Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0123 Punica granatum HOM05D004456 ORTHO05D005287 1.4e-75 286.2 144 100.0
PGR073G0001 Punica granatum HOM05D004456 ORTHO05D005287 1.0e-62 243.4 125 96.8
PGR073G0004 Punica granatum HOM05D004456 ORTHO05D005287 1.0e-62 243.4 124 97.6
PGR073G0005 Punica granatum HOM05D004456 ORTHO05D005287 1.0e-62 243.4 124 97.6
PGR073G0006 Punica granatum HOM05D004456 ORTHO05D005287 1.2e-61 240.0 124 96.0
PGR142G1158 Punica granatum HOM05D004456 ORTHO05D005287 1.2e-61 240.0 125 95.2
PGR087G0002 Punica granatum HOM05D004456 ORTHO05D005287 3.4e-61 238.4 124 96.0
PGR087G0004 Punica granatum HOM05D004456 ORTHO05D005287 3.4e-61 238.4 124 96.0
PGR142G0749 Punica granatum HOM05D004456 ORTHO05D005287 1.6e-58 229.6 123 92.7
PGR142G2466 Punica granatum HOM05D004456 ORTHO05D005287 2.7e-58 228.8 124 93.5
PGR142G0549 Punica granatum HOM05D004456 ORTHO05D005287 5.9e-58 227.6 124 92.7
PGR142G2683 Punica granatum HOM05D004456 ORTHO05D005287 6.6e-57 224.2 124 91.9
PGR142G0707 Punica granatum HOM05D004456 ORTHO05D005287 1.9e-56 222.6 124 89.5
PGR142G2513 Punica granatum HOM05D004456 ORTHO05D005287 3.3e-56 221.9 124 88.7
PGR142G2293 Punica granatum HOM05D004456 ORTHO05D005287 2.1e-55 219.2 124 87.9
PGR142G2495 Punica granatum HOM05D004456 ORTHO05D005287 3.0e-54 215.3 124 89.5
Eucgr.B03760 Eucalyptus grandis HOM05D004456 ORTHO05D005287 1.5e-53 213.0 122 88.5
Ciclev10029584m.g Citrus clementina HOM05D004456 ORTHO05D005287 9.8e-53 210.3 124 83.9
Sabra17G0098500 Salix brachista HOM05D004456 ORTHO05D005287 2.2e-52 209.1 119 86.6
arahy.Tifrunner.gnm1.ann1.PTU9AS Arachis hypogaea HOM05D004456 ORTHO05D005287 2.9e-52 208.8 119 87.4
arahy.Tifrunner.gnm1.ann1.VAHF8H Arachis hypogaea HOM05D004456 ORTHO05D005287 2.9e-52 208.8 119 87.4
Potri.017G119300 Populus trichocarpa HOM05D004456 ORTHO05D005287 2.9e-52 208.8 119 86.6
PGR142G3851 Punica granatum HOM05D004456 ORTHO05D005287 8.3e-52 207.2 109 93.6
ClCG02G018700 Citrullus lanatus HOM05D004456 ORTHO05D005287 1.1e-51 206.8 116 87.9
MELO3C019631.2 Cucumis melo HOM05D004456 ORTHO05D005287 1.1e-51 206.8 116 87.9
Phvul.009G196700 Phaseolus vulgaris HOM05D004456 ORTHO05D005287 1.1e-51 206.8 118 87.3
Glyma.02G272000 Glycine max HOM05D004456 ORTHO05D005287 1.4e-51 206.5 118 86.4
Medtr0027s0250 Medicago truncatula HOM05D004456 ORTHO05D005287 1.4e-51 206.5 118 86.4
Medtr5g087380 Medicago truncatula HOM05D004456 ORTHO05D005287 1.4e-51 206.5 118 86.4
CsaV3_6G013470 Cucumis sativus L. HOM05D004456 ORTHO05D005287 1.8e-51 206.1 116 87.1
Manes.03G095700 Manihot esculenta HOM05D004456 ORTHO05D005287 1.8e-51 206.1 124 83.1
Lalb_Chr04g0249811 Lupinus albus HOM05D004456 ORTHO05D005287 3.2e-51 205.3 119 85.7
Ca_06131_v3 Cicer arietinum L. HOM05D004456 ORTHO05D005287 5.4e-51 204.5 119 84.9
