Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 1.7e-134 482.6 233 100.0
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 5.4e-109 397.9 233 82.8
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 2.5e-106 389.0 234 80.8
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 2.8e-105 385.6 219 80.4
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 2.8e-105 385.6 219 80.4
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 2.3e-104 382.5 233 79.4
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 4.0e-104 381.7 233 77.7
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 4.0e-104 381.7 234 78.2
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 3.4e-103 378.6 234 78.2
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 9.8e-103 377.1 218 78.0
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 9.8e-103 377.1 218 78.0
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 1.7e-102 376.3 234 76.9
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 1.7e-102 376.3 233 79.8
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 2.2e-102 375.9 218 79.8
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 2.2e-102 375.9 233 78.5
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 2.9e-102 375.6 234 78.2
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 3.2e-101 372.1 218 79.8
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 3.2e-101 372.1 218 78.4
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 9.2e-101 370.5 233 77.3
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 1.2e-100 370.2 234 77.8
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 1.6e-100 369.8 256 72.3
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 2.0e-100 369.4 218 78.0
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 2.0e-100 369.4 235 75.3
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 2.0e-100 369.4 218 77.1
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 2.7e-100 369.0 217 81.6
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 2.7e-100 369.0 218 78.0
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 4.6e-100 368.2 250 74.4
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.6e-100 368.2 235 76.2
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 4.6e-100 368.2 218 76.1
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 5.9e-100 367.9 217 81.1
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 5.9e-100 367.9 223 77.1
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 5.9e-100 367.9 235 75.3
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.3e-99 366.7 234 75.2
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.3e-99 366.7 234 75.6
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.3e-99 365.9 236 74.2
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 3.0e-99 365.5 235 74.9
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 5.0e-99 364.8 235 75.3
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 5.0e-99 364.8 218 77.1
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 6.6e-99 364.4 218 77.5
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 6.6e-99 364.4 219 75.3
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 8.6e-99 364.0 218 78.4
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 8.6e-99 364.0 218 75.7
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 1.5e-98 363.2 233 75.1
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.5e-98 363.2 218 76.1
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 1.9e-98 362.8 218 77.5
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.9e-98 362.8 234 74.8
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.5e-98 362.5 235 75.3
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 3.3e-98 362.1 230 75.7
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 7.3e-98 360.9 233 71.7
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 7.3e-98 360.9 218 77.5
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 3.6e-97 358.6 238 74.4
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 3.6e-97 358.6 234 73.5
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 1.0e-96 357.1 218 77.1
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.0e-96 357.1 236 71.2
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 2.3e-96 355.9 233 73.8
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 5.2e-96 354.8 217 78.3
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.2e-95 353.6 250 70.0
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.2e-95 353.6 233 72.1
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 2.0e-95 352.8 213 78.9
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.0e-95 352.8 234 73.1
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.6e-95 352.4 250 70.0
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 1.3e-94 350.1 233 70.0
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.3e-94 350.1 233 70.4
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 2.2e-94 349.4 232 69.8
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 2.9e-94 349.0 232 69.8
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 4.9e-94 348.2 233 69.1
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 6.4e-94 347.8 234 71.8
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 6.4e-94 347.8 218 74.3
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 1.4e-93 346.7 232 69.0
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 3.2e-93 345.5 233 70.0
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 4.1e-93 345.1 222 70.7
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 5.4e-93 344.7 233 72.1
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 7.0e-93 344.4 235 71.9
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 1.2e-92 343.6 233 69.5
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 1.2e-92 343.6 237 73.4
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 1.2e-92 343.6 237 73.4
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.2e-92 343.6 210 77.1
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 1.6e-92 343.2 232 70.3
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 2.7e-92 342.4 233 71.2
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.7e-92 342.4 233 71.2
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 3.5e-92 342.0 221 74.2
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 7.8e-92 340.9 223 71.7
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 1.0e-91 340.5 235 68.9
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.0e-91 340.5 222 72.1
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 1.0e-91 340.5 230 70.9
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.3e-91 340.1 233 67.8
