Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0161 Punica granatum HOM05D003456 ORTHO05D004082 8.2e-45 183.3 92 100.0
CiPaw.13G039000 Carya illinoinensis HOM05D003456 ORTHO05D004082 2.6e-30 135.2 74 87.8
PGR044G1450 Punica granatum HOM05D003456 ORTHO05D004082 5.7e-30 134.0 74 85.1
SGA_v2.0_scaffold62G21335 Striga asiatica HOM05D003456 ORTHO05D004082 9.7e-30 133.3 73 86.3
SGA_v2.0_scaffold85G26612 Striga asiatica HOM05D003456 ORTHO05D004082 9.7e-30 133.3 73 86.3
Potri.010G238800 Populus trichocarpa HOM05D003456 ORTHO05D004082 3.7e-29 131.3 74 85.1
EL10Ac1g00743 Beta vulgaris HOM05D003456 ORTHO05D004082 4.8e-29 131.0 74 83.8
Psat4g110960 Pisum sativum HOM05D003456 ORTHO05D004082 4.8e-29 131.0 74 86.5
PGR031G3484 Punica granatum HOM05D003456 ORTHO05D004082 4.8e-29 131.0 74 83.8
Sc09g0005350 Simmondsia chinensis HOM05D003456 ORTHO05D004082 4.8e-29 131.0 74 83.8
MSTRG.27572 Avicennia marina HOM05D003456 ORTHO05D004082 6.3e-29 130.6 73 83.6
Cpa.g.sc56.14 Carica papaya HOM05D003456 ORTHO05D004082 6.3e-29 130.6 74 82.4
Ciclev10013682m.g Citrus clementina HOM05D003456 ORTHO05D004082 8.2e-29 130.2 75 82.7
Ciclev10017146m.g Citrus clementina HOM05D003456 ORTHO05D004082 8.2e-29 130.2 74 86.5
Sabra08G0013700 Salix brachista HOM05D003456 ORTHO05D004082 8.2e-29 130.2 74 83.8
Aqoxy1G03742 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 1.1e-28 129.8 73 84.9
Cpa.g.sc5.27 Carica papaya HOM05D003456 ORTHO05D004082 1.1e-28 129.8 74 82.4
unitig_0.g1020 Utricularia gibba HOM05D003456 ORTHO05D004082 1.1e-28 129.8 75 86.7
CANSAT56G3878 Cannabis sativa HOM05D003456 ORTHO05D004082 1.4e-28 129.4 74 82.4
ECA233G4183 Erigeron canadensis HOM05D003456 ORTHO05D004082 1.4e-28 129.4 73 83.6
Cc02_g09640 Coffea canephora HOM05D003456 ORTHO05D004082 1.8e-28 129.0 73 82.2
HanXRQChr12g0368091 Helianthus annuus HOM05D003456 ORTHO05D004082 1.8e-28 129.0 73 82.2
Potri.008G020400 Populus trichocarpa HOM05D003456 ORTHO05D004082 1.8e-28 129.0 74 83.8
QL04p044862 Quercus lobata HOM05D003456 ORTHO05D004082 1.8e-28 129.0 73 76.7
Atru.chr12.1024 Acer truncatum HOM05D003456 ORTHO05D004082 2.4e-28 128.6 74 85.1
CANSAT56G1853 Cannabis sativa HOM05D003456 ORTHO05D004082 3.1e-28 128.3 74 81.1
Actinidia34723 Actinidia chinensis HOM05D003456 ORTHO05D004082 4.1e-28 127.9 72 83.3
Cfa016601 Carpinus fangiana HOM05D003456 ORTHO05D004082 4.1e-28 127.9 71 83.1
Haze_19603 Corylus avellana HOM05D003456 ORTHO05D004082 4.1e-28 127.9 71 83.1
Migut.F01607 Erythranthe guttata HOM05D003456 ORTHO05D004082 4.1e-28 127.9 73 80.8
SalBow6G0069 Salvia bowleyana HOM05D003456 ORTHO05D004082 4.1e-28 127.9 75 85.3
