Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR120G0011 Punica granatum HOM05D002857 ORTHO05D008347 1.7e-117 426.0 212 100.0
PGR142G0748 Punica granatum HOM05D002857 ORTHO05D008347 1.4e-116 422.9 212 99.5
Manes.10G081600 Manihot esculenta HOM05D002857 ORTHO05D008347 1.3e-77 293.5 174 78.7
Potri.009G088200 Populus trichocarpa HOM05D002857 ORTHO05D008347 1.4e-76 290.0 175 78.3
Atru.chr5.2351 Acer truncatum HOM05D002857 ORTHO05D008347 4.2e-76 288.5 191 71.7
Duzib132G1128 Durio zibethinus HOM05D002857 ORTHO05D008347 7.1e-76 287.7 171 78.4
Sabra09G0068300 Salix brachista HOM05D002857 ORTHO05D008347 1.6e-75 286.6 175 77.1
Gohir.D12G019900 Gossypium hirsutum HOM05D002857 ORTHO05D008347 2.7e-75 285.8 178 76.4
Gorai.008G020300 Gossypium raimondii HOM05D002857 ORTHO05D008347 3.5e-75 285.4 178 76.4
RcHm_v2.0_Chr6g0253801 Rosa chinensis HOM05D002857 ORTHO05D008347 3.5e-75 285.4 219 65.8
vmacro19465 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 4.6e-75 285.0 195 69.2
vmacro23229 Vaccinium macrocarpon HOM05D002857 ORTHO05D008347 4.6e-75 285.0 195 69.2
CiPaw.05G017800 Carya illinoinensis HOM05D002857 ORTHO05D008347 1.3e-74 283.5 223 65.0
Actinidia34361 Actinidia chinensis HOM05D002857 ORTHO05D008347 5.1e-74 281.6 167 79.6
Cfa009507 Carpinus fangiana HOM05D002857 ORTHO05D008347 5.1e-74 281.6 184 72.8
COL.COLO4_32514 Corchorus olitorius HOM05D002857 ORTHO05D007919 5.1e-74 281.6 182 72.5
Dinv15807 Davidia involucrata HOM05D002857 ORTHO05D008347 6.7e-74 281.2 165 80.6
Prupe.8G144800 Prunus persica HOM05D002857 ORTHO05D008347 8.7e-74 280.8 218 62.8
Thecc.02G117000 Theobroma cacao HOM05D002857 ORTHO05D008347 8.7e-74 280.8 166 77.1
Gohir.A12G019700 Gossypium hirsutum HOM05D002857 ORTHO05D008347 1.1e-73 280.4 177 75.1
Cpa.g.sc106.48 Carica papaya HOM05D002857 ORTHO05D008347 1.9e-73 279.6 199 67.8
Cfa004654 Carpinus fangiana HOM05D002857 ORTHO05D008347 1.9e-73 279.6 169 76.3
Haze_10256 Corylus avellana HOM05D002857 ORTHO05D008347 1.9e-73 279.6 185 71.4
CSS0041876 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D008347 2.5e-73 279.3 190 71.1
TWI14G1023 Tripterygium wilfordii HOM05D002857 ORTHO05D008347 2.5e-73 279.3 182 71.4
GSVIVG01037837001 Vitis vinifera HOM05D002857 ORTHO05D008347 2.5e-73 279.3 165 81.2
Ciclev10029201m.g Citrus clementina HOM05D002857 ORTHO05D008347 3.3e-73 278.9 164 77.4
Eucgr.I01062 Eucalyptus grandis HOM05D002857 ORTHO05D008347 3.3e-73 278.9 167 76.6
FvH4_2g04342 Fragaria vesca HOM05D002857 ORTHO05D008347 5.6e-73 278.1 217 65.9
unitig_749.g13509 Utricularia gibba HOM05D002857 ORTHO05D008347 2.1e-72 276.2 196 69.4