Sed0012483 Sechium edule HOM05D004456 ORTHO05D005287 5.4e-51 204.5 124 82.3
VMungo1309G1322 Vigna mungo HOM05D004456 ORTHO05D005287 5.4e-51 204.5 118 85.6
Prupe.1G563700 Prunus persica HOM05D004456 ORTHO05D005287 7.0e-51 204.1 124 83.1
Prupe.4G128400 Prunus persica HOM05D004456 ORTHO05D005287 7.0e-51 204.1 124 83.1
Sed0010742 Sechium edule HOM05D004456 ORTHO05D005287 7.0e-51 204.1 116 87.9
Atru.chr8.947 Acer truncatum HOM05D004456 ORTHO05D005287 9.2e-51 203.8 124 80.6
TAR374G0177 Trochodendron aralioides HOM05D004456 ORTHO05D005287 9.2e-51 203.8 124 82.3
CANSAT35G0656 Cannabis sativa HOM05D004456 ORTHO05D005287 1.2e-50 203.4 122 83.6
CANSAT56G2838 Cannabis sativa HOM05D004456 ORTHO05D005287 1.2e-50 203.4 122 83.6
CiPaw.01G092700 Carya illinoinensis HOM05D004456 ORTHO05D005287 1.2e-50 203.4 124 83.1
Haze_16244 Corylus avellana HOM05D004456 ORTHO05D005287 1.2e-50 203.4 124 83.9
Lalb_Chr10g0105771 Lupinus albus HOM05D004456 ORTHO05D005287 1.6e-50 203.0 119 84.9
TAR622G1262 Trochodendron aralioides HOM05D004456 ORTHO05D005287 1.6e-50 203.0 123 82.1
Gohir.D11G338800 Gossypium hirsutum HOM05D004456 ORTHO05D005287 3.5e-50 201.8 124 82.3
Gorai.007G368500 Gossypium raimondii HOM05D004456 ORTHO05D005287 3.5e-50 201.8 124 82.3
LjContig00564g0013918 Lotus japonicus HOM05D004456 ORTHO05D005287 3.5e-50 201.8 119 82.4
TPR.G29918 Trifolium pratense HOM05D004456 ORTHO05D005287 4.6e-50 201.4 118 84.7
Thecc.06G049600 Theobroma cacao HOM05D004456 ORTHO05D005287 6.0e-50 201.1 124 80.6
COL.COLO4_26811 Corchorus olitorius HOM05D004456 ORTHO05D005287 1.3e-49 199.9 124 81.5
Dinv05126 Davidia involucrata HOM05D004456 ORTHO05D005287 2.3e-49 199.1 124 80.6
Duzib235G0097 Durio zibethinus HOM05D004456 ORTHO05D005287 2.3e-49 199.1 124 79.8
Aqoxy3G00192 Aquilegia oxysepala HOM05D004456 ORTHO05D005287 3.0e-49 198.7 124 80.6
Gohir.A11G319600 Gossypium hirsutum HOM05D004456 ORTHO05D005287 5.0e-49 198.0 124 79.8
Solyc02g069840.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 5.0e-49 198.0 132 75.0
THA.LOC104812342 Tarenaya hassleriana HOM05D004456 ORTHO05D005287 6.6e-49 197.6 119 81.5
HanXRQChr03g0087831 Helianthus annuus HOM05D004456 ORTHO05D005287 8.6e-49 197.2 124 79.8
MD10G1216300 Malus domestica HOM05D004456 ORTHO05D005287 8.6e-49 197.2 122 82.0
Sopen02g019000 Solanum pennellii HOM05D004456 ORTHO05D005287 8.6e-49 197.2 121 81.0
Aa31LG7G1200 Aethionema arabicum HOM05D004456 ORTHO05D005287 1.1e-48 196.8 119 80.7
PGSC0003DMG400021190 Solanum tuberosum HOM05D004456 ORTHO05D005287 1.1e-48 196.8 121 80.2
ECA246G0212 Erigeron canadensis HOM05D004456 ORTHO05D005287 1.5e-48 196.4 124 79.8
BcaC07g38811 Brassica carinata HOM05D004456 ORTHO05D005287 3.3e-48 195.3 119 79.8
