Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 0.0e+00 1191.8 602 100.0
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.1e-195 687.2 501 66.7
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 2.2e-194 682.9 506 65.6
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 4.8e-194 681.8 484 68.6
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 4.1e-193 678.7 484 68.2
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 1.2e-192 677.2 501 66.1
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 3.4e-192 675.6 488 66.4
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 4.5e-192 675.2 485 67.8
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 4.5e-192 675.2 500 66.2
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 7.7e-192 674.5 488 67.4
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 1.0e-191 674.1 577 61.0
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.3e-191 673.7 484 67.6
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 3.8e-191 672.2 503 66.6
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 5.0e-191 671.8 502 65.7
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 5.0e-191 671.8 532 61.3
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 6.5e-191 671.4 502 64.5
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 1.4e-190 670.2 521 63.7
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 1.4e-190 670.2 516 63.8
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 2.5e-190 669.5 502 64.3
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 7.2e-190 667.9 520 62.9
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 7.2e-190 667.9 525 64.0
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 6.1e-189 664.8 528 60.6
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 7.9e-189 664.5 483 66.5
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.4e-188 663.7 550 61.8
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 2.3e-188 662.9 484 66.1
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 2.3e-188 662.9 504 63.9
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 2.3e-188 662.9 502 63.9
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 5.1e-188 661.8 504 63.7
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 2.6e-187 659.4 507 62.5
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.3e-186 657.1 504 63.5
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 1.7e-186 656.8 528 61.7
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 1.7e-186 656.8 484 65.7
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 4.8e-186 655.2 534 59.4
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 4.8e-186 655.2 483 66.5
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 6.3e-186 654.8 505 64.0
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 8.2e-186 654.4 495 64.8
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 8.2e-186 654.4 499 65.5
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.4e-185 652.9 499 65.1
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 3.1e-185 652.5 525 62.7
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 5.3e-185 651.7 495 63.6
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 2.0e-184 649.8 502 64.3
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 4.5e-184 648.7 498 63.7
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 5.9e-184 648.3 502 64.3
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 1.7e-183 646.7 519 62.2
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 8.5e-183 644.4 483 65.2
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 4.2e-182 642.1 525 61.5
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.2e-181 640.6 562 56.6
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 2.7e-181 639.4 470 66.0
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.4e-180 637.1 484 64.9
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 1.4e-180 637.1 502 61.0
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 4.4e-179 632.1 484 61.4
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 5.7e-179 631.7 521 60.3
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 1.7e-178 630.2 492 64.4
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 2.8e-178 629.4 527 59.4
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 1.8e-177 626.7 509 60.5
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 1.8e-177 626.7 518 60.0
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 1.8e-177 626.7 490 62.7
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.5e-176 622.5 530 58.7
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 7.7e-176 621.3 500 61.0
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 7.7e-176 621.3 484 62.8
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 8.5e-175 617.8 507 62.1
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 1.5e-174 617.1 484 61.4
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 1.9e-174 616.7 498 60.8
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.9e-174 616.7 484 63.0
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 3.2e-174 615.9 495 60.2
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 1.6e-173 613.6 500 60.6
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 3.6e-173 612.5 507 60.7
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 3.0e-172 609.4 484 63.0
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 5.2e-172 608.6 522 59.0
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 5.7e-171 605.1 482 61.2
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 9.8e-171 604.4 478 63.6
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 9.8e-171 604.4 484 60.5
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.2e-170 603.2 507 60.9
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 6.3e-170 601.7 483 61.7
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 8.3e-170 601.3 531 58.4
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 3.1e-169 599.4 591 54.3
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 9.1e-169 597.8 519 58.8
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 1.5e-166 590.5 525 57.9
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.0e-165 584.7 484 60.7
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 3.1e-161 572.8 416 66.3
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 3.5e-160 569.3 519 54.5
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 5.9e-160 568.5 488 58.2
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 5.0e-159 565.5 493 56.2
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 9.5e-158 561.2 502 56.0
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 6.1e-157 558.5 487 57.7
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.5e-155 553.9 496 59.1
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 6.4e-154 548.5 501 55.5
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 1.8e-153 547.0 485 57.5
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 1.6e-152 543.9 496 55.0
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.3e-151 540.0 490 55.1
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 4.3e-150 535.8 467 58.0
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-149 534.3 490 54.9
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.1e-149 533.5 494 54.9
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 8.0e-149 531.6 485 55.1
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 3.1e-148 529.6 381 68.5
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 4.4e-147 525.8 502 53.4
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 2.0e-144 516.9 519 52.2
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 1.0e-143 514.6 508 51.4
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 5.6e-142 508.8 496 53.0
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.1e-140 504.6 508 52.8
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.1e-140 504.6 445 55.7
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 4.0e-140 502.7 525 52.2
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 9.8e-139 498.0 352 70.5
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.1e-137 492.7 497 50.1
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 6.0e-136 488.8 502 50.0
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.0e-135 486.5 426 58.7
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 1.9e-134 483.8 490 51.8
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 8.9e-132 474.9 562 47.7
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 2.6e-131 473.4 494 48.0
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 3.2e-129 466.5 523 51.6
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 4.6e-128 462.6 425 55.8
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.1e-126 458.0 483 50.9
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 5.6e-126 455.7 454 53.5
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 1.5e-123 447.6 391 56.5
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 8.7e-119 431.8 338 62.4
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 9.6e-118 428.3 394 54.3
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 2.0e-115 420.6 333 62.2
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 3.8e-114 416.4 324 63.0
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 1.1e-113 414.8 330 62.7
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 5.4e-113 412.5 641 39.3
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.0e-111 408.3 457 48.1
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 5.5e-105 386.0 287 64.1
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 7.9e-104 382.1 391 52.4
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 5.6e-102 375.9 330 58.5
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 9.6e-102 375.2 338 55.3
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 1.4e-100 371.3 456 46.7
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.3e-95 354.8 302 59.3
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.8e-95 354.4 344 53.5
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 9.0e-92 342.0 411 48.4
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.2e-82 310.8 226 64.2
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 3.6e-80 303.5 451 41.0
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.3e-77 295.0 217 62.7
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 2.2e-74 284.3 616 33.6
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 9.4e-73 278.9 276 51.1
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.5e-65 254.2 345 42.3
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 1.0e-63 248.8 548 33.9
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 3.3e-62 243.8 182 64.3
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 1.3e-61 241.9 257 50.2
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 3.7e-61 240.4 168 69.0
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 3.1e-60 237.3 147 72.1
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.3e-60 236.5 198 59.1
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 9.1e-60 235.7 196 59.7
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.2e-59 235.3 180 62.2
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 6.1e-56 223.0 145 70.3
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 6.3e-53 213.0 157 66.9
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 1.4e-52 211.8 145 65.5
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.9e-50 204.1 193 49.7
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 9.8e-46 189.1 146 61.0
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 1.1e-41 175.6 186 50.0
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.5e-41 174.5 133 61.7
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.3e-41 173.7 118 66.9
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.8e-35 152.9 168 44.6
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.6e-34 149.4 145 54.5
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 1.9e-33 148.3 147 51.0
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.7e-32 143.7 197 41.1
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.2e-31 140.2 106 61.3
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 9.9e-22 109.4 76 67.1
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.9e-17 95.1 120 40.8
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 7.6e-14 83.2 66 60.6
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.7e-10 72.0 73 47.9
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 6.6e-10 70.1 54 61.1
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 1.5e-09 68.9 73 49.3


User provided reference genes

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