Oeu026593.1 Olea europaea HOM05D003456 ORTHO05D004082 5.3e-28 127.5 72 81.9
Sabra10G0187000 Salix brachista HOM05D003456 ORTHO05D004082 5.3e-28 127.5 74 79.7
TAR633G0109 Trochodendron aralioides HOM05D003456 ORTHO05D004082 5.3e-28 127.5 73 83.6
Aqoxy3G02826 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 7.0e-28 127.1 73 83.6
HanXRQChr08g0217241 Helianthus annuus HOM05D003456 ORTHO05D004082 7.0e-28 127.1 72 81.9
TAR636G2922 Trochodendron aralioides HOM05D003456 ORTHO05D004082 7.0e-28 127.1 69 85.5
Atru.chr8.1550 Acer truncatum HOM05D003456 ORTHO05D004082 9.1e-28 126.7 69 85.5
Aqoxy2G01205 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 9.1e-28 126.7 74 82.4
Ca_08885_v3 Cicer arietinum L. HOM05D003456 ORTHO05D004082 9.1e-28 126.7 74 82.4
Duzib128G1248 Durio zibethinus HOM05D003456 ORTHO05D004082 9.1e-28 126.7 76 81.6
Lalb_Chr25g0288351 Lupinus albus HOM05D003456 ORTHO05D004082 9.1e-28 126.7 69 84.1
vmacro10309 Vaccinium macrocarpon HOM05D003456 ORTHO05D004082 9.1e-28 126.7 73 87.7
SalBow6G0063 Salvia bowleyana HOM05D003456 ORTHO05D004082 1.2e-27 126.3 73 82.2
AUR62013762 Chenopodium quinoa HOM05D003456 ORTHO05D004082 1.6e-27 125.9 71 81.7
AUR62023392 Chenopodium quinoa HOM05D003456 ORTHO05D004082 1.6e-27 125.9 71 81.7
Hma1.2p1_0232F.1_g097840 Hydrangea macrophylla HOM05D003456 ORTHO05D004082 1.6e-27 125.9 72 80.6
Manes.09G055901 Manihot esculenta HOM05D003456 ORTHO05D004082 1.6e-27 125.9 73 79.5
Eucgr.J00259 Eucalyptus grandis HOM05D003456 ORTHO05D004082 2.0e-27 125.6 73 80.8
Lalb_Chr20g0111761 Lupinus albus HOM05D003456 ORTHO05D004082 2.0e-27 125.6 69 82.6
Oeu054399.2 Olea europaea HOM05D003456 ORTHO05D004082 2.0e-27 125.6 71 81.7
Dinv21215 Davidia involucrata HOM05D003456 ORTHO05D004082 2.7e-27 125.2 74 78.4
QL07p039199 Quercus lobata HOM05D003456 ORTHO05D004082 2.7e-27 125.2 69 85.5
THA.LOC104804331 Tarenaya hassleriana HOM05D003456 ORTHO05D004082 2.7e-27 125.2 74 79.7
arahy.Tifrunner.gnm1.ann1.C03M9B Arachis hypogaea HOM05D003456 ORTHO05D004082 3.5e-27 124.8 67 86.6
arahy.Tifrunner.gnm1.ann1.VF2KJZ Arachis hypogaea HOM05D003456 ORTHO05D004082 3.5e-27 124.8 67 86.6
FvH4_2g10490 Fragaria vesca HOM05D003456 ORTHO05D004082 4.5e-27 124.4 74 79.7
FvH4_6g18590 Fragaria vesca HOM05D003456 ORTHO05D004082 4.5e-27 124.4 74 79.7
FAN05G2371 Fragaria x ananassa HOM05D003456 ORTHO05D004082 4.5e-27 124.4 74 79.7
FAN14G1410 Fragaria x ananassa HOM05D003456 ORTHO05D004082 4.5e-27 124.4 74 79.7
Lj1g0011692 Lotus japonicus HOM05D003456 ORTHO05D004082 4.5e-27 124.4 70 81.4
TPR.G9901 Trifolium pratense HOM05D003456 ORTHO05D004082 4.5e-27 124.4 68 88.2
