Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 0.0e+00 1414.4 727 100.0
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 4.4e-226 788.5 769 58.0
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 1.5e-221 773.5 753 59.6
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 3.7e-217 758.8 746 58.6
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 8.3e-217 757.7 709 60.1
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 1.1e-216 757.3 748 58.4
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 2.7e-215 752.7 733 58.0
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 3.0e-214 749.2 809 54.3
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.2e-212 743.8 758 57.4
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 6.2e-212 741.5 765 56.3
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 1.1e-211 740.7 776 56.3
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 3.1e-211 739.2 748 57.8
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 6.8e-211 738.0 806 53.7
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 7.1e-208 728.0 748 55.5
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 1.3e-206 723.8 757 55.7
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 6.6e-206 721.5 767 56.1
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 7.3e-205 718.0 756 55.6
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 9.5e-205 717.6 773 55.2
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 1.4e-203 713.8 718 57.0
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.4e-203 713.0 771 54.7
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 1.5e-202 710.3 704 58.2
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 2.0e-202 709.9 722 55.5
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 9.9e-202 707.6 797 54.5
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 1.7e-201 706.8 763 54.4
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 8.4e-201 704.5 754 55.2
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 7.1e-200 701.4 777 52.4
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 2.7e-199 699.5 690 56.8
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 2.3e-198 696.4 771 54.1
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 2.3e-198 696.4 753 54.7
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 1.5e-197 693.7 772 53.9
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 8.1e-196 688.0 710 55.6
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 1.1e-195 687.6 760 53.6
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 3.4e-194 682.6 668 56.9
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 3.8e-193 679.1 734 54.5
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 1.9e-192 676.8 767 53.1
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 4.2e-192 675.6 765 53.6
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 5.4e-192 675.2 605 61.3
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 2.7e-191 672.9 762 53.3
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 7.8e-191 671.4 663 57.9
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 3.9e-190 669.1 748 52.9
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 3.3e-189 666.0 764 53.1
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 9.6e-189 664.5 761 52.4
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 4.0e-187 659.1 759 51.8
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 1.2e-186 657.5 691 55.9
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 1.2e-186 657.5 773 52.5
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 1.5e-186 657.1 749 51.4
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.5e-186 657.1 613 58.2
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 1.5e-186 657.1 706 53.0
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.4e-184 650.6 578 61.2
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 1.9e-184 650.2 740 53.4
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 2.4e-184 649.8 771 52.0
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 7.9e-183 644.8 756 52.0
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 1.0e-182 644.4 767 50.7
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 5.1e-182 642.1 752 52.4
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.5e-181 640.6 725 52.8
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 1.9e-181 640.2 771 51.5
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 2.5e-181 639.8 759 50.5
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 3.3e-181 639.4 757 52.8
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 5.6e-181 638.6 750 52.8
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 1.4e-179 634.0 697 53.2
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 1.5e-178 630.6 770 51.6
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 2.6e-178 629.8 649 55.2
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.3e-177 627.5 749 50.5
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 1.7e-177 627.1 664 54.4
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 2.2e-177 626.7 651 56.7
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 2.2e-177 626.7 744 50.3
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 2.5e-176 623.2 742 50.8
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 4.2e-176 622.5 780 50.4
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 9.3e-176 621.3 709 52.2
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 1.2e-175 620.9 780 50.4
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 6.0e-175 618.6 775 50.7
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 6.0e-175 618.6 812 47.9
