Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 2.6e-197 692.2 442 100.0
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 4.9e-127 458.8 288 76.4
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 7.0e-126 454.9 293 74.7
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 9.2e-126 454.5 288 74.7
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.2e-125 454.1 288 75.3
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 4.5e-125 452.2 287 75.3
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 4.5e-125 452.2 287 75.3
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 5.9e-125 451.8 289 75.8
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 7.8e-125 451.4 287 74.9
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 2.9e-124 449.5 290 73.4
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 2.5e-123 446.4 287 74.6
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.5e-123 446.4 290 74.1
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 4.3e-123 445.7 287 73.9
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 4.3e-123 445.7 287 75.3
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 2.8e-122 443.0 301 71.1
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.8e-122 443.0 287 73.5
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 4.7e-122 442.2 290 72.4
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 1.4e-121 440.7 311 69.1
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 1.8e-121 440.3 270 76.7
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 2.3e-121 439.9 284 73.9
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 3.1e-121 439.5 287 72.8
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 4.0e-121 439.1 283 73.9
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 8.9e-121 438.0 268 76.9
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 8.9e-121 438.0 289 73.0
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.2e-120 437.6 293 72.0
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 2.0e-120 436.8 290 72.4
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 3.4e-120 436.0 268 76.5
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 3.4e-120 436.0 290 72.1
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 7.5e-120 434.9 300 71.0
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 1.3e-119 434.1 287 72.5
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 1.7e-119 433.7 265 76.2
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 1.7e-119 433.7 262 76.7
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 2.2e-119 433.3 291 71.5
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 2.2e-119 433.3 267 76.0
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 2.2e-119 433.3 287 73.5
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 3.7e-119 432.6 258 78.7
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 6.4e-119 431.8 281 72.2
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 6.4e-119 431.8 259 77.6
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 6.4e-119 431.8 290 71.0
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 8.3e-119 431.4 258 78.3
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 1.1e-118 431.0 288 71.9
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 1.1e-118 431.0 254 79.1
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 1.1e-118 431.0 262 77.9
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 1.1e-118 431.0 294 70.7
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 1.9e-118 430.3 292 71.2
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 2.4e-118 429.9 259 77.2
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 2.4e-118 429.9 258 78.3
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 3.2e-118 429.5 258 78.3
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.1e-118 429.1 265 75.5
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 4.1e-118 429.1 292 70.9
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 5.4e-118 428.7 265 76.2
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 7.0e-118 428.3 287 71.1
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 9.2e-118 427.9 309 68.3
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 1.2e-117 427.6 311 67.8
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.6e-117 427.2 258 77.9
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 2.0e-117 426.8 287 71.1
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 2.0e-117 426.8 294 70.4
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 3.5e-117 426.0 287 70.4
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 3.5e-117 426.0 286 71.7
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 3.5e-117 426.0 289 69.2
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 3.5e-117 426.0 264 75.4
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 6.0e-117 425.2 287 71.4
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 1.3e-116 424.1 264 74.2
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 3.9e-116 422.5 288 69.4
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 6.6e-116 421.8 283 71.7
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 1.5e-115 420.6 290 70.3
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 3.3e-115 419.5 264 75.0
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 4.3e-115 419.1 287 70.0
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 5.6e-115 418.7 291 69.8
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 9.5e-115 417.9 287 69.7
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 1.6e-114 417.2 288 70.1
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 1.6e-114 417.2 264 73.9
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 1.6e-114 417.2 287 68.6
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.6e-114 417.2 282 69.9
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 2.1e-114 416.8 284 71.8
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 3.6e-114 416.0 288 68.4
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 3.6e-114 416.0 285 70.5
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 3.6e-114 416.0 297 66.3
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 3.6e-114 416.0 257 76.7
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 6.2e-114 415.2 289 68.5
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 1.1e-113 414.5 254 76.8
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.4e-113 414.1 262 73.7
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.4e-113 414.1 254 76.4
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.8e-113 413.7 290 67.6
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 6.8e-113 411.8 287 69.3
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 2.0e-112 410.2 287 69.3
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 2.6e-112 409.8 264 73.1
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 3.4e-112 409.5 236 79.2
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.3e-111 407.5 291 67.0
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.3e-111 407.5 294 67.3
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 2.2e-111 406.8 289 68.9
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 3.7e-111 406.0 262 74.0
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 3.7e-111 406.0 265 70.2
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 3.7e-111 406.0 259 73.7
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 6.4e-111 405.2 261 73.2
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 1.4e-110 404.1 296 67.6
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 1.4e-110 404.1 255 74.5
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 9.2e-110 401.4 236 78.0
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 9.2e-110 401.4 265 72.5
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 3.0e-108 396.4 259 72.6
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 3.9e-108 396.0 260 72.3
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 5.6e-107 392.1 268 68.3
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 5.6e-107 392.1 262 72.1
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 2.8e-106 389.8 347 57.9
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 3.6e-106 389.4 262 71.8
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 1.3e-103 380.9 284 64.4
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 3.7e-103 379.4 260 68.8
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 4.9e-103 379.0 256 71.5
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 1.6e-101 374.0 280 66.4
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 4.6e-101 372.5 245 73.1
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 1.3e-100 370.9 331 55.9
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 1.7e-100 370.5 298 61.1
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 4.7e-98 362.5 290 62.4
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 5.2e-97 359.0 204 78.4
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 5.8e-96 355.5 214 76.2
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.4e-94 350.1 308 54.5
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 3.9e-92 342.8 308 53.6
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.1e-91 341.3 269 63.2
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 1.9e-91 340.5 308 52.9
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 1.1e-83 314.7 181 80.7
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 9.6e-83 311.6 275 56.7
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.9e-79 300.1 296 53.0
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 7.1e-78 295.4 261 55.9
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 2.7e-77 293.5 178 78.1
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 8.7e-76 288.5 174 77.0
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 8.7e-76 288.5 174 77.0
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.6e-74 284.3 201 70.1
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 3.7e-74 283.1 174 76.4
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 1.4e-73 281.2 187 72.7
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 5.3e-73 279.3 207 68.1
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 9.0e-73 278.5 274 53.3
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 7.6e-72 275.4 174 74.7
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.4e-70 271.2 279 53.0
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 4.8e-66 256.1 301 46.8
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 9.0e-65 251.9 193 64.8
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 5.8e-64 249.2 234 51.7
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 6.3e-58 229.2 191 59.7
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 3.1e-57 226.9 243 47.7
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 2.9e-55 220.3 293 43.7
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 2.9e-55 220.3 185 54.6
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.9e-52 209.9 210 54.8
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.1e-49 200.3 158 64.6
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 3.4e-48 196.8 144 66.0
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 7.7e-48 195.7 144 65.3
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 1.1e-46 191.8 265 39.6
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 7.2e-46 189.1 217 46.5
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 1.2e-45 188.3 230 47.0
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 2.3e-44 184.1 238 43.3
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 1.7e-39 167.9 128 60.2
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 2.2e-39 167.5 124 59.7
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 7.2e-30 136.0 84 70.2
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.1e-25 120.6 81 66.7
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 3.0e-12 77.4 47 70.2
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 3.0e-12 77.4 47 70.2
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 5.2e-12 76.6 54 68.5
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 1.3e-07 62.0 148 29.7
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 4.3e-06 57.0 86 40.7


User provided reference genes

Program Settings