CiPaw.06G165500 Carya illinoinensis HOM05D002857 ORTHO05D008347 3.7e-72 275.4 165 77.0
QL07p014115 Quercus lobata HOM05D002857 ORTHO05D008347 4.8e-72 275.0 164 79.3
MD05G1100100 Malus domestica HOM05D002857 ORTHO05D008347 6.2e-72 274.6 177 71.8
MSTRG.27764 Avicennia marina HOM05D002857 ORTHO05D008347 1.4e-71 273.5 190 69.5
CANSAT35G0667 Cannabis sativa HOM05D002857 ORTHO05D008347 2.4e-71 272.7 194 69.6
TAR381G0590 Trochodendron aralioides HOM05D002857 ORTHO05D008347 2.4e-71 272.7 199 67.8
Glyma.17G078200 Glycine max HOM05D002857 ORTHO05D008347 3.1e-71 272.3 167 74.9
Nn5g30580 Nelumbo nucifera HOM05D002857 ORTHO05D008347 4.0e-71 271.9 197 67.0
MD05G1100400 Malus domestica HOM05D002857 ORTHO05D008347 5.3e-71 271.6 177 71.2
Medtr4g109520 Medicago truncatula HOM05D002857 ORTHO05D008347 6.9e-71 271.2 175 72.6
Oeu010450.1 Olea europaea HOM05D002857 ORTHO05D008347 9.0e-71 270.8 167 74.3
Cfa010108 Carpinus fangiana HOM05D002857 ORTHO05D008347 2.0e-70 269.6 187 70.1
Lalb_Chr06g0165111 Lupinus albus HOM05D002857 ORTHO05D008347 2.0e-70 269.6 184 69.6
Lj4g0011899 Lotus japonicus HOM05D002857 ORTHO05D008347 4.5e-70 268.5 191 65.4
TPR.G2009 Trifolium pratense HOM05D002857 ORTHO05D008347 1.3e-69 266.9 201 64.2
Potri.001G293700 Populus trichocarpa HOM05D002857 ORTHO05D008347 2.2e-69 266.2 171 72.5
CAN.G606.59 Capsicum annuum HOM05D002857 ORTHO05D008347 2.9e-69 265.8 189 66.1
Nitab4.5_0008075g0040 Nicotiana tabacum HOM05D002857 ORTHO05D008347 2.9e-69 265.8 165 75.8
Solyc01g107020.4 Solanum lycopersicum HOM05D002857 ORTHO05D008347 2.9e-69 265.8 209 62.2
Phvul.003G185000 Phaseolus vulgaris HOM05D002857 ORTHO05D008347 3.8e-69 265.4 165 75.2
DCAR_001699 Daucus carota HOM05D002857 ORTHO05D008347 6.5e-69 264.6 202 63.4
Aqoxy6G02637 Aquilegia oxysepala HOM05D002857 ORTHO05D008347 1.1e-68 263.8 181 69.1
Sed0016408 Sechium edule HOM05D002857 ORTHO05D008347 1.1e-68 263.8 165 72.7
Cc02_g19860 Coffea canephora HOM05D002857 ORTHO05D008347 1.4e-68 263.5 161 72.7
Peaxi162Scf00016g02839 Petunia axillaris HOM05D002857 ORTHO05D008347 4.2e-68 261.9 165 73.9
SGA_v2.0_scaffold219G42527 Striga asiatica HOM05D002857 ORTHO05D008347 4.2e-68 261.9 168 70.2
Psat0s3618g0120 Pisum sativum HOM05D002857 ORTHO05D008347 5.5e-68 261.5 195 63.6
Migut.O00567 Erythranthe guttata HOM05D002857 ORTHO05D008347 7.1e-68 261.2 172 69.2
CsaV3_4G000220 Cucumis sativus L. HOM05D002857 ORTHO05D008347 9.3e-68 260.8 190 66.3
Nitab4.5_0001105g0010 Nicotiana tabacum HOM05D002857 ORTHO05D008347 9.3e-68 260.8 161 75.8
Lj5A219T41 Lonicera japonica HOM05D002857 ORTHO05D008347 1.6e-67 260.0 160 73.8
Migut.N01136 Erythranthe guttata HOM05D002857 ORTHO05D008347 2.1e-67 259.6 172 69.2