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 1.0e-174 617.8 793 49.7
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 1.8e-174 617.1 762 50.1
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 2.3e-174 616.7 759 49.9
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 5.1e-174 615.5 772 49.1
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 8.7e-174 614.8 719 51.0
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 8.7e-174 614.8 756 50.0
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.8e-171 607.1 665 54.0
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 9.0e-171 604.7 774 50.4
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 1.0e-169 601.3 770 50.3
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 1.1e-168 597.8 771 49.2
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 1.9e-168 597.0 668 51.5
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 4.2e-168 595.9 755 49.7
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 7.2e-160 568.5 784 44.6
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 1.0e-158 564.7 777 46.1
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 1.1e-157 561.2 816 46.4
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.3e-156 557.8 481 61.7
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 3.7e-156 556.2 776 45.4
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 1.4e-150 537.7 663 48.0
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 3.6e-143 513.1 700 46.6
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.1e-135 487.3 498 55.0
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 4.7e-135 486.1 428 62.4
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 4.1e-131 473.0 485 55.9
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 8.8e-126 455.3 831 39.1
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 1.2e-125 454.9 616 46.1
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 1.6e-122 444.5 704 45.0
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 2.9e-121 440.3 542 50.2
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 3.5e-114 416.8 679 39.2
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 1.6e-111 407.9 735 38.9
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 4.7e-111 406.4 604 45.9
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 9.8e-101 372.1 822 35.9
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 8.3e-92 342.4 485 44.3
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 9.6e-88 328.9 467 44.5
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 1.4e-75 288.5 798 31.0
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 8.1e-71 272.7 726 30.4
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 6.9e-70 269.6 391 45.8
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 2.7e-58 231.1 425 39.1
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 1.8e-57 228.4 320 43.8
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 8.4e-52 209.5 225 55.1
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 9.4e-43 179.5 258 43.8
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 1.0e-33 149.4 204 43.6
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 2.6e-32 144.8 797 23.1
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 2.8e-31 141.4 144 55.6
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 6.3e-31 140.2 233 45.9
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 1.1e-30 139.4 196 48.5
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 1.1e-30 139.4 628 24.0
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 6.1e-26 123.6 150 47.3
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 3.7e-23 114.4 144 48.6
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 1.3e-20 105.9 104 57.7
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 9.4e-19 99.8 105 56.2
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 1.2e-16 92.8 99 55.6
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 1.6e-13 82.4 77 58.4
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 2.9e-12 78.2 173 28.9
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 2.5e-11 75.1 117 44.4
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 1.2e-10 72.8 91 46.2
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 2.3e-09 68.6 101 44.6
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 2.8e-07 61.6 66 39.4
Solyc02g078320.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 4.9e-07 60.8 87 35.6
Sopen02g023160 Solanum pennellii HOM05D000463 ORTHO05D001294 6.3e-07 60.5 87 34.5
PGSC0003DMG400029719 Solanum tuberosum HOM05D000463 ORTHO05D001294 6.3e-07 60.5 87 34.5
Hma1.2p1_0868F.1_g230520 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 8.3e-07 60.1 152 34.9
VMungo1080G0279 Vigna mungo HOM05D000463 ORTHO05D001294 8.3e-07 60.1 107 31.8
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 1.1e-06 59.7 65 38.5
Peaxi162Scf00736g00046 Petunia axillaris HOM05D000463 ORTHO05D001294 1.8e-06 58.9 104 29.8
BcaC04g23967 Brassica carinata HOM05D000463 ORTHO05D001294 2.4e-06 58.5 69 40.6
C09p02880 Brassica napus HOM05D000463 ORTHO05D001294 2.4e-06 58.5 69 40.6
PSO017G5908 Papaver somniferum HOM05D000515 ORTHO05D005511 2.4e-06 58.5 73 42.5
BolC9t53213H Brassica oleracea HOM05D000463 ORTHO05D001294 3.1e-06 58.2 66 40.9
VMungo0540G1060 Vigna mungo HOM05D000463 ORTHO05D001294 4.1e-06 57.8 74 33.8
ECA236G2819 Erigeron canadensis HOM05D000463 ORTHO05D001294 5.4e-06 57.4 95 31.6
A09p02800 Brassica napus HOM05D000463 ORTHO05D001294 9.2e-06 56.6 69 39.1
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 9.2e-06 56.6 93 32.3


User provided reference genes

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