Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 2.5e-262 909.1 803 100.0
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.2e-78 298.9 205 80.0
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.8e-63 248.4 215 67.0
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 2.0e-62 245.0 203 67.0
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 7.6e-62 243.0 203 66.0
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 6.4e-61 240.0 214 61.2
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 1.1e-60 239.2 214 65.4
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 1.1e-60 239.2 214 63.1
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 2.4e-60 238.0 200 65.0
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 2.4e-60 238.0 214 63.1
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 5.5e-60 236.9 207 65.2
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 7.1e-60 236.5 214 62.6
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 3.5e-59 234.2 203 66.0
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 6.7e-58 229.9 205 66.3
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 6.7e-58 229.9 201 67.7
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 6.7e-58 229.9 209 64.1
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 1.5e-57 228.8 211 62.1
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 1.9e-57 228.4 200 65.0
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 2.5e-57 228.0 201 67.2
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.5e-57 228.0 201 67.2
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.5e-57 228.0 201 67.2
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 4.3e-57 227.3 210 64.8
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 5.6e-57 226.9 212 61.8
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 7.4e-57 226.5 207 63.8
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 1.6e-56 225.3 200 64.5
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 3.7e-56 224.2 207 62.3
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 3.7e-56 224.2 211 60.2
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 6.2e-56 223.4 207 61.8
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 6.9e-55 219.9 212 59.0
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 6.9e-55 219.9 170 69.4
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 1.2e-54 219.2 211 64.0
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.6e-54 218.0 201 63.2
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.3e-53 215.7 207 61.4
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 2.9e-53 214.5 160 71.9
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.8e-53 214.2 214 60.7
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 8.4e-53 213.0 207 58.5
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.9e-52 211.8 182 67.0
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 2.5e-52 211.5 183 66.1
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.5e-52 211.5 182 65.9
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.5e-52 211.5 182 66.5
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 2.1e-51 208.4 220 60.0
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 4.6e-51 207.2 211 58.8
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 6.0e-51 206.8 205 62.0
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 6.0e-51 206.8 183 66.1
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 6.0e-51 206.8 183 65.6
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 7.9e-51 206.5 211 59.2
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 1.3e-50 205.7 214 56.5
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.3e-50 205.7 207 60.9
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 1.8e-50 205.3 212 59.4
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 3.0e-50 204.5 212 58.0
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 5.1e-50 203.8 202 61.4
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 5.1e-50 203.8 202 61.4
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 6.7e-50 203.4 205 61.0
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 8.7e-50 203.0 197 62.4
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 8.7e-50 203.0 207 58.5
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 1.1e-49 202.6 147 74.1
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 4.3e-49 200.7 205 60.5
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 5.7e-49 200.3 210 61.0
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 7.4e-49 199.9 205 60.5
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 7.4e-49 199.9 216 57.9
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 9.7e-49 199.5 203 60.1
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 2.2e-48 198.4 214 57.9
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 2.2e-48 198.4 214 57.9
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 3.7e-48 197.6 197 58.9
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 8.2e-48 196.4 204 57.8
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 1.4e-47 195.7 189 60.8
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.1e-47 194.1 152 71.1
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 5.3e-47 193.7 206 58.7
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 6.9e-47 193.4 160 68.1
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 2.6e-46 191.4 146 69.9
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 4.5e-46 190.7 148 68.9
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 5.9e-46 190.3 231 54.1
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 7.7e-46 189.9 152 69.7
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.2e-45 188.3 202 60.9
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 5.0e-45 187.2 205 58.0
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 8.5e-45 186.4 208 55.3
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.1e-44 186.0 198 56.6
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.1e-44 186.0 215 54.0
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.4e-44 185.7 203 57.6
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 5.5e-44 183.7 193 60.6
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 7.2e-44 183.3 132 72.0
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 9.4e-44 183.0 162 66.7
