Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 1.7e-160 569.3 289 100.0
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 4.6e-110 401.7 289 74.0
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 2.5e-108 396.0 287 72.8
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 4.3e-108 395.2 284 71.8
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 3.7e-107 392.1 287 72.1
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.1e-106 390.6 283 71.7
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.8e-106 389.8 285 71.2
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 2.4e-106 389.4 286 67.5
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.5e-105 386.7 285 69.1
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 2.0e-105 386.3 284 67.6
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 3.4e-105 385.6 282 70.6
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 3.8e-104 382.1 285 69.5
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 2.5e-103 379.4 284 69.7
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 4.2e-103 378.6 281 69.0
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 7.1e-103 377.9 285 69.8
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 7.1e-103 377.9 315 64.8
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.3e-103 377.5 283 69.3
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.2e-102 377.1 292 68.5
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 1.6e-102 376.7 234 81.2
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 2.7e-102 375.9 287 69.3
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 3.5e-102 375.6 286 68.5
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.5e-102 375.6 285 69.1
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 4.6e-102 375.2 281 69.8
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 4.6e-102 375.2 289 68.9
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.0e-102 374.8 283 68.6
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 6.0e-102 374.8 237 78.9
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 6.0e-102 374.8 284 69.0
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 7.9e-102 374.4 283 68.2
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 7.9e-102 374.4 284 67.3
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 1.0e-101 374.0 240 76.7
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 1.3e-101 373.6 286 68.9
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.3e-101 373.6 285 67.7
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.8e-101 373.2 241 77.6
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 2.3e-101 372.9 251 74.9
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 2.3e-101 372.9 251 74.5
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 2.3e-101 372.9 281 69.4
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 3.9e-101 372.1 284 69.0
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 5.1e-101 371.7 253 75.9
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 5.1e-101 371.7 240 78.3
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 5.1e-101 371.7 245 76.7
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 8.7e-101 370.9 284 69.0
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 8.7e-101 370.9 285 67.7
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.1e-100 370.5 286 68.2
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.1e-100 370.5 240 75.0
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.1e-100 370.5 290 69.3
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.5e-100 370.2 233 79.0
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 3.3e-100 369.0 284 69.4
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 4.3e-100 368.6 241 75.5
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 4.3e-100 368.6 281 68.7
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 5.6e-100 368.2 281 69.0
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 7.4e-100 367.9 259 73.0
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 7.4e-100 367.9 259 73.4
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.4e-100 367.9 292 66.8
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 9.6e-100 367.5 308 64.9
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.3e-99 367.1 249 74.3
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 1.6e-99 366.7 263 72.6
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 1.6e-99 366.7 274 69.7
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.6e-99 366.7 231 78.8
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.6e-99 366.7 316 63.3
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 2.1e-99 366.3 250 74.4
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 2.1e-99 366.3 250 74.4
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.1e-99 366.3 243 76.1
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 2.8e-99 365.9 247 77.3
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 2.8e-99 365.9 288 66.7
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 3.7e-99 365.5 253 73.9
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 3.7e-99 365.5 287 67.9
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 6.2e-99 364.8 256 73.0
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 6.2e-99 364.8 241 76.8
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 1.4e-98 363.6 255 72.5
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.8e-98 363.2 256 69.9
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 1.8e-98 363.2 292 66.8
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 1.8e-98 363.2 251 74.1
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 4.0e-98 362.1 251 74.1
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 4.0e-98 362.1 260 72.3
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 4.0e-98 362.1 260 72.3
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 4.0e-98 362.1 229 80.3
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 5.3e-98 361.7 259 72.6
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 4.5e-97 358.6 251 72.5
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 4.5e-97 358.6 251 72.5
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 4.5e-97 358.6 251 72.5
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 7.6e-97 357.8 232 75.9
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 2.2e-96 356.3 238 75.2
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 3.8e-96 355.5 229 76.4
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 4.9e-96 355.1 288 67.7