arahy.Tifrunner.gnm1.ann1.KEI5RC Arachis hypogaea HOM05D003456 ORTHO05D004082 5.9e-27 124.0 69 82.6
FAN05G5536 Fragaria x ananassa HOM05D003456 ORTHO05D004082 5.9e-27 124.0 74 78.4
FAN09G3852 Fragaria x ananassa HOM05D003456 ORTHO05D004082 5.9e-27 124.0 74 78.4
MD14G1022300 Malus domestica HOM05D003456 ORTHO05D004082 5.9e-27 124.0 70 81.4
RcHm_v2.0_Chr6g0270521 Rosa chinensis HOM05D003456 ORTHO05D004082 5.9e-27 124.0 74 78.4
Sc20g0001150 Simmondsia chinensis HOM05D003456 ORTHO05D004082 5.9e-27 124.0 72 79.2
CSS0039541 Camellia sinensis var. sinensis HOM05D003456 ORTHO05D004082 7.7e-27 123.6 73 83.6
CiPaw.09G013300 Carya illinoinensis HOM05D003456 ORTHO05D004082 7.7e-27 123.6 73 79.5
COL.COLO4_29759 Corchorus olitorius HOM05D003456 ORTHO05D004082 7.7e-27 123.6 76 80.3
Dinv09618 Davidia involucrata HOM05D003456 ORTHO05D004082 7.7e-27 123.6 73 79.5
Rhsim03G0097900 Rhododendron simsii HOM05D003456 ORTHO05D004082 7.7e-27 123.6 73 80.8
Thecc.09G106900 Theobroma cacao HOM05D003456 ORTHO05D004082 7.7e-27 123.6 76 80.3
Glyma.03G195000 Glycine max HOM05D003456 ORTHO05D004082 1.0e-26 123.2 69 81.2
Gohir.D09G011800 Gossypium hirsutum HOM05D003456 ORTHO05D004082 1.0e-26 123.2 74 81.1
Gorai.006G013800 Gossypium raimondii HOM05D003456 ORTHO05D004082 1.0e-26 123.2 74 81.1
RcHm_v2.0_Chr3g0473171 Rosa chinensis HOM05D003456 ORTHO05D004082 1.0e-26 123.2 70 81.4
MELO3C012350.2 Cucumis melo HOM05D003456 ORTHO05D004082 1.3e-26 122.9 70 82.9
FAN24G1424 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.3e-26 122.9 74 78.4
GSVIVG01033834001 Vitis vinifera HOM05D003456 ORTHO05D004082 1.3e-26 122.9 69 82.6
arahy.Tifrunner.gnm1.ann1.P2449T Arachis hypogaea HOM05D003456 ORTHO05D004082 1.7e-26 122.5 69 81.2
ClCG05G018420 Citrullus lanatus HOM05D003456 ORTHO05D004082 1.7e-26 122.5 70 82.9
MD12G1035500 Malus domestica HOM05D003456 ORTHO05D004082 1.7e-26 122.5 70 80.0
Nitab4.5_0011538g0030 Nicotiana tabacum HOM05D003456 ORTHO05D004082 1.7e-26 122.5 72 79.2
Solyc11g006920.2 Solanum lycopersicum HOM05D003456 ORTHO05D004082 1.7e-26 122.5 72 77.8
Sopen11g002830 Solanum pennellii HOM05D003456 ORTHO05D004082 1.7e-26 122.5 72 77.8
PGSC0003DMG400023972 Solanum tuberosum HOM05D003456 ORTHO05D004082 1.7e-26 122.5 72 77.8
ATR0789G023 Amborella trichopoda HOM05D003456 ORTHO05D004082 2.2e-26 122.1 66 86.4
Gohir.A04G063300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 2.2e-26 122.1 74 79.7
Gohir.D04G100300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 2.2e-26 122.1 74 79.7
Gorai.009G403300 Gossypium raimondii HOM05D003456 ORTHO05D004082 2.2e-26 122.1 74 79.7