A08p31300 Brassica napus HOM05D004456 ORTHO05D005287 3.3e-48 195.3 119 79.8
C08p17530 Brassica napus HOM05D004456 ORTHO05D005287 3.3e-48 195.3 119 79.8
BolC8t49379H Brassica oleracea HOM05D004456 ORTHO05D005287 3.3e-48 195.3 119 79.8
Oeu041103.1 Olea europaea HOM05D004456 ORTHO05D005287 3.3e-48 195.3 124 81.5
DCAR_003856 Daucus carota HOM05D004456 ORTHO05D005287 4.3e-48 194.9 124 79.0
A06p12700 Brassica napus HOM05D004456 ORTHO05D005287 5.6e-48 194.5 119 79.8
C05p15000 Brassica napus HOM05D004456 ORTHO05D005287 5.6e-48 194.5 119 79.8
BolC5t30215H Brassica oleracea HOM05D004456 ORTHO05D005287 5.6e-48 194.5 119 79.8
BraA06t24430Z Brassica rapa HOM05D004456 ORTHO05D005287 5.6e-48 194.5 119 79.8
HanXRQChr17g0543051 Helianthus annuus HOM05D004456 ORTHO05D005287 7.3e-48 194.1 121 79.3
Oeu015180.1 Olea europaea HOM05D004456 ORTHO05D005287 7.3e-48 194.1 124 81.5
TWI81G0537 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 7.3e-48 194.1 116 82.8
Psat2g023600 Pisum sativum HOM05D004456 ORTHO05D005287 9.5e-48 193.7 118 83.1
Thhalv10009114m.g Eutrema salsugineum HOM05D004456 ORTHO05D005287 1.2e-47 193.4 119 79.8
Nitab4.5_0004615g0060 Nicotiana tabacum HOM05D004456 ORTHO05D005287 1.2e-47 193.4 121 79.3
Sp1g14890 Schrenkiella parvula HOM05D004456 ORTHO05D005287 1.2e-47 193.4 119 79.8
CSS0000388 Camellia sinensis var. sinensis HOM05D004456 ORTHO05D005287 1.6e-47 193.0 116 84.5
Nitab4.5_0001225g0030 Nicotiana tabacum HOM05D004456 ORTHO05D005287 1.6e-47 193.0 121 79.3
GSVIVG01015827001 Vitis vinifera HOM05D004456 ORTHO05D005287 1.6e-47 193.0 121 79.3
BcaB03g13034 Brassica carinata HOM05D004456 ORTHO05D005287 2.1e-47 192.6 119 79.8
BraA08t35053Z Brassica rapa HOM05D004456 ORTHO05D005287 2.1e-47 192.6 119 79.0
Hma1.2p1_0333F.1_g128240 Hydrangea macrophylla HOM05D004456 ORTHO05D005287 2.1e-47 192.6 124 78.2
Zm00001eb353650 Zea mays HOM05D004456 ORTHO05D005287 2.1e-47 192.6 108 88.0
Actinidia13485 Actinidia chinensis HOM05D004456 ORTHO05D005287 2.8e-47 192.2 113 84.1
BcaB02g06679 Brassica carinata HOM05D004456 ORTHO05D005287 3.6e-47 191.8 117 80.3
CDE04G1757 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 3.6e-47 191.8 111 85.6
CDE08G1311 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 3.6e-47 191.8 111 85.6
FAN25G2185 Fragaria x ananassa HOM05D004456 ORTHO05D005287 4.7e-47 191.4 121 79.3
ATR0618G343 Amborella trichopoda HOM05D004456 ORTHO05D005287 6.2e-47 191.0 119 81.5
CARHR017200 Cardamine hirsuta HOM05D004456 ORTHO05D005287 8.0e-47 190.7 119 79.0
FvH4_3g14110 Fragaria vesca HOM05D004456 ORTHO05D005287 8.0e-47 190.7 121 78.5
FAN11G1980 Fragaria x ananassa HOM05D004456 ORTHO05D005287 8.0e-47 190.7 121 78.5
FAN16G3308 Fragaria x ananassa HOM05D004456 ORTHO05D005287 8.0e-47 190.7 121 78.5