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 1.4e-95 353.6 288 65.3
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.4e-95 353.6 270 68.5
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 1.4e-95 353.6 222 77.0
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 2.5e-95 352.8 262 70.2
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 2.5e-95 352.8 269 69.1
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 4.2e-95 352.1 223 78.9
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 7.1e-95 351.3 286 64.7
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 1.2e-94 350.5 252 71.4
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 1.2e-94 350.5 252 71.8
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 1.6e-94 350.1 229 75.5
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 2.1e-94 349.7 258 69.4
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 7.9e-94 347.8 257 69.6
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.1e-92 344.0 285 63.9
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 5.7e-92 341.7 283 65.0
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 4.8e-91 338.6 246 71.1
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 3.1e-90 335.9 230 73.9
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 9.0e-90 334.3 275 64.4
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 1.2e-89 334.0 246 69.9
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 1.5e-89 333.6 226 71.7
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.6e-89 332.8 265 64.5
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 3.4e-89 332.4 246 70.3
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 4.6e-86 322.0 232 66.8
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 4.3e-84 315.5 200 77.5
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 2.8e-83 312.8 246 65.0
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 4.8e-83 312.0 233 67.0
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.4e-82 310.5 230 68.3
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 4.1e-82 308.9 200 76.5
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 9.1e-82 307.8 199 76.4
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 1.2e-81 307.4 275 59.6
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.3e-80 303.9 245 63.3
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 3.8e-80 302.4 277 59.2
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 6.5e-80 301.6 199 75.4
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.5e-79 299.7 192 77.6
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 3.9e-77 292.4 200 73.5
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 3.9e-77 292.4 229 64.6
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 1.1e-76 290.8 199 73.9
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.7e-75 287.0 238 63.4
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.1e-74 282.7 199 71.9
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 4.1e-74 282.3 229 66.8
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 9.1e-74 281.2 223 65.5
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 1.2e-73 280.8 226 65.5
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 2.0e-73 280.0 199 68.8
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 4.5e-73 278.9 255 59.6
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 5.9e-73 278.5 240 59.2
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 7.7e-73 278.1 235 63.8
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 3.9e-69 265.8 236 58.5
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 2.6e-68 263.1 167 78.4
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.1e-66 257.7 187 70.6
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 2.9e-64 249.6 227 56.4
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 3.8e-64 249.2 238 54.2
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 4.8e-59 232.3 168 71.4
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 8.3e-59 231.5 283 47.0
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 2.6e-52 209.9 167 65.9
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 3.7e-51 206.1 146 69.2
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 6.6e-48 195.3 162 64.2
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 1.5e-47 194.1 146 65.8
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.0e-44 183.7 147 64.6
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.9e-43 179.1 147 63.9
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.5e-39 167.5 137 64.2
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.5e-39 167.5 137 64.2
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.3e-39 166.4 131 65.6
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.8e-38 163.3 158 58.2
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.4e-34 151.0 119 67.2
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 4.7e-30 136.0 124 58.1
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 1.8e-29 134.0 157 49.7
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 7.1e-26 122.1 74 81.1
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 1.2e-25 121.3 74 81.1
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.7e-25 120.2 74 79.7
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.5e-25 119.8 74 79.7
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.7e-24 117.5 74 77.0
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.6e-22 110.9 199 35.7
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 8.1e-22 108.6 71 74.6
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 4.1e-18 96.3 64 71.9
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 7.1e-18 95.5 90 55.6
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.6e-17 92.8 64 73.4
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 1.9e-15 87.4 66 66.7
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 3.3e-15 86.7 63 68.3
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 1.8e-13 80.9 64 65.6
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 5.8e-12 75.9 81 50.6
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 6.4e-11 72.4 46 78.3
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.1e-10 71.6 64 57.8
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 2.4e-10 70.5 44 77.3
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 1.6e-09 67.8 44 72.7
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 4.6e-09 66.2 211 27.5
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 1.0e-08 65.1 62 54.8


User provided reference genes

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