Lsat_1_v5_gn_8_24141 Lactuca sativa HOM05D003456 ORTHO05D004082 2.2e-26 122.1 69 81.2
Medtr1g060070 Medicago truncatula HOM05D003456 ORTHO05D004082 2.2e-26 122.1 74 78.4
Phvul.001G189600 Phaseolus vulgaris HOM05D003456 ORTHO05D004082 2.2e-26 122.1 69 79.7
Prupe.7G111000 Prunus persica HOM05D003456 ORTHO05D004082 2.2e-26 122.1 70 81.4
BcaB07g31755 Brassica carinata HOM05D003456 ORTHO05D004082 2.9e-26 121.7 72 75.0
BcaC04g23009 Brassica carinata HOM05D003456 ORTHO05D004082 2.9e-26 121.7 75 72.0
A09p11090 Brassica napus HOM05D003456 ORTHO05D004082 2.9e-26 121.7 72 75.0
C09p13080 Brassica napus HOM05D003456 ORTHO05D004082 2.9e-26 121.7 75 72.0
BraA09t36751Z Brassica rapa HOM05D003456 ORTHO05D004082 2.9e-26 121.7 72 75.0
Solyc09g009460.4 Solanum lycopersicum HOM05D003456 ORTHO05D004082 2.9e-26 121.7 69 81.2
Sopen09g004180 Solanum pennellii HOM05D003456 ORTHO05D004082 2.9e-26 121.7 69 81.2
ClCG05G021780 Citrullus lanatus HOM05D003456 ORTHO05D004082 3.8e-26 121.3 70 81.4
CsaV3_5G035380 Cucumis sativus L. HOM05D003456 ORTHO05D004082 3.8e-26 121.3 70 81.4
Glyma.19G194700 Glycine max HOM05D003456 ORTHO05D004082 5.0e-26 120.9 69 79.7
TWI74G0284 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 5.0e-26 120.9 67 82.1
Carub.0001s3604 Capsella rubella HOM05D003456 ORTHO05D004082 6.5e-26 120.6 74 75.7
CAN.G397.10 Capsicum annuum HOM05D003456 ORTHO05D004082 6.5e-26 120.6 64 84.4
TWI53G1385 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 6.5e-26 120.6 67 80.6
BraA03t13724Z Brassica rapa HOM05D003456 ORTHO05D004082 8.5e-26 120.2 82 68.3
BcaB08g34660 Brassica carinata HOM05D003456 ORTHO05D004082 1.1e-25 119.8 71 76.1
BcaC01g02994 Brassica carinata HOM05D003456 ORTHO05D004082 1.1e-25 119.8 70 75.7
A03p45960 Brassica napus HOM05D003456 ORTHO05D004082 1.1e-25 119.8 70 75.7
C03p57360 Brassica napus HOM05D003456 ORTHO05D004082 1.1e-25 119.8 70 75.7
Thhalv10022903m.g Eutrema salsugineum HOM05D003456 ORTHO05D004082 1.1e-25 119.8 71 76.1
Rhsim09G0141900 Rhododendron simsii HOM05D003456 ORTHO05D004082 1.1e-25 119.8 73 82.2
Sp3g30040 Schrenkiella parvula HOM05D003456 ORTHO05D004082 1.5e-25 119.4 71 77.5
Sed0026028 Sechium edule HOM05D003456 ORTHO05D004082 1.5e-25 119.4 70 80.0
Aa31LG8G13940 Aethionema arabicum HOM05D003456 ORTHO05D004082 1.9e-25 119.0 68 77.9
AL3G49380 Arabidopsis lyrata HOM05D003456 ORTHO05D004082 1.9e-25 119.0 67 80.6
AT2G16710 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 1.9e-25 119.0 67 80.6
Migut.F00877 Erythranthe guttata HOM05D003456 ORTHO05D004082 1.9e-25 119.0 82 72.0
