Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G2478 Punica granatum HOM05D007613 ORTHO05D009344 2.0e-68 262.3 130 100.0
Eucgr.H01109 Eucalyptus grandis HOM05D007613 ORTHO05D009344 9.8e-52 206.8 129 76.0
Ciclev10022836m.g Citrus clementina HOM05D007613 ORTHO05D009344 3.9e-48 194.9 129 72.9
CiPaw.07G109200 Carya illinoinensis HOM05D007613 ORTHO05D009344 8.6e-48 193.7 131 73.3
Potri.014G128900 Populus trichocarpa HOM05D007613 ORTHO05D009344 1.1e-47 193.4 127 72.4
Manes.01G219200 Manihot esculenta HOM05D007613 ORTHO05D009344 3.3e-47 191.8 127 73.2
Actinidia24821 Actinidia chinensis HOM05D007613 ORTHO05D009344 1.2e-46 189.9 123 73.2
Duzib133G0913 Durio zibethinus HOM05D007613 ORTHO05D009344 2.8e-46 188.7 129 68.2
QL12p028448 Quercus lobata HOM05D007613 ORTHO05D009344 3.6e-46 188.3 130 72.3
GSVIVG01028017001 Vitis vinifera HOM05D007613 ORTHO05D009344 4.0e-45 184.9 117 76.9
TPR.G33996 Trifolium pratense HOM05D007613 ORTHO05D009344 3.4e-44 181.8 127 70.1
Lj5g0017580 Lotus japonicus HOM05D007613 ORTHO05D009344 5.8e-44 181.0 131 67.9
MELO3C016000.2 Cucumis melo HOM05D007613 ORTHO05D009344 7.5e-44 180.6 129 66.7
CsaV3_7G029280 Cucumis sativus L. HOM05D007613 ORTHO05D009344 1.3e-43 179.9 129 65.9
TAR636G2501 Trochodendron aralioides HOM05D007613 ORTHO05D009344 1.7e-43 179.5 126 66.7
Psat6g165400 Pisum sativum HOM05D007613 ORTHO05D009344 2.9e-43 178.7 127 70.1
arahy.Tifrunner.gnm1.ann1.7MAL8N Arachis hypogaea HOM05D007613 ORTHO05D009344 8.3e-43 177.2 129 63.6
arahy.Tifrunner.gnm1.ann1.BW40YJ Arachis hypogaea HOM05D007613 ORTHO05D009344 8.3e-43 177.2 129 63.6
VMungo0720G1265 Vigna mungo HOM05D007613 ORTHO05D009344 8.3e-43 177.2 131 65.6
AT3G62880 Arabidopsis thaliana HOM05D007613 ORTHO05D009344 4.1e-42 174.9 127 63.8
Gohir.D12G134100 Gossypium hirsutum HOM05D007613 ORTHO05D009344 5.4e-42 174.5 130 65.4
Phvul.007G146700 Phaseolus vulgaris HOM05D007613 ORTHO05D009344 5.4e-42 174.5 131 64.1
vmacro15014 Vaccinium macrocarpon HOM05D007613 ORTHO05D009344 5.4e-42 174.5 133 62.4
Gorai.008G145100 Gossypium raimondii HOM05D007613 ORTHO05D009344 9.2e-42 173.7 130 64.6
Medtr1g088460 Medicago truncatula HOM05D007613 ORTHO05D009344 1.2e-41 173.3 127 67.7
AL5G45650 Arabidopsis lyrata HOM05D007613 ORTHO05D009344 1.6e-41 172.9 127 62.2
Prupe.8G261600 Prunus persica HOM05D007613 ORTHO05D009344 4.6e-41 171.4 128 64.8
Aa31LG10G16510 Aethionema arabicum HOM05D007613 ORTHO05D009344 6.0e-41 171.0 128 60.2
