674 49.6
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 6.1e-183 645.2 671 51.0
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.3e-182 643.3 670 50.0
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 3.1e-182 642.9 602 55.3
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 5.2e-182 642.1 684 49.6
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.5e-181 640.6 695 49.5
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 2.0e-181 640.2 670 49.9
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 2.0e-181 640.2 670 49.9
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 5.8e-181 638.6 675 50.1
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 4.9e-180 635.6 671 49.2
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 1.1e-179 634.4 656 52.0
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.4e-179 633.3 676 50.0
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 4.1e-179 632.5 682 49.0
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 4.6e-178 629.0 845 44.0
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.9e-176 623.6 688 48.7
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.4e-174 617.5 691 49.3
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.0e-173 613.6 700 47.1
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 3.4e-173 612.8 661 50.4
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 5.8e-173 612.1 597 54.6
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 4.9e-172 609.0 691 49.5
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 6.4e-172 608.6 663 48.7
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.1e-171 607.8 697 47.3
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 3.2e-171 606.3 700 47.4
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 4.1e-171 605.9 681 47.4
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 5.4e-171 605.5 662 49.5
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.0e-170 602.1 680 48.1
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.7e-169 600.5 665 49.5
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.0e-169 599.7 686 46.6
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 8.6e-169 598.2 626 51.3
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.8e-167 593.2 675 46.4
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 1.8e-166 590.5 745 44.7
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 2.7e-162 576.6 689 47.5
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 6.6e-161 572.0 652 47.2
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 8.1e-159 565.1 681 45.5
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 5.8e-157 558.9 681 47.4
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-156 557.8 586 51.4
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.7e-156 557.4 641 47.4
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 2.4e-155 553.5 542 54.1
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.8e-143 512.7 663 44.3
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 2.4e-142 510.4 665 45.3
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 7.4e-136 488.8 567 48.0
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 5.5e-131 472.6 532 48.3
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 3.3e-128 463.4 301 67.4
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.5e-112 411.4 549 44.6
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 4.8e-103 379.8 424 46.7
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 1.4e-94 351.7 311 55.6
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 7.5e-88 329.3 263 57.4
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.2e-85 322.0 224 71.4
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 3.1e-78 297.4 203 66.0
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 4.2e-75 287.0 258 52.3
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 1.8e-70 271.6 452 38.5
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 3.2e-70 270.8 396 40.2
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 1.0e-65 255.8 557 31.1
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 6.4e-63 246.5 551 34.1
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 6.4e-63 246.5 407 37.8
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.4e-62 245.4 293 45.4
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 8.6e-60 236.1 156 67.9
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 8.9e-57 226.1 586 30.4
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 2.2e-55 221.5 144 68.8
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 6.6e-52 209.9 140 70.0
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.8e-50 204.5 211 49.3
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 5.4e-46 190.3 248 41.5
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 6.2e-42 176.8 119 63.0
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 2.0e-40 171.8 197 46.7
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.4e-38 164.9 111 67.6
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.1e-35 156.0 184 45.7
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-35 155.2 99 69.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-35 155.2 99 69.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-35 155.2 99 69.7
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 7.3e-35 153.3 213 40.4
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 5.8e-32 143.7 382 30.1
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 2.4e-25 121.7 241 34.9
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 1.7e-23 115.5 277 33.9
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 8.4e-23 113.2 247 32.0
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.0e-20 104.8 210 29.5
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 2.1e-18 98.6 235 33.2
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 5.3e-17 94.0 59 71.2
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 5.8e-16 90.5 149 36.2
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.5e-14 84.0 130 36.2
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.5e-13 81.3 72 52.8
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.8e-12 79.0 48 68.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.8e-12 79.0 48 68.8
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 2.8e-10 71.6 55 61.8


User provided reference genes

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