Lsat_1_v5_gn_4_69821 Lactuca sativa HOM05D004456 ORTHO05D005287 8.0e-47 190.7 124 76.6
RcHm_v2.0_Chr5g0023421 Rosa chinensis HOM05D004456 ORTHO05D005287 8.0e-47 190.7 124 78.2
TWI60G0757 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 8.0e-47 190.7 126 77.8
AT1G16740 Arabidopsis thaliana HOM05D004456 ORTHO05D005287 1.1e-46 190.3 119 79.0
MSTRG.14797 Avicennia marina HOM05D004456 ORTHO05D005287 1.1e-46 190.3 113 84.1
Carub.0001s1648 Capsella rubella HOM05D004456 ORTHO05D005287 1.1e-46 190.3 119 79.0
CAN.G79.42 Capsicum annuum HOM05D004456 ORTHO05D005287 1.1e-46 190.3 122 78.7
Os05g0528200 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 1.1e-46 190.3 108 87.0
Hund17691 Selenicereus undatus HOM05D004456 ORTHO05D005287 1.1e-46 190.3 119 80.7
Cc09_g08010 Coffea canephora HOM05D004456 ORTHO05D005287 1.4e-46 189.9 121 81.0
SGA_v2.0_scaffold223G42863 Striga asiatica HOM05D004456 ORTHO05D005287 1.4e-46 189.9 113 84.1
Os01g0734100 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 1.8e-46 189.5 114 83.3
SalBow7G3040 Salvia bowleyana HOM05D004456 ORTHO05D005287 1.8e-46 189.5 113 84.1
HPP92_025894 Vanilla planifolia HOM05D004456 ORTHO05D005287 1.8e-46 189.5 121 80.2
AL1G28910 Arabidopsis lyrata HOM05D004456 ORTHO05D005287 2.3e-46 189.1 119 78.2
MBI03_g42617_MAGBIO Magnolia biondii HOM05D004456 ORTHO05D005287 2.3e-46 189.1 136 74.3
Rhsim05G0148000 Rhododendron simsii HOM05D004456 ORTHO05D005287 4.0e-46 188.3 121 79.3
Ah.06g192000 Amaranthus hybridus HOM05D004456 ORTHO05D005287 5.2e-46 188.0 121 80.2
Migut.M01926 Erythranthe guttata HOM05D004456 ORTHO05D005287 5.2e-46 188.0 124 79.0
FAN21G1444 Fragaria x ananassa HOM05D004456 ORTHO05D005287 5.2e-46 188.0 121 77.7
Lsat_1_v5_gn_1_42081 Lactuca sativa HOM05D004456 ORTHO05D005287 5.2e-46 188.0 125 74.4
vmacro03444 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 6.8e-46 187.6 118 78.8
PSO384G3508 Papaver somniferum HOM05D004456 ORTHO05D005287 1.2e-45 186.8 116 78.4
Migut.M01892 Erythranthe guttata HOM05D004456 ORTHO05D005287 1.5e-45 186.4 124 78.2
EL10Ac1g00574 Beta vulgaris HOM05D004456 ORTHO05D005287 2.0e-45 186.0 121 80.2
PSO339G5129 Papaver somniferum HOM05D004456 ORTHO05D005287 2.0e-45 186.0 116 78.4
vmacro03391 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 2.0e-45 186.0 121 77.7
unitig_37.g12076 Utricularia gibba HOM05D004456 ORTHO05D005287 2.6e-45 185.7 113 82.3
unitig_92.g28171 Utricularia gibba HOM05D004456 ORTHO05D005287 2.6e-45 185.7 113 81.4
Sc17g0004630 Simmondsia chinensis HOM05D004456 ORTHO05D005287 3.4e-45 185.3 121 79.3
AUR62005032 Chenopodium quinoa HOM05D004456 ORTHO05D005287 6.4e-44 181.0 119 78.2
EL10Ac4g09241 Beta vulgaris HOM05D004456 ORTHO05D005287 1.4e-43 179.9 115 79.1
AUR62000936 Chenopodium quinoa HOM05D004456 ORTHO05D005287 7.0e-43 177.6 119 77.3