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.2e-43 182.6 215 53.0
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 3.6e-43 181.0 206 54.9
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 3.6e-43 181.0 146 69.9
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 6.1e-43 180.3 195 59.0
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.8e-42 178.7 207 53.1
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 3.9e-42 177.6 146 69.2
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 1.1e-41 176.0 101 87.1
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 1.1e-41 176.0 185 60.5
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.9e-41 175.3 146 65.1
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 1.9e-41 175.3 101 86.1
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.3e-40 172.6 207 52.7
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 1.7e-40 172.2 100 85.0
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 3.7e-40 171.0 192 57.3
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 8.2e-40 169.9 120 75.8
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 2.4e-39 168.3 205 50.7
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 5.3e-39 167.2 146 63.7
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 6.9e-39 166.8 205 52.7
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 9.1e-39 166.4 120 72.5
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 1.5e-38 165.6 108 76.9
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 2.0e-38 165.2 184 57.1
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.4e-38 164.5 103 80.6
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 3.4e-38 164.5 133 67.7
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 4.5e-38 164.1 188 56.9
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 6.5e-37 160.2 178 53.4
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 8.5e-37 159.8 132 68.9
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.1e-36 159.5 111 75.7
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 4.2e-36 157.5 212 50.0
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 4.2e-36 157.5 118 69.5
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 7.9e-35 153.3 170 52.4
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 2.3e-34 151.8 188 48.4
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 3.0e-34 151.4 90 80.0
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 3.3e-33 147.9 172 50.0
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 5.7e-33 147.1 166 52.4
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 1.3e-32 146.0 88 83.0
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 4.8e-32 144.1 186 48.9
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 8.2e-32 143.3 144 58.3
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 2.6e-30 138.3 92 78.3
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.7e-29 135.6 80 82.5
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 2.5e-28 131.7 164 55.5
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.5e-28 131.7 81 81.5
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 4.2e-28 131.0 118 61.9
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 9.4e-28 129.8 133 58.6
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 2.7e-27 128.3 172 52.9
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 4.7e-27 127.5 184 44.6
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 5.2e-26 124.0 151 51.0
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 5.2e-26 124.0 151 51.0
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.5e-25 122.5 100 65.0
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.0e-25 122.1 103 66.0
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 9.7e-25 119.8 103 65.0
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 6.3e-24 117.1 100 60.0
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.4e-23 115.9 126 56.3
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 1.4e-23 115.9 105 61.0
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 4.1e-23 114.4 106 57.5
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 7.0e-23 113.6 104 62.5
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 9.1e-23 113.2 105 58.1
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 1.6e-22 112.5 104 59.6
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 4.5e-22 110.9 101 60.4
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 4.5e-22 110.9 109 56.0
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 7.7e-22 110.2 106 57.5
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 1.0e-21 109.8 107 57.9
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 2.2e-21 108.6 104 60.6
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.9e-21 108.2 102 54.9
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 8.5e-21 106.7 152 49.3
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 2.5e-20 105.1 124 54.0
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 2.5e-20 105.1 105 51.4
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 2.5e-20 105.1 157 47.1
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 2.1e-19 102.1 112 55.4
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.7e-19 100.9 163 40.5
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.8e-18 99.0 52 88.5
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 8.2e-16 90.1 108 53.7
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 5.3e-15 87.4 126 48.4
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 2.7e-14 85.1 111 45.0
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 3.5e-14 84.7 99 46.5
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 1.7e-13 82.4 146 40.4
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 2.2e-13 82.0 65 76.9
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 1.9e-12 79.0 83 57.8
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 2.7e-11 75.1 48 79.2
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 3.6e-11 74.7 67 58.2
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 5.2e-10 70.9 170 34.1
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 4.4e-09 67.8 67 58.2
Thecc.09G051000 Theobroma cacao HOM05D004041 ORTHO05D004564 2.4e-07 62.0 55 56.4
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 9.1e-07 60.1 64 50.0


User provided reference genes

Program Settings