Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR018G0003 Punica granatum HOM05D006260 ORTHO05D007860 9.6e-90 333.6 180 100.0
PGR142G0891 Punica granatum HOM05D006260 ORTHO05D007860 9.6e-90 333.6 180 100.0
PGR142G1877 Punica granatum HOM05D006260 ORTHO05D007860 9.6e-90 333.6 180 100.0
Eucgr.C00083 Eucalyptus grandis HOM05D006260 ORTHO05D007860 4.5e-71 271.6 178 80.9
MELO3C017413.2 Cucumis melo HOM05D006260 ORTHO05D007860 5.5e-69 264.6 180 79.4
CsaV3_1G032030 Cucumis sativus L. HOM05D006260 ORTHO05D007860 7.2e-69 264.2 180 79.4
ClCG06G013810 Citrullus lanatus HOM05D006260 ORTHO05D007860 1.2e-68 263.5 184 77.2
Sed0022699 Sechium edule HOM05D006260 ORTHO05D007860 2.1e-68 262.7 180 77.2
Thecc.09G192000 Theobroma cacao HOM05D006260 ORTHO05D007860 2.1e-68 262.7 180 76.7
Lj5A659T18 Lonicera japonica HOM05D006260 ORTHO05D007860 2.7e-68 262.3 181 77.9
Potri.018G139600 Populus trichocarpa HOM05D006260 ORTHO05D007860 7.9e-68 260.8 182 75.8
CiPaw.08G031300 Carya illinoinensis HOM05D006260 ORTHO05D007860 1.0e-67 260.4 180 76.7
TWI63G0540 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 1.0e-67 260.4 180 76.1
Potri.006G072600 Populus trichocarpa HOM05D006260 ORTHO05D007860 3.0e-67 258.8 181 75.1
FvH4_4g06900 Fragaria vesca HOM05D006260 ORTHO05D007860 3.9e-67 258.5 180 77.2
CANSAT21G0469 Cannabis sativa HOM05D006260 ORTHO05D007860 5.1e-67 258.1 178 75.8
Haze_22050 Corylus avellana HOM05D006260 ORTHO05D007860 5.1e-67 258.1 180 75.0
Atru.chr7.896 Acer truncatum HOM05D006260 ORTHO05D007860 6.7e-67 257.7 180 76.1
MD16G1245000 Malus domestica HOM05D006260 ORTHO05D007860 6.7e-67 257.7 178 79.8
Lj5A660T21 Lonicera japonica HOM05D006260 ORTHO05D007860 8.7e-67 257.3 180 77.2
COL.COLO4_14462 Corchorus olitorius HOM05D006260 ORTHO05D007860 1.1e-66 256.9 181 75.7
Manes.14G161300 Manihot esculenta HOM05D006260 ORTHO05D007860 1.1e-66 256.9 153 85.0
MD16G1244900 Malus domestica HOM05D006260 ORTHO05D007860 1.5e-66 256.5 178 78.7
TWI38G0675 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 1.5e-66 256.5 180 74.4
CANSAT11G1813 Cannabis sativa HOM05D006260 ORTHO05D007860 2.5e-66 255.8 178 75.3
RcHm_v2.0_Chr4g0398801 Rosa chinensis HOM05D006260 ORTHO05D007860 2.5e-66 255.8 180 76.7
Lj5A667T13 Lonicera japonica HOM05D006260 ORTHO05D007860 4.3e-66 255.0 181 77.3
AT4G29870 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 5.7e-66 254.6 180 73.9
Prupe.1G072000 Prunus persica HOM05D006260 ORTHO05D007860 7.4e-66 254.2 184 76.6
Sp7g27680 Schrenkiella parvula HOM05D006260 ORTHO05D007860 7.4e-66 254.2 180 71.7
GSVIVG01029271001 Vitis vinifera HOM05D006260 ORTHO05D007860 7.4e-66 254.2 180 76.7
Ciclev10009690m.g Citrus clementina HOM05D006260 ORTHO05D007860 9.7e-66 253.8 180 74.4
