Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 1.1e-162 576.6 311 100.0
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.3e-131 473.4 312 81.4
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 1.1e-128 463.8 311 79.7
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.0e-127 459.5 311 79.7
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.6e-127 459.1 311 79.1
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 5.8e-127 458.0 311 80.4
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 5.8e-127 458.0 310 78.1
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 2.2e-126 456.1 311 78.1
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 3.8e-126 455.3 313 78.9
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 1.1e-125 453.8 311 77.8
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 1.4e-125 453.4 311 77.5
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 3.2e-125 452.2 311 77.2
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 4.2e-125 451.8 311 77.8
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 9.3e-125 450.7 311 77.8
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 1.2e-124 450.3 311 77.5
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 7.9e-124 447.6 311 77.5
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 1.0e-123 447.2 311 77.8
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 1.3e-123 446.8 311 78.1
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 1.8e-123 446.4 311 76.5
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 2.3e-123 446.0 311 75.9
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 3.0e-123 445.7 311 76.8
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 3.9e-123 445.3 311 76.8
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 3.9e-123 445.3 311 76.5
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 5.1e-123 444.9 311 76.8
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 8.7e-123 444.1 318 74.8
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 8.7e-123 444.1 318 74.8
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.9e-122 443.0 319 74.3
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 2.5e-122 442.6 311 74.6
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 3.3e-122 442.2 311 75.9
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 3.3e-122 442.2 311 74.3
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 4.3e-122 441.8 311 75.9
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 5.6e-122 441.4 311 75.6
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 5.6e-122 441.4 311 77.5
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 7.4e-122 441.0 319 74.0
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 9.6e-122 440.7 311 75.9
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 1.6e-121 439.9 319 73.4
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.8e-121 439.1 311 75.2
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.8e-121 439.1 319 74.3
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 3.7e-121 438.7 311 77.2
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 4.8e-121 438.3 311 75.2
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 8.2e-121 437.6 311 75.6
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 3.1e-120 435.6 312 75.0
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 5.3e-120 434.9 316 72.5
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 6.9e-120 434.5 311 74.0
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 1.5e-119 433.3 311 75.2
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 3.4e-119 432.2 319 72.4
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 5.8e-119 431.4 311 74.9
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 5.8e-119 431.4 311 74.9
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 1.0e-118 430.6 311 74.6
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 2.2e-118 429.5 318 73.0
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 3.8e-118 428.7 318 74.2
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 8.4e-118 427.6 311 73.0
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.1e-117 427.2 319 72.7
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.1e-117 427.2 321 72.3
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.4e-117 426.8 311 72.7
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.9e-117 426.4 319 71.8
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 2.5e-117 426.0 319 70.5
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.5e-117 426.0 319 72.7
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.5e-117 426.0 319 72.7
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 3.2e-117 425.6 311 72.0
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.2e-117 425.6 319 72.1
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 5.5e-117 424.9 311 73.3
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 9.3e-117 424.1 319 72.4
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 1.2e-116 423.7 363 66.1
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.1e-116 422.9 310 71.9
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 1.3e-115 420.2 319 70.8
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 2.3e-115 419.5 319 70.8
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 3.9e-115 418.7 319 71.2
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.1e-114 417.2 311 71.7
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 1.5e-114 416.8 311 71.1
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.7e-114 414.8 311 70.7
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 5.7e-114 414.8 318 70.4
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 7.4e-114 414.5 314 72.0
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 7.4e-114 414.5 311 72.3
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 1.3e-113 413.7 318 68.2
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.6e-113 413.3 311 70.4
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 1.6e-113 413.3 311 71.7
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 4.8e-113 411.8 311 71.4
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 2.4e-112 409.5 312 71.5
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 4.1e-112 408.7 312 71.2
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.5e-111 406.8 346 64.5
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 2.0e-111 406.4 308 70.5
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 3.4e-111 405.6 312 71.2
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 7.7e-111 404.4 313 70.0
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 1.7e-110 403.3 312 69.2
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.4e-109 400.2 312 68.9
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 2.5e-109 399.4 312 70.5
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.8e-107 393.3 311 69.5
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 2.3e-107 392.9 286 74.5
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 6.7e-107 391.3 279 75.3
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 8.8e-107 391.0 311 68.8
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 8.8e-107 391.0 311 68.2
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.1e-106 390.6 279 75.3
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.5e-103 380.2 295 70.2
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 1.5e-103 380.2 295 70.2
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 5.9e-103 378.3 298 70.5
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 7.7e-103 377.9 295 69.5
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 4.2e-101 372.1 313 64.9
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 4.2e-101 372.1 321 64.2
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 5.5e-101 371.7 316 64.6
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 9.4e-101 370.9 282 73.0
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.2e-100 370.5 316 64.2
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.1e-100 369.8 319 66.5
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 6.1e-100 368.2 311 68.5
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 1.4e-99 367.1 317 63.7
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 3.0e-99 365.9 263 74.1
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 3.9e-99 365.5 313 65.2
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 5.7e-98 361.7 287 68.6
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 9.7e-98 360.9 263 73.8
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 1.7e-97 360.1 287 68.3
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 1.1e-96 357.5 275 69.1
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 3.8e-94 349.0 311 65.3
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 8.5e-94 347.8 257 72.0
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 5.7e-90 335.1 311 59.5
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 7.4e-90 334.7 263 66.5
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.7e-89 333.6 256 69.9
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 2.4e-88 329.7 313 60.1
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 4.1e-88 328.9 315 59.0
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.0e-87 326.6 311 58.8
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 5.2e-83 312.0 221 73.8
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 9.1e-80 301.2 231 71.4
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 9.1e-80 301.2 311 55.6
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 7.7e-79 298.1 242 66.5
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 1.7e-70 270.4 741 31.8
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 5.0e-70 268.9 319 50.2
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.3e-67 260.0 392 46.2
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 1.0e-62 244.6 309 49.2
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 8.6e-62 241.5 315 45.1
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 4.1e-56 222.6 178 73.6
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 7.8e-55 218.4 289 45.0
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 5.2e-51 205.7 185 64.9
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 3.6e-44 183.0 158 65.8
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 4.0e-43 179.5 121 83.5
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 6.8e-43 178.7 263 47.9
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.6e-42 176.8 153 69.9
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.6e-42 176.8 125 81.6
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.5e-37 161.0 245 43.7
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 5.2e-35 152.5 115 64.3
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 1.5e-34 151.0 144 63.9
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 2.6e-34 150.2 91 83.5
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 1.9e-32 144.1 310 35.2
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 2.4e-32 143.7 261 43.3
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 5.3e-27 125.9 164 55.5
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 6.9e-27 125.6 110 60.9
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 1.4e-24 117.9 93 65.6
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 1.2e-23 114.8 100 63.0
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 2.1e-23 114.0 131 56.5
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 6.6e-22 109.0 89 60.7
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 5.6e-21 105.9 80 78.8
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.9e-16 90.9 58 72.4
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.3e-13 79.7 62 67.7
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 4.8e-12 76.3 397 24.4
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 2.5e-08 63.9 85 49.4
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 3.5e-07 60.1 90 42.2


User provided reference genes

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