Hund00691 Selenicereus undatus HOM05D002857 ORTHO05D008347 2.1e-67 259.6 203 62.1
MELO3C018011.2 Cucumis melo HOM05D002857 ORTHO05D008347 2.7e-67 259.2 165 70.3
Lsat_1_v5_gn_1_103341 Lactuca sativa HOM05D002857 ORTHO05D008347 2.7e-67 259.2 177 68.4
Rhsim11G0151500 Rhododendron simsii HOM05D002133 ORTHO05D008347 7.9e-67 257.7 195 64.1
Rhsim11G0152900 Rhododendron simsii HOM05D002133 ORTHO05D008347 7.9e-67 257.7 195 64.1
ClCG10G010270 Citrullus lanatus HOM05D002857 ORTHO05D008347 1.3e-66 256.9 165 70.9
PSO541G0380 Papaver somniferum HOM05D002857 ORTHO05D008347 3.0e-66 255.8 168 70.8
Sopen01g049290 Solanum pennellii HOM05D002857 ORTHO05D008347 3.0e-66 255.8 165 71.5
Ca_21777_v3 Cicer arietinum L. HOM05D002857 ORTHO05D008347 3.9e-66 255.4 162 74.1
EL10Ac9g22202 Beta vulgaris HOM05D002857 ORTHO05D008347 6.7e-66 254.6 180 64.4
PGSC0003DMG400025744 Solanum tuberosum HOM05D002857 ORTHO05D008347 1.5e-65 253.4 199 63.3
SalBow3G3786 Salvia bowleyana HOM05D002857 ORTHO05D008347 1.9e-65 253.1 180 67.2
HanXRQChr01g0025491 Helianthus annuus HOM05D002857 ORTHO05D008347 2.5e-65 252.7 193 63.2
PSO675G0546 Papaver somniferum HOM05D002857 ORTHO05D008347 2.5e-65 252.7 168 70.8
VMungo1215G1881 Vigna mungo HOM05D002857 ORTHO05D008347 5.7e-65 251.5 161 73.9
AUR62027003 Chenopodium quinoa HOM05D002857 ORTHO05D008347 6.2e-64 248.1 164 68.3
CDE04G2041 Ceratophyllum demersum HOM05D002857 ORTHO05D008347 1.4e-63 246.9 167 68.9
FAN24G3287 Fragaria x ananassa HOM05D001904 ORTHO05D008347 2.9e-61 239.2 217 59.4
HPP92_003268 Vanilla planifolia HOM05D002857 ORTHO05D008347 2.9e-61 239.2 188 61.2
BcaB07g33450 Brassica carinata HOM05D002857 ORTHO05D007919 1.9e-60 236.5 190 59.5
Nn3g19581 Nelumbo nucifera HOM05D002857 ORTHO05D008347 1.9e-60 236.5 165 68.5
Thhalv10011799m.g Eutrema salsugineum HOM05D002857 ORTHO05D008347 3.2e-60 235.7 184 60.9
A06p03450 Brassica napus HOM05D002857 ORTHO05D008347 4.2e-60 235.3 190 59.5
SpUn0137_0020 Schrenkiella parvula HOM05D002857 ORTHO05D008347 4.2e-60 235.3 190 59.5
BcaC08g43176 Brassica carinata HOM05D002857 ORTHO05D007919 9.3e-60 234.2 190 58.9
C06p04760 Brassica napus HOM05D002857 ORTHO05D008347 9.3e-60 234.2 190 58.9
Aa31LG10G4120 Aethionema arabicum HOM05D002857 ORTHO05D008347 4.6e-59 231.9 190 56.8
Os10g0350800 Oryza sativa ssp. japonica HOM05D002857 ORTHO05D008347 6.1e-59 231.5 181 61.9
Carub.0001s3918 Capsella rubella HOM05D002857 ORTHO05D008347 1.1e-57 227.3 161 64.0
THA.LOC104803442 Tarenaya hassleriana HOM05D002857 ORTHO05D008347 1.9e-57 226.5 194 55.7
AL1G57550 Arabidopsis lyrata HOM05D002857 ORTHO05D008347 2.5e-57 226.1 161 63.4
