Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 6.9e-163 578.2 554 100.0
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 2.5e-43 181.0 223 47.5
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 3.2e-43 180.6 219 46.6
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 5.5e-43 179.9 223 47.5
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 9.3e-43 179.1 222 44.1
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 1.8e-41 174.9 222 42.3
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 3.0e-41 174.1 222 44.6
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 1.5e-40 171.8 220 45.5
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 4.3e-40 170.2 222 42.8
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 7.4e-40 169.5 220 44.1
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 3.7e-39 167.2 213 43.2
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 1.8e-38 164.9 222 41.4
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 9.0e-38 162.5 222 40.5
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 1.7e-36 158.3 222 40.1
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 2.9e-36 157.5 219 40.6
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 5.0e-36 156.8 222 39.6
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 8.4e-36 156.0 222 39.2
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 9.3e-35 152.5 224 39.3
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.2e-34 152.1 179 44.7
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 2.1e-34 151.4 228 40.8
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 7.9e-34 149.4 179 44.1
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 7.9e-34 149.4 207 41.5
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 2.3e-33 147.9 203 41.9
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 1.9e-32 144.8 175 43.4
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 2.5e-32 144.4 213 39.4
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 7.4e-32 142.9 203 42.4
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 7.4e-32 142.9 220 40.5
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 1.6e-31 141.7 206 42.2
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 1.6e-31 141.7 206 42.2
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 1.6e-31 141.7 193 40.9
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 2.2e-31 141.4 206 41.7
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 3.7e-31 140.6 207 42.5
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 6.3e-31 139.8 205 40.5
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 6.3e-31 139.8 203 41.9
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 1.1e-30 139.0 204 40.2
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 1.4e-30 138.7 205 41.5
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 1.8e-30 138.3 182 40.1
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 3.1e-30 137.5 208 41.8
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 4.1e-30 137.1 203 39.9
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 5.3e-30 136.7 179 39.7
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 2.0e-29 134.8 206 40.3
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 3.4e-29 134.0 229 40.6
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 5.9e-29 133.3 207 36.7
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 1.7e-28 131.7 208 38.9
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 1.7e-28 131.7 205 38.5
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 1.7e-28 131.7 214 37.9
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 1.7e-28 131.7 179 40.8
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 2.9e-28 131.0 157 47.8
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 3.8e-28 130.6 215 40.0
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 5.0e-28 130.2 157 47.1
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.1e-27 129.0 209 39.2
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 1.4e-27 128.6 178 38.8
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 1.9e-27 128.3 174 39.1
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 1.9e-27 128.3 175 41.7
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 2.5e-27 127.9 200 37.0
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 2.5e-27 127.9 180 42.2
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 3.2e-27 127.5 180 39.4
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 3.2e-27 127.5 183 38.3
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 4.2e-27 127.1 175 39.4
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 5.5e-27 126.7 204 38.7
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 2.1e-26 124.8 175 39.4
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 3.6e-26 124.0 176 37.5
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 4.6e-26 123.6 189 38.6
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 6.1e-26 123.2 223 35.4
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 6.1e-26 123.2 102 57.8
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 1.8e-25 121.7 195 37.9
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 1.8e-25 121.7 195 37.9
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 1.8e-25 121.7 181 37.6
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 5.1e-25 120.2 216 37.0
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 8.8e-25 119.4 180 40.6
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.5e-24 118.6 180 37.8
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 2.5e-24 117.9 190 38.4
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 3.3e-24 117.5 232 35.3
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 4.3e-24 117.1 131 48.1
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 4.3e-24 117.1 160 43.1
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 5.7e-24 116.7 206 37.4
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 9.7e-24 115.9 156 42.9
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 2.2e-23 114.8 179 33.5
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 3.7e-23 114.0 156 40.4
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 4.8e-23 113.6 198 34.8
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 4.8e-23 113.6 195 35.9
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 6.3e-23 113.2 176 34.1
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 8.2e-23 112.8 166 40.4
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 8.2e-23 112.8 178 32.6
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 5.3e-22 110.2 180 35.6
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 1.5e-21 108.6 183 35.5
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 3.4e-21 107.5 150 43.3
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 4.5e-21 107.1 158 41.8
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 7.7e-21 106.3 152 39.5
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 1.1e-19 102.4 151 39.1
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.9e-19 101.7 182 35.7
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.9e-19 101.7 182 35.7
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 2.5e-19 101.3 155 40.6
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 2.5e-19 101.3 180 36.7
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 2.5e-19 101.3 183 33.3
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 2.5e-19 101.3 182 35.7
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 3.2e-19 100.9 156 41.0
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 3.2e-19 100.9 150 42.7
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 5.5e-19 100.1 175 34.3
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 1.6e-18 98.6 183 35.0
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.6e-18 98.6 196 34.7
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.6e-18 98.6 196 34.7
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 4.7e-18 97.1 142 38.0
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 1.0e-17 95.9 136 39.0
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 3.0e-17 94.4 182 32.4
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 3.0e-17 94.4 182 32.4
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 3.0e-17 94.4 182 32.4
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 6.7e-17 93.2 134 42.5
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 1.5e-16 92.0 183 32.8
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 4.4e-16 90.5 183 32.8
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 7.4e-16 89.7 109 45.9
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 2.2e-15 88.2 95 43.2
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 2.8e-15 87.8 159 34.6
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 1.0e-12 79.3 178 29.2
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 3.6e-10 70.9 131 30.5
Peaxi162Scf01290g00029 Petunia axillaris HOM05D006080 ORTHO05D007382 8.0e-10 69.7 102 41.2
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 1.8e-09 68.6 108 30.6
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 1.8e-09 68.6 131 29.8
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 4.0e-09 67.4 135 31.9
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 5.2e-09 67.0 130 26.9
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 5.2e-09 67.0 124 29.8
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 8.8e-09 66.2 143 31.5
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 8.8e-09 66.2 130 25.4
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 2.0e-08 65.1 135 32.6
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 2.6e-08 64.7 108 28.7
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 1.3e-07 62.4 107 31.8
Eucgr.C00807 Eucalyptus grandis HOM05D006080 ORTHO05D007382 1.7e-07 62.0 50 62.0
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 2.2e-07 61.6 124 26.6
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 2.2e-07 61.6 133 31.6
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 2.2e-07 61.6 113 31.9
TAR629G1749 Trochodendron aralioides HOM05D007157 ORTHO05D009045 6.3e-07 60.1 126 29.4
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 8.2e-07 59.7 134 28.4
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 8.2e-07 59.7 131 28.2
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 1.1e-06 59.3 131 27.5
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 3.1e-06 57.8 131 26.0
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 3.1e-06 57.8 122 27.0
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 5.3e-06 57.0 137 25.5
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 7.0e-06 56.6 146 26.0
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 7.0e-06 56.6 131 26.0
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 7.0e-06 56.6 95 28.4
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 9.1e-06 56.2 130 26.9


User provided reference genes

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