Thhalv10026375m.g Eutrema salsugineum HOM05D006260 ORTHO05D007860 1.6e-65 253.1 180 72.8
FAN22G1136 Fragaria x ananassa HOM05D006260 ORTHO05D007860 1.6e-65 253.1 171 76.6
AL7G22380 Arabidopsis lyrata HOM05D006260 ORTHO05D007860 2.2e-65 252.7 182 73.6
FAN07G2370 Fragaria x ananassa HOM05D006260 ORTHO05D007860 2.2e-65 252.7 175 74.9
Nitab4.5_0000257g0210 Nicotiana tabacum HOM05D006260 ORTHO05D007860 2.8e-65 252.3 180 75.0
Cc05_g06400 Coffea canephora HOM05D006260 ORTHO05D007860 3.7e-65 251.9 180 76.7
FAN12G1915 Fragaria x ananassa HOM05D006260 ORTHO05D007860 3.7e-65 251.9 179 76.0
SGA_v2.0_scaffold31G12783 Striga asiatica HOM05D006260 ORTHO05D007860 3.7e-65 251.9 157 82.8
MSTRG.19359 Avicennia marina HOM05D006260 ORTHO05D007860 4.8e-65 251.5 171 78.9
CARHR237780 Cardamine hirsuta HOM05D006260 ORTHO05D007860 4.8e-65 251.5 180 72.8
Aa31LG2G20680 Aethionema arabicum HOM05D006260 ORTHO05D007860 6.3e-65 251.1 178 73.0
A01p08290 Brassica napus HOM05D006260 ORTHO05D007860 8.2e-65 250.8 180 71.7
BraA01t00777Z Brassica rapa HOM05D006260 ORTHO05D007860 8.2e-65 250.8 180 71.7
Carub.0004s1476 Capsella rubella HOM05D006260 ORTHO05D007860 8.2e-65 250.8 180 73.3
Oeu012389.1 Olea europaea HOM05D006260 ORTHO05D007860 8.2e-65 250.8 180 75.0
Migut.J00776 Erythranthe guttata HOM05D006260 ORTHO05D007860 1.1e-64 250.4 157 81.5
Glyma.15G167900 Glycine max HOM05D006260 ORTHO05D007860 1.4e-64 250.0 170 75.9
vmacro20799 Vaccinium macrocarpon HOM05D006260 ORTHO05D007860 1.4e-64 250.0 180 71.7
Glyma.09G061600 Glycine max HOM05D006260 ORTHO05D007860 1.8e-64 249.6 166 78.3
Carub.0003s3356 Capsella rubella HOM05D006260 ORTHO05D007860 2.4e-64 249.2 182 73.1
Gohir.D04G006400 Gossypium hirsutum HOM05D006260 ORTHO05D007860 2.4e-64 249.2 180 72.8
Gorai.012G007800 Gossypium raimondii HOM05D006260 ORTHO05D007860 2.4e-64 249.2 180 72.8
Nitab4.5_0009368g0010 Nicotiana tabacum HOM05D006260 ORTHO05D007860 2.4e-64 249.2 180 73.9
Rhsim01G0114100 Rhododendron simsii HOM05D006260 ORTHO05D007860 3.1e-64 248.8 180 72.2
Lalb_Chr23g0276701 Lupinus albus HOM05D006260 ORTHO05D007860 4.1e-64 248.4 180 72.2
Phvul.009G234400 Phaseolus vulgaris HOM05D006260 ORTHO05D007860 5.3e-64 248.1 180 73.9
CSS0028862 Camellia sinensis var. sinensis HOM05D006260 ORTHO05D007860 6.9e-64 247.7 180 73.3
Oeu043898.1 Olea europaea HOM05D006260 ORTHO05D007860 9.1e-64 247.3 180 73.9
C01p09330 Brassica napus HOM05D006260 ORTHO05D007860 1.2e-63 246.9 182 72.0
BolC1t00921H Brassica oleracea HOM05D006260 ORTHO05D007860 1.2e-63 246.9 182 72.0
CARHR109790 Cardamine hirsuta HOM05D006260 ORTHO05D007860 1.2e-63 246.9 180 71.7
Gohir.A05G409000 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.2e-63 246.9 180 72.2