Nn7g36646 Nelumbo nucifera HOM05D004456 ORTHO05D005287 6.0e-42 174.5 121 75.2
Mapoly0002s0127 Marchantia polymorpha HOM05D004456 ORTHO05D005287 2.1e-39 166.0 102 78.4
Pp3c20_1830 Physcomitrium patens HOM05D004456 ORTHO05D005287 3.6e-39 165.2 103 79.6
SMO358G0062 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 7.1e-35 151.0 113 65.5
AagrBONN_evm.TU.Sc2ySwM_228.5758 Anthoceros agrestis HOM05D004456 ORTHO05D005287 3.5e-34 148.7 103 70.9
EL10Ac9g22335 Beta vulgaris HOM05D004456 ORTHO05D005287 3.5e-34 148.7 126 65.9
Nitab4.5_0008405g0010 Nicotiana tabacum HOM05D004456 ORTHO05D005287 1.0e-33 147.1 85 87.1
Peaxi162Scf00267g00035 Petunia axillaris HOM05D004456 ORTHO05D005287 1.1e-32 143.7 139 59.7
MCO12G023 Micromonas commoda HOM05D004456 ORTHO05D005287 6.2e-31 137.9 97 70.1
AagrBONN_evm.TU.Sc2ySwM_368.929 Anthoceros agrestis HOM05D004456 ORTHO05D005287 1.2e-29 133.7 103 66.0
PRCOL_00003603 Prasinoderma coloniale HOM05D004456 ORTHO05D005287 3.8e-28 128.6 98 64.3
MD07G1169200 Malus domestica HOM05D004456 ORTHO05D005287 1.2e-23 113.6 106 59.4
Zm00001eb154030 Zea mays HOM05D004456 ORTHO05D005287 2.8e-23 112.5 67 79.1
Cre01.g052350 Chlamydomonas reinhardtii HOM05D004456 ORTHO05D005287 1.8e-22 109.8 102 55.9
Nn1g08913 Nelumbo nucifera HOM05D004456 ORTHO05D005287 1.5e-21 106.7 59 86.4
Cpa.g.sc4.119 Carica papaya HOM05D004456 ORTHO05D005287 3.4e-21 105.5 63 82.5
QL06p000082 Quercus lobata HOM05D004456 ORTHO05D005287 3.4e-21 105.5 82 67.1
QL06p000079 Quercus lobata HOM05D004456 ORTHO05D005287 3.8e-20 102.1 61 80.3
CBR_g49054 Chara braunii HOM05D004456 ORTHO05D005287 4.9e-20 101.7 61 77.0
SHI24418 Sapria himalayana HOM05D004456 ORTHO05D005287 6.4e-20 101.3 67 77.6
SMO244G0037 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 6.4e-20 101.3 95 53.7
SMO281G0018 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 6.4e-20 101.3 95 53.7
SMO198G0083 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 8.4e-20 100.9 116 47.4
Potri.004G095475 Populus trichocarpa HOM05D004456 ORTHO05D005287 1.2e-18 97.1 59 79.7
EL10Ac8g19692 Beta vulgaris HOM05D004456 ORTHO05D005287 8.1e-15 84.3 48 85.4
SHI24419 Sapria himalayana HOM05D004456 ORTHO05D005287 4.5e-13 78.6 53 71.7
Solyc09g055460.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 2.3e-09 66.2 50 64.0
EL10Ac8g19693 Beta vulgaris HOM05D004456 ORTHO05D005287 3.7e-07 58.9 43 67.4
Sed0026344 Sechium edule HOM05D007792 ORTHO05D009931 2.4e-06 56.2 87 35.6
Sed0027103 Sechium edule HOM05D007792 ORTHO05D009931 2.4e-06 56.2 87 35.6
MELO3C027088.2 Cucumis melo HOM05D007792 ORTHO05D009931 9.0e-06 54.3 87 35.6
MELO3C028023.2 Cucumis melo HOM05D007792 ORTHO05D009931 9.0e-06 54.3 87 35.6


User provided reference genes

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