Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0030 Punica granatum HOM05D007536 ORTHO05D009390 8.6e-95 352.1 175 100.0
GSVIVG01023504001 Vitis vinifera HOM05D007536 ORTHO05D009390 1.1e-25 122.5 167 43.7
QL03p030462 Quercus lobata HOM05D007536 ORTHO05D009390 1.2e-24 119.0 180 43.9
CiPaw.15G107000 Carya illinoinensis HOM05D007536 ORTHO05D009390 1.9e-22 111.7 182 41.8
Eucgr.B02149 Eucalyptus grandis HOM05D007536 ORTHO05D009390 3.3e-22 110.9 183 43.2
Cpa.g.sc162.41 Carica papaya HOM05D007536 ORTHO05D009390 3.7e-21 107.5 133 44.4
Haze_04425 Corylus avellana HOM05D007536 ORTHO05D009390 8.2e-21 106.3 184 39.7
Manes.08G053700 Manihot esculenta HOM05D007536 ORTHO05D009390 1.4e-20 105.5 181 38.7
Hma1.2p1_2103F.1_g314080 Hydrangea macrophylla HOM05D007536 ORTHO05D009390 1.8e-20 105.1 184 39.7
Lj2C43T1 Lonicera japonica HOM05D007536 ORTHO05D009390 3.1e-20 104.4 180 38.9
Dinv18987 Davidia involucrata HOM05D007536 ORTHO05D009390 4.1e-20 104.0 185 38.9
CSS0008501 Camellia sinensis var. sinensis HOM05D007536 ORTHO05D009390 9.1e-20 102.8 180 40.6
Thecc.05G270900 Theobroma cacao HOM05D007536 ORTHO05D009390 1.2e-19 102.4 180 37.8
Sabra19G0031900 Salix brachista HOM05D007536 ORTHO05D009390 2.6e-19 101.3 179 36.9
Potri.019G019200 Populus trichocarpa HOM05D007536 ORTHO05D009390 1.3e-18 99.0 179 36.9
Atru.chr2.985 Acer truncatum HOM05D007536 ORTHO05D009390 2.2e-18 98.2 179 38.5
Dinv24676 Davidia involucrata HOM05D007536 ORTHO05D009390 2.9e-18 97.8 137 43.1
Gohir.A13G167300 Gossypium hirsutum HOM05D007536 ORTHO05D009390 2.9e-18 97.8 180 35.0
FvH4_6g01910 Fragaria vesca HOM05D007536 ORTHO05D009390 2.5e-17 94.7 181 37.0
Gohir.D13G172800 Gossypium hirsutum HOM05D007536 ORTHO05D009390 2.5e-17 94.7 182 34.6
Gorai.013G187800 Gossypium raimondii HOM05D007536 ORTHO05D009390 3.2e-17 94.4 180 33.9
Nn1g02810 Nelumbo nucifera HOM05D007536 ORTHO05D009390 3.2e-17 94.4 176 36.9
TAR636G1433 Trochodendron aralioides HOM05D007536 ORTHO05D009390 3.2e-17 94.4 186 38.2
FAN09G4642 Fragaria x ananassa HOM05D007536 ORTHO05D009390 5.5e-17 93.6 181 37.0
Peaxi162Scf00528g00022 Petunia axillaris HOM05D007536 ORTHO05D009390 5.5e-17 93.6 162 38.3
TAR362G0895 Trochodendron aralioides HOM05D007536 ORTHO05D009390 5.5e-17 93.6 182 35.2
MD04G1230200 Malus domestica HOM05D007536 ORTHO05D009390 1.2e-16 92.4 180 34.4
Nitab4.5_0003780g0060 Nicotiana tabacum HOM05D007536 ORTHO05D009390 1.6e-16 92.0 167 35.9
ClCG03G009740 Citrullus lanatus HOM05D007536 ORTHO05D009390 2.1e-16 91.7 138 42.8
FAN14G0137 Fragaria x ananassa HOM05D007536 ORTHO05D009390 3.6e-16 90.9 181 36.5
Prupe.6G350100 Prunus persica HOM05D007536 ORTHO05D009390 6.1e-16 90.1 161 35.4
Sopen04g005180 Solanum pennellii HOM05D007536 ORTHO05D009390 1.0e-15 89.4 162 37.0
Nitab4.5_0006737g0040 Nicotiana tabacum HOM05D007536 ORTHO05D009390 1.4e-15 89.0 167 35.3