PSO151G0153 Papaver somniferum HOM05D003456 ORTHO05D004082 1.9e-25 119.0 69 79.7
Carub.0003s3046 Capsella rubella HOM05D003456 ORTHO05D004082 2.5e-25 118.6 72 75.0
CDE02G3384 Ceratophyllum demersum HOM05D003456 ORTHO05D004082 3.2e-25 118.2 69 78.3
Gohir.A09G013133 Gossypium hirsutum HOM05D003456 ORTHO05D004082 3.2e-25 118.2 71 78.9
Os01g0105800 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 3.2e-25 118.2 64 84.4
BolC3t18012H Brassica oleracea HOM05D003456 ORTHO05D004082 4.2e-25 117.9 69 75.4
PSO170G1366 Papaver somniferum HOM05D003456 ORTHO05D004082 4.2e-25 117.9 69 78.3
CARHR106940 Cardamine hirsuta HOM05D003456 ORTHO05D004082 5.5e-25 117.5 71 74.6
Peaxi162Scf00290g00816 Petunia axillaris HOM05D003456 ORTHO05D004082 5.5e-25 117.5 65 83.1
Os12g0485500 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 9.4e-25 116.7 61 86.9
PSO407G0116 Papaver somniferum HOM05D003456 ORTHO05D004082 9.4e-25 116.7 69 76.8
Zm00001eb126830 Zea mays HOM05D003456 ORTHO05D004082 1.2e-24 116.3 64 82.8
DCAR_020755 Daucus carota HOM05D003456 ORTHO05D004082 2.1e-24 115.5 68 77.9
Zm00001eb334200 Zea mays HOM05D003456 ORTHO05D004082 3.6e-24 114.8 64 79.7
Thecc.05G088300 Theobroma cacao HOM05D003456 ORTHO05D004082 1.8e-23 112.5 67 79.1
SEGI_09582 Sequoiadendron giganteum HOM05D003456 ORTHO05D004082 3.0e-23 111.7 61 82.0
AagrBONN_evm.TU.Sc2ySwM_362.959 Anthoceros agrestis HOM05D003456 ORTHO05D004082 1.2e-22 109.8 60 80.0
Mapoly0089s0049 Marchantia polymorpha HOM05D003456 ORTHO05D004082 2.0e-22 109.0 61 75.4
Pp3c18_19580 Physcomitrium patens HOM05D003456 ORTHO05D004082 2.6e-22 108.6 61 75.4
Nitab4.5_0005483g0040 Nicotiana tabacum HOM05D003456 ORTHO05D004082 5.7e-22 107.5 59 84.7
PGSC0003DMG402002701 Solanum tuberosum HOM05D003456 ORTHO05D004082 5.7e-22 107.5 55 87.3
PSO339G3466 Papaver somniferum HOM05D003456 ORTHO05D004082 7.5e-22 107.1 69 72.5
CBR_g4764 Chara braunii HOM05D003456 ORTHO05D004082 1.3e-21 106.3 59 76.3
FAN02G4247 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.3e-21 106.3 110 53.6
AT2G36260 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 2.8e-21 105.1 67 73.1
RcHm_v2.0_Chr7g0219151 Rosa chinensis HOM05D003456 ORTHO05D004082 1.6e-19 99.4 57 78.9
Gohir.D09G135500 Gossypium hirsutum HOM05D003456 ORTHO05D004082 2.0e-19 99.0 68 72.1
Gorai.006G155500 Gossypium raimondii HOM05D003456 ORTHO05D004082 2.0e-19 99.0 68 72.1
TPR.G4681 Trifolium pratense HOM05D003456 ORTHO05D004082 2.7e-19 98.6 82 63.4
Cc00_g28380 Coffea canephora HOM05D003456 ORTHO05D004082 3.8e-18 94.7 51 86.3
Cc05_g02390 Coffea canephora HOM05D003456 ORTHO05D004082 3.8e-18 94.7 51 86.3