Thhalv10006304m.g Eutrema salsugineum HOM05D007613 ORTHO05D009344 7.8e-41 170.6 128 60.2
Sp5g00640 Schrenkiella parvula HOM05D007613 ORTHO05D009344 7.8e-41 170.6 128 60.9
MD03G1288400 Malus domestica HOM05D007613 ORTHO05D009344 1.0e-40 170.2 125 65.6
Atru.chr5.1146 Acer truncatum HOM05D007613 ORTHO05D009344 1.3e-40 169.9 129 64.3
Cpa.g.sc9.260 Carica papaya HOM05D000286 ORTHO05D000170 1.1e-39 166.8 108 73.1
Ca_10334_v3 Cicer arietinum L. HOM05D007613 ORTHO05D009344 1.9e-39 166.0 129 67.4
RcHm_v2.0_Chr6g0294031 Rosa chinensis HOM05D007613 ORTHO05D009344 1.2e-38 163.3 127 60.6
Solyc06g084550.3 Solanum lycopersicum HOM05D007613 ORTHO05D009344 1.2e-38 163.3 125 61.6
Sopen06g035930 Solanum pennellii HOM05D007613 ORTHO05D009344 1.6e-38 162.9 125 61.6
Lalb_Chr06g0166471 Lupinus albus HOM05D007613 ORTHO05D009344 2.8e-38 162.2 127 59.8
ECA248G1192 Erigeron canadensis HOM05D007613 ORTHO05D009344 3.6e-38 161.8 117 62.4
Lsat_1_v5_gn_5_191040 Lactuca sativa HOM05D007613 ORTHO05D009344 4.7e-38 161.4 117 60.7
Thecc.01G300700 Theobroma cacao HOM05D007613 ORTHO05D009344 4.7e-38 161.4 107 66.4
CARHR173140 Cardamine hirsuta HOM05D007613 ORTHO05D009344 8.0e-38 160.6 127 57.5
THA.LOC104798831 Tarenaya hassleriana HOM05D007613 ORTHO05D009344 1.1e-37 160.2 129 58.9
DCAR_018332 Daucus carota HOM05D007613 ORTHO05D009344 1.8e-37 159.5 123 62.6
PSO170G2016 Papaver somniferum HOM05D007613 ORTHO05D009344 1.8e-37 159.5 128 57.0
Peaxi162Scf00140g01222 Petunia axillaris HOM05D007613 ORTHO05D009344 1.8e-37 159.5 122 62.3
BraA04t15767Z Brassica rapa HOM05D007613 ORTHO05D009344 3.1e-37 158.7 122 59.8
HanXRQChr13g0413041 Helianthus annuus HOM05D007613 ORTHO05D009344 3.1e-37 158.7 120 59.2
Nitab4.5_0002820g0060 Nicotiana tabacum HOM05D007613 ORTHO05D009344 3.1e-37 158.7 127 61.4
EL10Ac7g17473 Beta vulgaris HOM05D007613 ORTHO05D009344 5.2e-37 157.9 120 65.0
Glyma.10G018300 Glycine max HOM05D007613 ORTHO05D009344 5.2e-37 157.9 131 61.1
BcaB02g08092 Brassica carinata HOM05D007613 ORTHO05D009344 8.9e-37 157.1 122 59.0
Nitab4.5_0019054g0010 Nicotiana tabacum HOM05D007613 ORTHO05D009344 8.9e-37 157.1 124 61.3
C04p30380 Brassica napus HOM05D007613 ORTHO05D009344 2.2e-35 152.5 122 59.0
BolC4t24569H Brassica oleracea HOM05D007613 ORTHO05D009344 2.2e-35 152.5 122 59.0
Lalb_Chr02g0146351 Lupinus albus HOM05D007613 ORTHO05D009344 3.7e-35 151.8 130 55.4
Migut.D00222 Erythranthe guttata HOM05D007613 ORTHO05D009344 8.3e-35 150.6 119 58.0
