Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 3.6e-23 111.3 83 100.0
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 4.4e-13 77.8 87 51.7
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 1.7e-12 75.9 83 51.8
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 2.8e-12 75.1 80 55.0
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 4.8e-12 74.3 80 55.0
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 4.8e-12 74.3 80 55.0
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 4.8e-12 74.3 80 55.0
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 4.8e-12 74.3 80 55.0
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 4.8e-12 74.3 80 55.0
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 4.8e-12 74.3 80 55.0
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 4.8e-12 74.3 80 55.0
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 4.8e-12 74.3 80 55.0
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 6.3e-12 73.9 90 52.2
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 8.3e-12 73.6 90 51.1
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 8.3e-12 73.6 90 47.8
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 1.1e-11 73.2 90 48.9
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 1.1e-11 73.2 90 48.9
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 3.1e-11 71.6 78 51.3
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 2.0e-10 68.9 90 47.8
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 2.7e-10 68.6 90 46.7
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 3.5e-10 68.2 90 46.7
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 7.7e-10 67.0 88 58.0
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 7.7e-10 67.0 88 58.0
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 7.7e-10 67.0 90 45.6
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 1.0e-09 66.6 88 56.8
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.0e-09 66.6 86 46.5
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 1.0e-09 66.6 90 45.6
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.3e-09 66.2 86 46.5
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 1.7e-09 65.9 38 81.6
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 1.7e-09 65.9 90 45.6
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 2.9e-09 65.1 90 45.6
TWI53G0373 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 2.9e-09 65.1 83 73.5
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 3.8e-09 64.7 85 47.1
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 5.0e-09 64.3 85 43.5
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 8.5e-09 63.5 86 44.2
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.1e-08 63.2 86 46.5
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 1.1e-08 63.2 39 74.4
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 1.1e-08 63.2 39 74.4
Cfa014832 Carpinus fangiana HOM05D005842 ORTHO05D007077 1.5e-08 62.8 40 77.5
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 1.9e-08 62.4 89 67.4
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 1.9e-08 62.4 89 67.4
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 1.9e-08 62.4 89 67.4
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 1.9e-08 62.4 89 67.4
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 1.9e-08 62.4 108 55.6
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 2.5e-08 62.0 86 47.7
Duzib151G0923 Durio zibethinus HOM05D005842 ORTHO05D007077 3.2e-08 61.6 90 68.9
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 3.2e-08 61.6 82 42.7
CANSAT78G1061 Cannabis sativa HOM05D005842 ORTHO05D007077 4.2e-08 61.2 40 75.0
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 4.2e-08 61.2 89 42.7
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 5.5e-08 60.8 87 42.5
Thhalv10026478m.g Eutrema salsugineum HOM05D005842 ORTHO05D007077 7.2e-08 60.5 108 52.8
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 9.4e-08 60.1 83 43.4
CANSAT78G1849 Cannabis sativa HOM05D005842 ORTHO05D007077 9.4e-08 60.1 40 72.5
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 9.4e-08 60.1 40 70.0
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 1.2e-07 59.7 81 42.0
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 1.2e-07 59.7 81 42.0
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 1.2e-07 59.7 83 41.0
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 1.2e-07 59.7 82 45.1
arahy.Tifrunner.gnm1.ann1.GMD4I9 Arachis hypogaea HOM05D005842 ORTHO05D007077 2.1e-07 58.9 81 42.0
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 2.1e-07 58.9 108 54.6
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 2.1e-07 58.9 108 54.6
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 2.1e-07 58.9 108 54.6
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 2.1e-07 58.9 108 54.6
Aa31LG9G4090 Aethionema arabicum HOM05D005842 ORTHO05D007077 3.6e-07 58.2 40 70.0
arahy.Tifrunner.gnm1.ann1.JU0LD9 Arachis hypogaea HOM05D005842 ORTHO05D007077 4.7e-07 57.8 81 40.7
CsaV3_2G012270 Cucumis sativus L. HOM05D005842 ORTHO05D007077 4.7e-07 57.8 97 40.2
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 6.1e-07 57.4 41 70.7
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 6.1e-07 57.4 38 68.4
BcaC02g09416 Brassica carinata HOM05D005842 ORTHO05D007077 8.0e-07 57.0 40 67.5
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 8.0e-07 57.0 109 55.0
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 8.0e-07 57.0 109 55.0
BcaC07g37350 Brassica carinata HOM05D005842 ORTHO05D007077 1.4e-06 56.2 108 50.9
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.4e-06 56.2 84 40.5
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 1.4e-06 56.2 35 74.3
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 1.4e-06 56.2 35 74.3
Lalb_Chr19g0128561 Lupinus albus HOM05D005842 ORTHO05D007077 1.8e-06 55.8 40 72.5
BcaB04g17686 Brassica carinata HOM05D005842 ORTHO05D007077 2.3e-06 55.5 108 50.0
Carub.0007s2898 Capsella rubella HOM05D005842 ORTHO05D007077 2.3e-06 55.5 108 55.6
C04p42360 Brassica napus HOM05D005842 ORTHO05D007077 3.0e-06 55.1 41 68.3
Sed0010218 Sechium edule HOM05D005842 ORTHO05D007077 3.0e-06 55.1 82 65.9
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 4.0e-06 54.7 32 78.1
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 4.0e-06 54.7 32 78.1
Medtr1g045950 Medicago truncatula HOM05D005842 ORTHO05D007077 4.0e-06 54.7 35 71.4
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 4.0e-06 54.7 88 60.2
Peaxi162Scf01007g00004 Petunia axillaris HOM05D005842 ORTHO05D007077 4.0e-06 54.7 34 73.5
A08p06740 Brassica napus HOM05D005842 ORTHO05D007077 5.2e-06 54.3 109 51.4
C08p07940 Brassica napus HOM05D005842 ORTHO05D007077 5.2e-06 54.3 41 65.9
BolC8t47646H Brassica oleracea HOM05D005842 ORTHO05D007077 5.2e-06 54.3 109 51.4
BraA08t32692Z Brassica rapa HOM05D005842 ORTHO05D007077 5.2e-06 54.3 109 51.4
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 5.2e-06 54.3 82 63.4
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 6.8e-06 53.9 37 67.6
CARHR219200 Cardamine hirsuta HOM05D005842 ORTHO05D007077 6.8e-06 53.9 108 51.9
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 6.8e-06 53.9 84 45.2
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 6.8e-06 53.9 82 37.8
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 8.8e-06 53.5 84 51.2


User provided reference genes

Program Settings