Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 6.0e-294 1013.4 519 100.0
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 1.2e-108 397.9 561 45.5
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 2.0e-103 380.6 558 43.4
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 4.3e-98 362.8 541 45.5
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 4.0e-96 356.3 543 42.7
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 2.2e-94 350.5 510 43.9
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 3.0e-91 340.1 306 63.4
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 8.6e-91 338.6 535 39.6
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 5.6e-90 335.9 542 41.9
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 4.0e-88 329.7 548 41.1
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 5.2e-88 329.3 510 41.8
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.0e-87 327.4 455 45.1
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 9.8e-87 325.1 571 41.2
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.7e-86 324.3 524 39.5
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 3.2e-85 320.1 485 41.4
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 4.1e-85 319.7 551 39.0
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 5.4e-85 319.3 509 41.8
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 9.2e-85 318.5 517 41.8
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 4.6e-84 316.2 524 39.1
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 7.3e-82 308.9 518 39.8
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 6.2e-81 305.8 552 40.0
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 8.1e-81 305.4 537 38.9
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 8.1e-81 305.4 500 41.2
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 2.3e-80 303.9 538 41.1
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 3.1e-80 303.5 542 39.9
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 3.1e-80 303.5 542 39.9
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 5.2e-80 302.8 512 39.8
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 1.5e-79 301.2 463 43.4
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 1.5e-79 301.2 531 41.1
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 3.4e-79 300.1 540 40.0
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 4.4e-79 299.7 529 37.2
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.4e-79 299.7 528 40.9
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 5.8e-79 299.3 509 38.7
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 9.9e-79 298.5 526 40.7
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.7e-78 297.7 513 39.6
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 6.4e-78 295.8 517 38.5
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.4e-77 294.7 515 39.8
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 9.2e-77 292.0 435 41.1
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 1.2e-76 291.6 532 38.0
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.6e-76 291.2 514 39.5
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 3.5e-76 290.0 333 49.5
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 2.3e-75 287.3 548 37.2
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 5.1e-75 286.2 551 37.2
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.9e-74 284.3 324 49.7
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 1.9e-74 284.3 540 38.5
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 2.5e-74 283.9 562 37.7
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 4.7e-73 279.6 388 45.1
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 1.1e-72 278.5 512 37.5
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 1.4e-72 278.1 502 38.8
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 4.0e-72 276.6 533 39.2
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 1.5e-71 274.6 509 37.5
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 3.4e-71 273.5 494 38.3
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 3.4e-71 273.5 440 40.7
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 5.8e-71 272.7 537 34.8
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 7.1e-69 265.8 529 38.0
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 7.8e-68 262.3 566 34.5
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 1.3e-67 261.5 550 36.7
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 3.0e-67 260.4 502 37.8
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 3.9e-67 260.0 340 45.0
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 1.5e-66 258.1 521 38.6
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 3.3e-66 256.9 537 37.1
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 7.3e-66 255.8 528 35.6
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 9.6e-66 255.4 531 37.5
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 9.6e-66 255.4 502 37.8
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 1.3e-65 255.0 538 34.9
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.3e-65 255.0 423 40.4
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 1.6e-65 254.6 494 36.8
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 3.6e-65 253.4 536 35.6
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 4.8e-65 253.1 529 36.3
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 1.1e-64 251.9 525 39.2
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 1.4e-64 251.5 497 36.6
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 3.1e-64 250.4 439 39.4
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 5.3e-64 249.6 528 35.2
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 6.9e-64 249.2 526 39.5
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 9.0e-64 248.8 421 40.1
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 2.0e-63 247.7 312 51.3
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 2.6e-63 247.3 542 37.1
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 2.6e-63 247.3 500 36.8
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 3.4e-63 246.9 541 37.0
Dinv09537 Davidia involucrata HOM05D006380 ORTHO05D008400 3.4e-63 246.9 451 36.4
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 7.6e-63 245.7 550 34.0
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 1.3e-62 245.0 527 39.7
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.3e-62 245.0 491 37.1
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.3e-62 245.0 488 37.3
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 4.9e-62 243.0 528 39.4
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 8.4e-62 242.3 526 39.0
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 8.4e-62 242.3 488 36.9
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.4e-61 240.7 301 44.5
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 7.1e-61 239.2 289 45.3
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 2.7e-60 237.3 526 34.8
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 4.6e-60 236.5 525 34.7
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.0e-59 235.3 453 39.5
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 3.0e-59 233.8 526 34.6
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 6.7e-59 232.6 506 34.8
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.5e-58 231.5 526 37.5