CDE08G0198 Ceratophyllum demersum HOM05D007613 ORTHO05D009344 2.4e-34 149.1 124 55.6
MSTRG.18147 Avicennia marina HOM05D007613 ORTHO05D009344 4.1e-34 148.3 118 57.6
TWI59G0030 Tripterygium wilfordii HOM05D007613 ORTHO05D009344 5.4e-34 147.9 123 56.9
CAN.G1209.25 Capsicum annuum HOM05D007613 ORTHO05D009344 3.5e-33 145.2 125 56.0
Oeu048336.2 Olea europaea HOM05D007613 ORTHO05D009344 1.0e-32 143.7 123 56.1
Ah.08g213430 Amaranthus hybridus HOM05D000286 ORTHO05D000170 1.3e-32 143.3 109 61.5
Hma1.2p1_0491F.1_g164570 Hydrangea macrophylla HOM05D007613 ORTHO05D009344 3.9e-32 141.7 124 56.5
Cc01_g20860 Coffea canephora HOM05D007613 ORTHO05D009344 1.1e-31 140.2 117 58.1
CSS0026666 Camellia sinensis var. sinensis HOM05D007613 ORTHO05D009344 7.3e-31 137.5 78 78.2
A04p00480 Brassica napus HOM05D007613 ORTHO05D009344 9.5e-31 137.1 106 59.4
FvH4_2g25740 Fragaria vesca HOM05D007613 ORTHO05D009344 3.6e-30 135.2 126 48.4
Haze_04939 Corylus avellana HOM05D007613 ORTHO05D009344 5.2e-29 131.3 111 63.1
FAN20G1450 Fragaria x ananassa HOM05D007613 ORTHO05D009344 2.6e-28 129.0 146 44.5
Nn3g21498 Nelumbo nucifera HOM05D007613 ORTHO05D009344 5.8e-28 127.9 80 71.2
Aqoxy2G02939 Aquilegia oxysepala HOM05D007613 ORTHO05D009344 1.3e-27 126.7 119 47.1
Sed0015913 Sechium edule HOM05D007613 ORTHO05D009344 1.7e-27 126.3 97 59.8
ClCG09G005860 Citrullus lanatus HOM05D007613 ORTHO05D009344 2.9e-27 125.6 134 53.0
COL.COLO4_23344 Corchorus olitorius HOM05D007613 ORTHO05D009344 1.4e-26 123.2 90 58.9
Migut.B01150 Erythranthe guttata HOM05D007613 ORTHO05D009344 5.4e-26 121.3 97 55.7
Sabra14G0095700 Salix brachista HOM05D007613 ORTHO05D009344 7.1e-26 120.9 127 55.1
FAN27G2766 Fragaria x ananassa HOM05D007613 ORTHO05D009344 1.3e-24 116.7 86 59.3
Rhsim01G0285300 Rhododendron simsii HOM05D007613 ORTHO05D009344 8.6e-24 114.0 97 55.7
ATR0706G141 Amborella trichopoda HOM05D007613 ORTHO05D009344 1.2e-22 110.2 123 43.9
PGSC0003DMG400024046 Solanum tuberosum HOM05D007613 ORTHO05D009344 1.6e-22 109.8 148 43.9
HanXRQChr13g0413071 Helianthus annuus HOM05D007613 ORTHO05D009344 8.9e-21 104.0 69 68.1
Pp3c19_22480 Physcomitrium patens HOM05D007613 ORTHO05D009344 4.9e-19 98.2 119 42.9
BcaC02g10319 Brassica carinata HOM05D007613 ORTHO05D009344 1.1e-18 97.1 78 59.0
Actinidia21047 Actinidia chinensis HOM05D007613 ORTHO05D009344 1.9e-18 96.3 57 77.2
SMO347G0100 Selaginella moellendorffii HOM05D007613 ORTHO05D009344 2.4e-18 95.9 96 46.9
AUR62008666 Chenopodium quinoa HOM05D007613 ORTHO05D009344 4.6e-17 91.7 77 58.4