Zm00001eb019030 Zea mays HOM05D002857 ORTHO05D008347 3.3e-57 225.7 171 62.0
BolC6t35606H Brassica oleracea HOM05D002857 ORTHO05D008347 5.7e-57 224.9 161 63.4
BraA06t23553Z Brassica rapa HOM05D002857 ORTHO05D008347 5.7e-57 224.9 161 63.4
Ah.01g006980 Amaranthus hybridus HOM05D002857 ORTHO05D008347 1.2e-54 217.2 163 63.2
ECA234G2213 Erigeron canadensis HOM05D002857 ORTHO05D008347 6.7e-50 201.4 122 74.6
Ciclev10007042m.g Citrus clementina HOM05D002857 ORTHO05D008347 2.0e-49 199.9 145 64.1
SMO361G0227 Selaginella moellendorffii HOM05D002857 ORTHO05D008347 1.7e-48 196.8 171 54.4
AagrBONN_evm.TU.Sc2ySwM_228.4585 Anthoceros agrestis HOM05D002857 ORTHO05D008347 2.5e-44 183.0 162 54.9
Pp3c5_10320 Physcomitrium patens HOM05D002857 ORTHO05D008347 3.6e-43 179.1 162 54.9
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 8.8e-42 174.5 114 71.9
Oeu010448.1 Olea europaea HOM05D002857 ORTHO05D008347 3.7e-40 169.1 112 72.3
arahy.Tifrunner.gnm1.ann1.9CW0PF Arachis hypogaea HOM05D002857 ORTHO05D008347 1.4e-39 167.2 125 67.2
arahy.Tifrunner.gnm1.ann1.AK2UKD Arachis hypogaea HOM05D002857 ORTHO05D008347 2.4e-39 166.4 122 68.9
Glyma.05G021200 Glycine max HOM05D002857 ORTHO05D008347 5.3e-39 165.2 109 71.6
Rhsim11G0151300 Rhododendron simsii HOM05D002133 ORTHO05D002256 6.5e-37 158.3 90 77.8
arahy.Tifrunner.gnm1.ann1.JJ1SBB Arachis hypogaea HOM05D002857 ORTHO05D008347 1.9e-36 156.8 111 69.4
Mapoly0121s0028 Marchantia polymorpha HOM05D002857 ORTHO05D008347 7.2e-36 154.8 159 47.8
CBR_g3894 Chara braunii HOM05D002857 ORTHO05D008347 6.1e-35 151.8 127 59.1
Ciclev10006219m.g Citrus clementina HOM05D002857 ORTHO05D008347 1.4e-34 150.6 122 62.3
SEGI_03434 Sequoiadendron giganteum HOM05D002857 ORTHO05D008347 9.4e-28 127.9 124 53.2
MCO12G139 Micromonas commoda HOM05D002857 ORTHO05D008347 2.0e-25 120.2 161 41.6
Cre05.g247150 Chlamydomonas reinhardtii HOM05D002857 ORTHO05D008347 5.7e-25 118.6 202 33.2
PRCOL_00006372 Prasinoderma coloniale HOM05D002857 ORTHO05D008347 4.8e-24 115.5 164 42.1
QL11p030572 Quercus lobata HOM05D002857 ORTHO05D008347 5.5e-20 102.1 54 81.5
AUR62030843 Chenopodium quinoa HOM05D002857 ORTHO05D008347 1.4e-18 97.4 57 75.4
Cfa021534 Carpinus fangiana HOM05D002857 ORTHO05D008347 3.0e-18 96.3 59 71.2
Sc18g0007410 Simmondsia chinensis HOM05D002857 ORTHO05D008347 1.1e-15 87.8 54 72.2
Sc18g0007450 Simmondsia chinensis HOM05D002857 ORTHO05D008347 1.1e-15 87.8 54 72.2
CARHR040040 Cardamine hirsuta HOM05D002857 ORTHO05D008347 2.3e-13 80.1 67 58.2
Nn5g29163 Nelumbo nucifera HOM05D002857 ORTHO05D008347 2.0e-09 67.0 38 76.3


User provided reference genes

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