Solyc05g006080.1 Solanum lycopersicum HOM05D006260 ORTHO05D007860 1.5e-63 246.5 180 73.3
Sopen05g002100 Solanum pennellii HOM05D006260 ORTHO05D007860 1.5e-63 246.5 180 73.3
unitig_8.g4053 Utricularia gibba HOM05D006260 ORTHO05D007860 1.5e-63 246.5 157 80.9
Gohir.D04G006600 Gossypium hirsutum HOM05D006260 ORTHO05D007860 2.0e-63 246.1 180 72.2
Gorai.012G008000 Gossypium raimondii HOM05D006260 ORTHO05D007860 2.0e-63 246.1 180 72.2
PGSC0003DMG400015598 Solanum tuberosum HOM05D006260 ORTHO05D007860 2.0e-63 246.1 180 72.8
A03p59290 Brassica napus HOM05D006260 ORTHO05D007860 2.6e-63 245.7 180 69.4
SalBow3G0163 Salvia bowleyana HOM05D006260 ORTHO05D007860 2.6e-63 245.7 166 77.1
BraA03t14986Z Brassica rapa HOM05D006260 ORTHO05D007860 3.4e-63 245.4 176 70.5
Gohir.A05G408800 Gossypium hirsutum HOM05D006260 ORTHO05D007860 3.4e-63 245.4 180 72.2
CAN.G1341.6 Capsicum annuum HOM05D006260 ORTHO05D007860 5.9e-63 244.6 180 72.2
Hma1.2p1_0478F.1_g161140 Hydrangea macrophylla HOM05D006260 ORTHO05D007860 5.9e-63 244.6 180 73.3
Lj6g0019941 Lotus japonicus HOM05D006260 ORTHO05D007860 1.7e-62 243.0 180 71.7
SHI03067 Sapria himalayana HOM05D006260 ORTHO05D007860 3.8e-62 241.9 157 79.0
C07p57300 Brassica napus HOM05D006260 ORTHO05D007860 5.0e-62 241.5 180 68.3
BolC7t46199H Brassica oleracea HOM05D006260 ORTHO05D007860 6.5e-62 241.1 180 68.3
MBI14_g10729_MAGBIO Magnolia biondii HOM05D006260 ORTHO05D007860 6.5e-62 241.1 176 71.0
Lsat_1_v5_gn_7_55181 Lactuca sativa HOM05D006260 ORTHO05D007860 1.1e-61 240.4 153 77.8
SGA_v2.0_scaffold112G31634 Striga asiatica HOM05D006260 ORTHO05D007860 1.4e-61 240.0 151 81.5
TPR.G2550 Trifolium pratense HOM05D006260 ORTHO05D007860 1.9e-61 239.6 176 70.5
Ah.14g085330 Amaranthus hybridus HOM05D006260 ORTHO05D007860 2.5e-61 239.2 179 70.9
Medtr2g038390 Medicago truncatula HOM05D006260 ORTHO05D007860 4.2e-61 238.4 167 73.1
Psat1g142480 Pisum sativum HOM05D006260 ORTHO05D007860 5.5e-61 238.0 178 70.2
Ca_02129_v3 Cicer arietinum L. HOM05D006260 ORTHO05D007860 1.6e-60 236.5 151 78.1
Manes.06G017400 Manihot esculenta HOM05D006260 ORTHO05D007860 2.1e-60 236.1 141 83.0
Sc18g0003820 Simmondsia chinensis HOM05D006260 ORTHO05D007860 2.7e-60 235.7 177 71.2
HanXRQChr09g0245351 Helianthus annuus HOM05D006260 ORTHO05D007860 1.0e-59 233.8 153 77.1
Ah.09g228540 Amaranthus hybridus HOM05D006260 ORTHO05D007860 1.4e-59 233.4 180 68.3
CDE07G0891 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 1.4e-59 233.4 152 75.7
DCAR_018008 Daucus carota HOM05D006260 ORTHO05D007860 3.0e-59 232.3 153 77.1
CiPaw.07G199300 Carya illinoinensis HOM05D006260 ORTHO05D007860 8.8e-59 230.7 156 76.3
AUR62027428 Chenopodium quinoa HOM05D006260 ORTHO05D007860 2.0e-58 229.6 147 78.9