Gohir.A12G130300 Gossypium hirsutum HOM05D007613 ORTHO05D009344 7.8e-17 90.9 130 44.6
MD11G1309700 Malus domestica HOM05D007613 ORTHO05D009344 3.9e-16 88.6 65 63.1
SalBow3G3757 Salvia bowleyana HOM05D007613 ORTHO05D009344 9.6e-15 84.0 60 58.3
SGA_v2.0_scaffold1G00364 Striga asiatica HOM05D001636 ORTHO05D003817 9.6e-15 84.0 69 53.6
Mapoly0048s0107 Marchantia polymorpha HOM05D007613 ORTHO05D009344 6.9e-13 77.8 96 39.6
SHI15147 Sapria himalayana HOM05D007613 ORTHO05D009344 9.0e-13 77.4 58 58.6
Cfa005911 Carpinus fangiana HOM05D007613 ORTHO05D009344 1.2e-12 77.0 145 42.1
Hund18170 Selenicereus undatus HOM05D007613 ORTHO05D009344 3.4e-12 75.5 68 55.9
FAN15G1907 Fragaria x ananassa HOM05D007613 ORTHO05D009344 2.4e-10 69.3 96 34.4
AagrBONN_evm.TU.Sc2ySwM_228.3892 Anthoceros agrestis HOM05D002174 ORTHO05D005941 2.1e-09 66.2 121 30.6
FAN24G3183 Fragaria x ananassa HOM05D007613 ORTHO05D009344 2.1e-09 66.2 64 42.2
AUR62033103 Chenopodium quinoa HOM05D007613 ORTHO05D009344 4.6e-09 65.1 120 35.8
Carub.0005s2952 Capsella rubella HOM05D001675 ORTHO05D001808 6.0e-09 64.7 46 58.7
FAN16G0236 Fragaria x ananassa HOM05D002174 ORTHO05D005941 1.1e-07 60.5 97 35.1
unitig_0.g668 Utricularia gibba HOM05D007613 ORTHO05D009344 1.1e-07 60.5 34 76.5
SEGI_11453 Sequoiadendron giganteum HOM05D002174 ORTHO05D005941 2.5e-07 59.3 121 30.6
vmacro14518 Vaccinium macrocarpon HOM05D002174 ORTHO05D005941 2.5e-07 59.3 118 31.4
CDE01G0513 Ceratophyllum demersum HOM05D002174 ORTHO05D005447 3.3e-07 58.9 119 31.9
SEGI_00670 Sequoiadendron giganteum HOM05D002174 ORTHO05D005941 3.3e-07 58.9 95 38.9
FAN21G2955 Fragaria x ananassa HOM05D002174 ORTHO05D005941 4.3e-07 58.5 95 34.7
FvH4_3g36080 Fragaria vesca HOM05D002174 ORTHO05D005941 7.3e-07 57.8 118 31.4
Sabra16G0144700 Salix brachista HOM05D002174 ORTHO05D005941 7.3e-07 57.8 95 32.6
Cfa009013 Carpinus fangiana HOM05D002174 ORTHO05D005941 1.6e-06 56.6 117 31.6
CSS0007494 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005941 3.6e-06 55.5 115 29.6
FAN25G1103 Fragaria x ananassa HOM05D002174 ORTHO05D005941 3.6e-06 55.5 95 32.6
AagrBONN_evm.TU.Sc2ySwM_362.1645 Anthoceros agrestis HOM05D002174 ORTHO05D005941 4.8e-06 55.1 73 34.2
TPR.G34319 Trifolium pratense HOM05D002174 ORTHO05D005941 6.2e-06 54.7 115 28.7
Os01g0303300 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005447 8.1e-06 54.3 139 30.9


User provided reference genes

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