VMungo1383G3423 Vigna mungo HOM05D003456 ORTHO05D004082 5.0e-18 94.4 50 86.0
Nitab4.5_0001437g0010 Nicotiana tabacum HOM05D003456 ORTHO05D004082 6.5e-18 94.0 56 75.0
Oeu024811.2 Olea europaea HOM05D003456 ORTHO05D004082 1.1e-17 93.2 104 51.0
MCO14G517 Micromonas commoda HOM05D003456 ORTHO05D004082 1.5e-17 92.8 61 68.9
Aa31LG5G21390 Aethionema arabicum HOM05D003456 ORTHO05D004082 1.9e-17 92.4 61 63.9
SMO147G0221 Selaginella moellendorffii HOM05D003456 ORTHO05D004082 5.5e-17 90.9 56 67.9
Hund30565 Selenicereus undatus HOM05D003456 ORTHO05D004082 7.5e-14 80.5 51 76.5
PGSC0003DMG400023988 Solanum tuberosum HOM05D003456 ORTHO05D004082 7.5e-14 80.5 49 71.4
Hund30410 Selenicereus undatus HOM05D003456 ORTHO05D004082 1.7e-13 79.3 38 89.5
Psat6g013760 Pisum sativum HOM05D003456 ORTHO05D004082 1.4e-12 76.3 39 92.3
QL07p038879 Quercus lobata HOM05D003456 ORTHO05D004082 1.4e-12 76.3 39 92.3
CAN.G645.14 Capsicum annuum HOM05D000043 ORTHO05D001371 2.4e-12 75.5 39 89.7
C03p57390 Brassica napus HOM05D003456 ORTHO05D004082 5.4e-12 74.3 52 65.4
BolC3t18015H Brassica oleracea HOM05D003456 ORTHO05D004082 5.4e-12 74.3 52 65.4
QL04p047329 Quercus lobata HOM05D003456 ORTHO05D001557 5.4e-12 74.3 51 74.5
Hund22272 Selenicereus undatus HOM05D003456 ORTHO05D004082 7.0e-12 73.9 39 89.7
Nn2g14150 Nelumbo nucifera HOM05D003456 ORTHO05D004082 1.6e-11 72.8 39 87.2
Actinidia31104 Actinidia chinensis HOM05D003456 ORTHO05D004082 3.5e-11 71.6 37 89.2
DCAR_009160 Daucus carota HOM05D003456 ORTHO05D004082 7.8e-11 70.5 39 79.5
Haze_26136 Corylus avellana HOM05D003456 ORTHO05D004082 1.9e-09 65.9 59 50.8
Haze_27704 Corylus avellana HOM05D003456 ORTHO05D004082 2.8e-08 62.0 59 44.1
Cre09.g400775 Chlamydomonas reinhardtii HOM05D003456 ORTHO05D004082 6.1e-08 60.8 38 68.4
CSS0000169 Camellia sinensis var. sinensis HOM05D003456 ORTHO05D004082 3.0e-07 58.5 46 65.2
Nn6g34911 Nelumbo nucifera HOM05D003456 ORTHO05D004082 6.8e-07 57.4 31 87.1
Nitab4.5_0001725g0170 Nicotiana tabacum HOM05D003456 ORTHO05D004082 8.9e-07 57.0 32 78.1
Cfa025191 Carpinus fangiana HOM05D003456 ORTHO05D124956 1.5e-06 56.2 61 45.9
Zm00001eb270460 Zea mays HOM05D002293 ORTHO05D006850 4.4e-06 54.7 63 41.3
Glyma.05G184700 Glycine max HOM05D002293 ORTHO05D006850 7.5e-06 53.9 61 37.7
Glyma.08G142700 Glycine max HOM05D002293 ORTHO05D006850 9.8e-06 53.5 61 37.7
Os06g0146400 Oryza sativa ssp. japonica HOM05D002293 ORTHO05D006850 9.8e-06 53.5 56 42.9
Zm00001eb377130 Zea mays HOM05D002293 ORTHO05D006850 9.8e-06 53.5 73 35.6


User provided reference genes

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