AT2G19340 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 2.6e-58 229.2 165 72.1
Peaxi162Scf00421g00071 Petunia axillaris HOM05D006260 ORTHO05D007860 4.4e-58 228.4 165 73.3
TAR383G0359 Trochodendron aralioides HOM05D006260 ORTHO05D007860 7.4e-58 227.6 170 72.4
Aqoxy7G02900 Aquilegia oxysepala HOM05D006260 ORTHO05D007860 1.3e-57 226.9 170 68.8
ATR0580G108 Amborella trichopoda HOM05D006260 ORTHO05D007860 2.2e-57 226.1 180 66.7
FAN17G2269 Fragaria x ananassa HOM05D006260 ORTHO05D007860 1.1e-56 223.8 152 74.3
Zm00001eb169590 Zea mays HOM05D006260 ORTHO05D007860 1.8e-56 223.0 175 65.1
Zm00001eb112720 Zea mays HOM05D006260 ORTHO05D007860 9.1e-56 220.7 166 69.3
HPP92_027392 Vanilla planifolia HOM05D006260 ORTHO05D007860 2.6e-55 219.2 173 63.6
QL02p064675 Quercus lobata HOM05D006260 ORTHO05D007860 1.7e-54 216.5 167 67.1
CDE06G1002 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 1.2e-52 210.3 136 75.0
Sed0019929 Sechium edule HOM05D006260 ORTHO05D007860 1.8e-51 206.5 148 74.3
Mapoly0039s0076 Marchantia polymorpha HOM05D006260 ORTHO05D007860 2.6e-50 202.6 154 67.5
Cpa.g.sc115.60 Carica papaya HOM05D006260 ORTHO05D007860 1.1e-48 197.2 118 85.6
CBR_g37526 Chara braunii HOM05D006260 ORTHO05D007860 1.8e-48 196.4 153 62.7
Sabra06G0054000 Salix brachista HOM05D006260 ORTHO05D007860 1.6e-47 193.4 120 80.8
SMO329G0049 Selaginella moellendorffii HOM05D006260 ORTHO05D007860 2.0e-47 193.0 153 64.7
PSO170G1526 Papaver somniferum HOM05D006260 ORTHO05D007860 4.5e-47 191.8 131 71.8
TAR626G1894 Trochodendron aralioides HOM05D006260 ORTHO05D007860 2.2e-46 189.5 118 82.2
SEGI_37789 Sequoiadendron giganteum HOM05D006260 ORTHO05D007860 3.2e-45 185.7 180 58.3
Sabra18G0114100 Salix brachista HOM05D006260 ORTHO05D007860 8.0e-44 181.0 108 85.2
AUR62031268 Chenopodium quinoa HOM05D006260 ORTHO05D007860 2.6e-42 176.0 107 81.3
Pp3c5_8110 Physcomitrium patens HOM05D006260 ORTHO05D007860 9.7e-42 174.1 131 65.6
AagrBONN_evm.TU.Sc2ySwM_362.1716 Anthoceros agrestis HOM05D006260 ORTHO05D007860 1.7e-41 173.3 154 55.8
ECA240G0773 Erigeron canadensis HOM05D006260 ORTHO05D007860 3.7e-41 172.2 121 73.6
EL10Ac8g19294 Beta vulgaris HOM05D006260 ORTHO05D007860 2.4e-40 169.5 107 78.5
BcaNung00497 Brassica carinata HOM05D006260 ORTHO05D007860 4.5e-39 165.2 129 69.0
Lj5C609T1 Lonicera japonica HOM05D006260 ORTHO05D007860 5.9e-31 138.3 91 75.8
Cre12.g528150 Chlamydomonas reinhardtii HOM05D006260 ORTHO05D007860 3.6e-28 129.0 123 45.5
TWI39G0723 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 4.6e-15 85.5 106 50.0
MD13G1241300 Malus domestica HOM05D006260 ORTHO05D249159 3.7e-09 65.9 118 44.1


User provided reference genes

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