TWI38G0843 Tripterygium wilfordii HOM05D007536 ORTHO05D009390 1.4e-15 89.0 177 37.9
Duzib177G0261 Durio zibethinus HOM05D007536 ORTHO05D009390 1.8e-15 88.6 185 34.1
COL.COLO4_15481 Corchorus olitorius HOM05D007536 ORTHO05D009390 2.3e-15 88.2 180 34.4
MELO3C010129.2 Cucumis melo HOM05D007536 ORTHO05D009390 2.3e-15 88.2 147 38.8
Sp1g07270 Schrenkiella parvula HOM05D007536 ORTHO05D009390 3.0e-15 87.8 101 50.5
Sed0012628 Sechium edule HOM05D007536 ORTHO05D009390 6.7e-15 86.7 137 38.7
Sc20g0000630 Simmondsia chinensis HOM05D007536 ORTHO05D009390 6.7e-15 86.7 119 46.2
RcHm_v2.0_Chr3g0449641 Rosa chinensis HOM05D007536 ORTHO05D009390 1.1e-14 85.9 180 33.9
CANSAT54G0748 Cannabis sativa HOM05D007536 ORTHO05D009390 1.5e-14 85.5 183 35.0
Thhalv10007213m.g Eutrema salsugineum HOM05D007536 ORTHO05D009390 2.6e-14 84.7 100 45.0
Gohir.A11G247400 Gossypium hirsutum HOM05D007536 ORTHO05D009390 2.6e-14 84.7 181 34.8
SalBow1G3025 Salvia bowleyana HOM05D007536 ORTHO05D009390 2.6e-14 84.7 55 72.7
Solyc04g010050.4 Solanum lycopersicum HOM05D007536 ORTHO05D009390 2.6e-14 84.7 156 38.5
THA.LOC104821264 Tarenaya hassleriana HOM05D007536 ORTHO05D009390 2.6e-14 84.7 99 49.5
Aa31LG11G11200 Aethionema arabicum HOM05D007536 ORTHO05D009390 3.3e-14 84.3 80 53.8
Ca_10014_v3 Cicer arietinum L. HOM05D007536 ORTHO05D009390 3.3e-14 84.3 80 55.0
Cc02_g08820 Coffea canephora HOM05D007536 ORTHO05D009390 3.3e-14 84.3 175 33.7
Gohir.D11G257700 Gossypium hirsutum HOM05D007536 ORTHO05D009390 4.4e-14 84.0 182 33.5
Gorai.007G276000 Gossypium raimondii HOM05D007536 ORTHO05D009390 4.4e-14 84.0 182 33.5
AL1G19040 Arabidopsis lyrata HOM05D007536 ORTHO05D009390 7.4e-14 83.2 55 67.3
AT1G08610 Arabidopsis thaliana HOM05D007536 ORTHO05D009390 7.4e-14 83.2 55 67.3
Actinidia34755 Actinidia chinensis HOM05D007536 ORTHO05D009390 1.3e-13 82.4 55 67.3
Carub.0001s0797 Capsella rubella HOM05D007536 ORTHO05D009390 1.3e-13 82.4 61 63.9
Ciclev10019470m.g Citrus clementina HOM05D007536 ORTHO05D009390 1.3e-13 82.4 94 51.1
BraA09t41926Z Brassica rapa HOM05D007536 ORTHO05D009390 2.2e-13 81.6 55 65.5
FAN05G1587 Fragaria x ananassa HOM05D007536 ORTHO05D009390 2.2e-13 81.6 106 42.5
vmacro10366 Vaccinium macrocarpon HOM05D007536 ORTHO05D009390 2.2e-13 81.6 184 34.8
A09p65820 Brassica napus HOM05D007536 ORTHO05D009390 2.8e-13 81.3 55 65.5
FAN05G2252 Fragaria x ananassa HOM05D007536 ORTHO05D009390 2.8e-13 81.3 109 41.3
FAN14G3895 Fragaria x ananassa HOM05D007536 ORTHO05D009390 2.8e-13 81.3 109 41.3
CARHR008520 Cardamine hirsuta HOM05D007536 ORTHO05D009390 4.8e-13 80.5 144 33.3
Oeu000315.1 Olea europaea HOM05D007536 ORTHO05D009390 4.8e-13 80.5 153 40.5
CAN.G358.142 Capsicum annuum HOM05D007536 ORTHO05D009390 6.3e-13 80.1 162 34.6
DCAR_023085 Daucus carota HOM05D007536 ORTHO05D009390 1.1e-12 79.3 172 32.6
