Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 7.4e-53 210.3 109 100.0
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 5.5e-32 141.0 110 70.0
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 6.1e-31 137.5 110 67.3
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 1.0e-30 136.7 108 70.4
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 1.4e-30 136.3 110 66.4
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 1.8e-30 136.0 105 71.4
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 3.0e-30 135.2 108 68.5
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 4.0e-30 134.8 110 66.4
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 4.0e-30 134.8 110 66.4
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 5.2e-30 134.4 110 65.5
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 5.2e-30 134.4 110 66.4
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 8.8e-30 133.7 113 66.4
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 1.2e-29 133.3 110 66.4
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 1.5e-29 132.9 110 64.5
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 1.5e-29 132.9 115 63.5
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 1.5e-29 132.9 113 67.3
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 2.0e-29 132.5 108 68.5
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 2.0e-29 132.5 108 68.5
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 3.4e-29 131.7 110 64.5
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 3.4e-29 131.7 110 65.5
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 4.4e-29 131.3 110 63.6
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 4.4e-29 131.3 110 64.5
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 4.4e-29 131.3 110 64.5
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 5.7e-29 131.0 110 64.5
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 5.7e-29 131.0 115 63.5
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 7.5e-29 130.6 114 62.3
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 9.8e-29 130.2 110 65.5
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 9.8e-29 130.2 113 63.7
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 1.3e-28 129.8 110 62.7
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 1.7e-28 129.4 108 65.7
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 2.2e-28 129.0 110 62.7
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 2.2e-28 129.0 109 64.2
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 2.2e-28 129.0 110 65.5
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 2.2e-28 129.0 110 65.5
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 2.2e-28 129.0 110 63.6
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 2.2e-28 129.0 115 63.5
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 3.7e-28 128.3 108 64.8
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 4.8e-28 127.9 113 63.7
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 4.8e-28 127.9 115 60.0
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 6.3e-28 127.5 115 60.9
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 8.3e-28 127.1 108 64.8
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 8.3e-28 127.1 110 62.7
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 8.3e-28 127.1 108 65.7
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 1.4e-27 126.3 114 63.2
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 1.4e-27 126.3 109 63.3
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 1.4e-27 126.3 111 65.8
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 1.4e-27 126.3 108 63.9
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 1.8e-27 125.9 110 63.6
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 3.1e-27 125.2 108 63.0
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 3.1e-27 125.2 108 63.0
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 4.1e-27 124.8 115 58.3
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 4.1e-27 124.8 108 65.7
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 4.1e-27 124.8 113 63.7
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 5.4e-27 124.4 107 61.7
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 5.4e-27 124.4 107 61.7
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 1.2e-26 123.2 108 63.9
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 1.2e-26 123.2 105 63.8
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 1.6e-26 122.9 108 63.0
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 1.6e-26 122.9 105 62.9
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 1.6e-26 122.9 107 60.7
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 1.6e-26 122.9 115 61.7
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 1.6e-26 122.9 109 63.3
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 2.0e-26 122.5 111 64.0
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 2.0e-26 122.5 115 59.1
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 2.7e-26 122.1 115 60.0
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 2.7e-26 122.1 114 58.8
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 4.5e-26 121.3 112 59.8
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 4.5e-26 121.3 115 60.9
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 5.9e-26 120.9 115 60.0
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 5.9e-26 120.9 115 60.0
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 1.0e-25 120.2 105 62.9
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 1.0e-25 120.2 105 61.9
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 1.3e-25 119.8 105 62.9
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 1.3e-25 119.8 115 60.0
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 1.3e-25 119.8 115 60.0
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 1.3e-25 119.8 104 61.5
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 1.3e-25 119.8 110 63.6
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 1.7e-25 119.4 105 60.0
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 3.8e-25 118.2 105 60.0
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 3.8e-25 118.2 112 60.7
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 3.8e-25 118.2 110 58.2
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 5.0e-25 117.9 112 60.7
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 5.0e-25 117.9 133 52.6
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 6.5e-25 117.5 105 61.0
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 8.6e-25 117.1 115 59.1
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 8.6e-25 117.1 111 60.4
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 1.1e-24 116.7 110 60.9
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 1.5e-24 116.3 115 56.5
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 1.5e-24 116.3 110 59.1
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 2.5e-24 115.5 110 57.3
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 2.5e-24 115.5 110 56.4
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 2.5e-24 115.5 107 58.9
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 2.5e-24 115.5 107 58.9
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 3.3e-24 115.2 110 57.3
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 4.2e-24 114.8 105 59.0
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 4.2e-24 114.8 105 61.9
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 4.2e-24 114.8 110 56.4
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 5.5e-24 114.4 105 60.0
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 9.5e-24 113.6 107 60.7
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 9.5e-24 113.6 107 58.9
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 1.2e-23 113.2 110 57.3
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 1.2e-23 113.2 110 57.3
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 1.2e-23 113.2 110 57.3
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 1.2e-23 113.2 110 57.3
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 1.2e-23 113.2 110 57.3
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 1.6e-23 112.8 107 61.7
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 1.6e-23 112.8 110 54.5
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 3.6e-23 111.7 105 59.0
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 3.6e-23 111.7 96 63.5
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 4.7e-23 111.3 120 56.7
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 6.1e-23 110.9 107 59.8
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 6.1e-23 110.9 107 59.8
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 6.1e-23 110.9 107 59.8
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 6.1e-23 110.9 107 59.8
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 6.1e-23 110.9 107 59.8
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 8.0e-23 110.5 107 59.8
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 8.0e-23 110.5 107 59.8
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 8.0e-23 110.5 107 57.9
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 1.0e-22 110.2 106 57.5
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 1.0e-22 110.2 105 59.0
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 1.4e-22 109.8 107 59.8
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 4.0e-22 108.2 106 58.5
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 8.9e-22 107.1 96 60.4
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 8.9e-22 107.1 96 60.4
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 2.6e-21 105.5 107 52.3
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 5.7e-21 104.4 107 57.0
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 7.5e-21 104.0 102 59.8
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 2.2e-20 102.4 102 55.9
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 8.3e-20 100.5 105 55.2
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 1.4e-19 99.8 104 54.8
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 3.1e-19 98.6 91 57.1
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 1.6e-18 96.3 96 55.2
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 2.0e-18 95.9 110 53.6
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 1.7e-17 92.8 97 49.5
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 5.0e-17 91.3 112 50.9
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 2.1e-15 85.9 85 60.0
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 3.5e-10 68.6 48 70.8
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 3.0e-09 65.5 102 39.2
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 1.6e-07 59.7 51 62.7
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 2.1e-07 59.3 48 66.7
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 6.2e-07 57.8 50 66.0
FAN19G2796 Fragaria x ananassa HOM05D005425 ORTHO05D046282 1.8e-06 56.2 50 64.0
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 2.3e-06 55.8 103 39.8
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 6.8e-06 54.3 101 35.6


User provided reference genes

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