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 1.7e-91 339.7 218 72.5
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 3.0e-91 339.0 230 73.0
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 8.6e-91 337.4 210 76.2
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 8.6e-91 337.4 236 70.3
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 8.6e-91 337.4 236 70.3
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 1.1e-90 337.0 218 72.0
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 1.1e-90 337.0 215 74.9
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 1.5e-90 336.7 218 71.6
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 1.5e-90 336.7 218 71.6
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 2.5e-90 335.9 210 75.7
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 4.3e-90 335.1 218 71.6
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 4.3e-90 335.1 233 69.1
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 7.3e-90 334.3 221 71.0
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 9.5e-90 334.0 222 68.9
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.2e-89 333.6 222 73.9
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.6e-89 333.2 222 68.9
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 4.7e-89 331.6 233 70.0
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.2e-89 331.3 217 75.1
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 2.3e-88 329.3 210 73.8
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 2.3e-88 329.3 234 69.2
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 4.0e-88 328.6 233 68.7
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 4.0e-88 328.6 255 65.1
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 1.5e-87 326.6 220 70.9
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 2.6e-87 325.9 233 68.7
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 5.8e-87 324.7 218 70.6
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 1.7e-86 323.2 237 69.2
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 4.9e-86 321.6 237 69.6
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 8.3e-86 320.9 228 67.5
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.4e-85 320.1 242 64.9
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.6e-84 316.6 233 67.0
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 2.7e-84 315.8 213 69.0
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 6.0e-84 314.7 221 69.2
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 6.6e-83 311.2 220 69.5
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 5.6e-82 308.1 238 65.5
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 9.5e-82 307.4 230 66.1
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 2.9e-78 295.8 217 69.6
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 1.4e-77 293.5 186 75.8
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.7e-75 286.6 180 75.0
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.9e-75 285.4 187 74.9
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 1.1e-74 283.9 233 63.5
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 2.5e-74 282.7 237 62.9
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 3.1e-72 275.8 212 62.3
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 5.8e-71 271.6 211 60.2
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.3e-67 260.4 162 77.2
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.3e-67 260.4 222 60.8
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 2.1e-65 253.1 157 72.6
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 2.6e-63 246.1 159 73.0
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.6e-60 236.9 194 63.4
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 2.5e-58 229.6 175 65.7
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 7.6e-55 218.0 212 52.4
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 9.3e-53 211.1 186 58.6
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 2.7e-52 209.5 211 50.7
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 7.9e-52 208.0 233 47.6
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.1e-50 204.1 233 47.2
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.3e-50 202.6 120 74.2
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 4.3e-50 202.2 146 71.2
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 9.6e-50 201.1 174 58.0
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 6.7e-43 178.3 132 60.6
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 2.6e-39 166.4 209 43.1
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 5.5e-37 158.7 219 44.7
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 7.9e-36 154.8 99 68.7
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 1.3e-33 147.5 152 48.7
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 3.7e-33 146.0 158 51.3
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 2.0e-31 140.2 84 76.2
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 3.2e-29 132.9 212 40.1
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 7.9e-28 128.3 106 63.2
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 4.1e-24 115.9 202 32.2
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 9.1e-24 114.8 85 70.6
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.3e-22 110.9 90 58.9
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.6e-20 104.0 67 74.6
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 5.2e-19 99.0 75 70.7
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.7e-19 98.6 77 67.5
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.0e-18 97.1 75 69.3
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.6e-18 96.7 77 66.2
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 2.2e-17 93.6 124 41.9
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 4.1e-16 89.4 50 82.0
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 7.7e-15 85.1 70 61.4
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.7e-14 84.0 70 62.9
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 5.0e-14 82.4 231 29.4
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 5.7e-10 68.9 140 32.1
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 4.8e-09 65.9 53 69.8
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 1.8e-08 63.9 55 70.9
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 4.1e-08 62.8 38 68.4
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 3.8e-06 56.2 52 57.7
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 5.0e-06 55.8 38 63.2


User provided reference genes

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