Glyma.20G222900 Glycine max HOM05D007536 ORTHO05D009390 1.1e-12 79.3 93 50.5
CsaV3_1G045080 Cucumis sativus L. HOM05D007536 ORTHO05D009390 1.4e-12 79.0 127 41.7
Rhsim09G0137000 Rhododendron simsii HOM05D007536 ORTHO05D009390 1.4e-12 79.0 181 33.7
Ah.04g163100 Amaranthus hybridus HOM05D007536 ORTHO05D009390 1.8e-12 78.6 101 43.6
MSTRG.10543 Avicennia marina HOM05D007536 ORTHO05D009390 1.8e-12 78.6 183 35.0
Medtr1g080120 Medicago truncatula HOM05D007536 ORTHO05D009390 1.8e-12 78.6 55 67.3
BcaC07g41933 Brassica carinata HOM05D007536 ORTHO05D009390 2.4e-12 78.2 55 61.8
C08p49910 Brassica napus HOM05D007536 ORTHO05D009390 2.4e-12 78.2 55 61.8
BolC8t52519H Brassica oleracea HOM05D007536 ORTHO05D009390 3.1e-12 77.8 69 53.6
COL.COLO4_15479 Corchorus olitorius HOM05D007536 ORTHO05D009390 5.3e-12 77.0 115 43.5
Lsat_1_v5_gn_8_24901 Lactuca sativa HOM05D007536 ORTHO05D009390 6.9e-12 76.6 100 47.0
Lalb_Chr21g0311181 Lupinus albus HOM05D007536 ORTHO05D009390 6.9e-12 76.6 53 64.2
Sed0002849 Sechium edule HOM05D007536 ORTHO05D009390 6.9e-12 76.6 139 38.1
Lalb_Chr02g0149121 Lupinus albus HOM05D007536 ORTHO05D009390 9.1e-12 76.3 53 64.2
Lj5g0027095 Lotus japonicus HOM05D007536 ORTHO05D009390 1.5e-11 75.5 169 36.1
VMungo0720G1101 Vigna mungo HOM05D007536 ORTHO05D009390 2.0e-11 75.1 56 62.5
AUR62004838 Chenopodium quinoa HOM05D007536 ORTHO05D009390 4.5e-11 73.9 98 42.9
Migut.L01514 Erythranthe guttata HOM05D007536 ORTHO05D009390 4.5e-11 73.9 120 36.7
TPR.G22324 Trifolium pratense HOM05D007536 ORTHO05D009390 4.5e-11 73.9 80 52.5
FAN02G3965 Fragaria x ananassa HOM05D007536 ORTHO05D009390 5.9e-11 73.6 53 62.3
Phvul.008G151830 Phaseolus vulgaris HOM05D007536 ORTHO05D009390 5.9e-11 73.6 82 54.9
Aqoxy5G00211 Aquilegia oxysepala HOM05D007536 ORTHO05D009390 1.0e-10 72.8 57 56.1
MBI10_g13809_MAGBIO Magnolia biondii HOM05D007536 ORTHO05D009390 1.3e-10 72.4 138 35.5
AUR62040928 Chenopodium quinoa HOM05D007536 ORTHO05D009390 3.8e-10 70.9 119 40.3
PSO210G0145 Papaver somniferum HOM05D007536 ORTHO05D009390 1.1e-09 69.3 120 35.0
MBI07_g16910_MAGBIO Magnolia biondii HOM05D007536 ORTHO05D009390 1.9e-09 68.6 114 40.4
Psat6g142640 Pisum sativum HOM05D007536 ORTHO05D009390 1.9e-09 68.6 183 34.4
CDE04G1469 Ceratophyllum demersum HOM05D007536 ORTHO05D009390 7.2e-09 66.6 102 39.2
ATR0736G097 Amborella trichopoda HOM05D007536 ORTHO05D009390 2.1e-08 65.1 57 52.6
ECA233G3269 Erigeron canadensis HOM05D007536 ORTHO05D009390 4.7e-08 63.9 77 45.5
PGR119G1066 Punica granatum HOM05D000855 ORTHO05D000003 4.7e-08 63.9 40 80.0
HanXRQChr07g0204491 Helianthus annuus HOM05D007536 ORTHO05D009390 2.3e-07 61.6 56 53.6
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 6.7e-07 60.1 78 42.3


User provided reference genes

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