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 2.5e-58 230.7 522 33.9
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 3.3e-58 230.3 515 35.1
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 7.4e-58 229.2 527 38.3
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 9.6e-58 228.8 532 36.1
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 2.8e-57 227.3 542 34.3
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 1.8e-56 224.6 527 32.8
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 2.6e-55 220.7 271 47.2
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 2.6e-55 220.7 242 51.7
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 3.4e-55 220.3 417 37.2
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 1.3e-54 218.4 528 35.0
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 1.3e-54 218.4 476 36.6
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 4.9e-54 216.5 525 32.2
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 1.3e-49 201.8 636 31.1
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 2.1e-49 201.1 583 32.9
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 1.4e-48 198.4 409 35.2
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 2.6e-47 194.1 340 36.2
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.1e-45 188.7 418 35.6
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 1.9e-45 188.0 481 32.8
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 5.5e-45 186.4 231 44.6
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.6e-44 184.9 426 34.3
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 2.1e-44 184.5 481 34.7
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 6.7e-43 179.5 280 39.3
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 3.3e-42 177.2 441 33.1
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 7.4e-42 176.0 255 42.4
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 7.4e-42 176.0 450 33.3
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 2.8e-41 174.1 265 40.0
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 1.2e-39 168.7 442 32.4
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 1.2e-39 168.7 251 38.6
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 1.5e-39 168.3 442 32.8
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.5e-39 168.3 441 32.0
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 8.5e-38 162.5 570 29.1
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 1.1e-37 162.2 240 36.7
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 3.2e-37 160.6 442 31.4
PGR119G2181 Punica granatum HOM05D003497 ORTHO05D003964 9.3e-37 159.1 217 50.2
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 1.2e-36 158.7 442 32.1
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 1.6e-36 158.3 269 41.3
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.8e-35 154.8 261 39.1
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 2.3e-35 154.5 445 31.0
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 5.1e-35 153.3 255 40.8
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 6.7e-35 152.9 265 34.0
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 8.7e-35 152.5 503 31.0
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 8.7e-35 152.5 441 31.3
MD10G1175800 Malus domestica HOM05D003497 ORTHO05D003964 1.9e-34 151.4 252 38.1
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 9.7e-34 149.1 248 35.5
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 9.7e-34 149.1 302 31.8
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 2.8e-33 147.5 248 35.5
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 2.8e-33 147.5 307 32.6
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 4.8e-33 146.7 254 37.0
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 3.4e-31 140.6 528 30.9
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 4.5e-31 140.2 292 33.9
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.3e-30 138.7 247 37.7
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 1.7e-30 138.3 294 34.0
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 2.2e-30 137.9 243 39.9
Haze_10290 Corylus avellana HOM05D003497 ORTHO05D003964 2.2e-30 137.9 267 37.8
Sed0003270 Sechium edule HOM05D003497 ORTHO05D003964 2.2e-30 137.9 449 28.7
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 6.5e-30 136.3 537 28.7
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 8.5e-30 136.0 278 35.3
Actinidia04396 Actinidia chinensis HOM05D003497 ORTHO05D003964 1.1e-29 135.6 267 34.5
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 3.2e-29 134.0 213 36.2
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.2e-29 133.7 314 31.2
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 4.2e-29 133.7 213 36.2
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 7.2e-29 132.9 440 29.1
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.2e-28 132.1 293 33.1
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 7.9e-28 129.4 430 31.2
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 8.2e-25 119.4 126 50.0
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 1.5e-23 115.2 456 27.0
PSO017G1120 Papaver somniferum HOM05D003497 ORTHO05D003964 2.5e-21 107.8 245 33.1
SMO270G0122 Selaginella moellendorffii HOM05D003497 ORTHO05D003964 3.2e-21 107.5 193 36.3
HanXRQChr10g0290271 Helianthus annuus HOM05D003497 ORTHO05D003964 3.9e-19 100.5 148 37.2
Migut.B00467 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.1e-18 99.0 398 25.6
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.5e-18 98.6 208 35.1
SEGI_41103 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 3.7e-17 94.0 239 31.0
Potri.017G134500 Populus trichocarpa HOM05D003497 ORTHO05D003964 2.6e-15 87.8 107 46.7
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 2.6e-15 87.8 149 38.9
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 8.5e-14 82.8 221 33.5
C08p22090 Brassica napus HOM05D003497 ORTHO05D024176 2.1e-12 78.2 145 37.9
BolC8t49854H Brassica oleracea HOM05D003497 ORTHO05D024176 2.1e-12 78.2 145 37.9
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 3.6e-12 77.4 204 30.9
Sed0009840 Sechium edule HOM05D003497 ORTHO05D003964 4.0e-11 73.9 221 27.1
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 6.7e-11 73.2 138 34.8
Migut.B00468 Erythranthe guttata HOM05D003497 ORTHO05D003964 2.6e-10 71.2 232 28.4
CiPaw.08G128300 Carya illinoinensis HOM05D000212 ORTHO05D003964 3.3e-10 70.9 89 47.2
BcaC02g08834 Brassica carinata HOM05D003497 ORTHO05D003964 5.7e-10 70.1 169 34.3
BcaC02g08838 Brassica carinata HOM05D003497 ORTHO05D003964 5.7e-10 70.1 169 34.3
BcaC07g39213 Brassica carinata HOM05D003497 ORTHO05D024176 9.7e-10 69.3 143 37.1
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 1.7e-09 68.6 81 44.4
C03p57300 Brassica napus HOM05D003497 ORTHO05D003964 8.2e-09 66.2 158 34.8
Os10g0133100 Oryza sativa ssp. japonica HOM05D019728 ORTHO05D023023 1.1e-08 65.9 267 25.1
MCO07G198 Micromonas commoda HOM05D003497 ORTHO05D003964 3.1e-08 64.3 428 22.2
Cre17.g738800 Chlamydomonas reinhardtii HOM05D003497 ORTHO05D003964 2.7e-07 61.2 173 28.3
arahy.Tifrunner.gnm1.ann1.HH0ZDZ Arachis hypogaea HOM05D003497 ORTHO05D003964 5.9e-07 60.1 70 45.7
PSO017G5705 Papaver somniferum HOM05D003497 ORTHO05D003964 5.9e-07 60.1 106 39.6
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 1.3e-06 58.9 81 39.5


User provided reference genes

Program Settings