Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G2453 Punica granatum HOM05D006058 ORTHO05D007686 6.0e-85 317.4 152 100.0
Eucgr.H01614 Eucalyptus grandis HOM05D006058 ORTHO05D007686 5.5e-62 241.1 139 82.0
CSS0022820 Camellia sinensis var. sinensis HOM05D006058 ORTHO05D007686 7.2e-62 240.7 140 82.1
Hma1.2p1_0399F.1_g144340 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 1.3e-60 236.5 139 80.6
Hma1.2p1_1049F.1_g251900 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 1.3e-60 236.5 139 80.6
vmacro02518 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.1e-59 233.4 140 80.0
Manes.07G087200 Manihot esculenta HOM05D006058 ORTHO05D007686 1.9e-59 232.6 137 80.3
Prupe.8G268000 Prunus persica HOM05D006058 ORTHO05D007686 3.3e-59 231.9 139 78.4
DCAR_018372 Daucus carota HOM05D006058 ORTHO05D007686 1.6e-58 229.6 140 77.9
RcHm_v2.0_Chr6g0292311 Rosa chinensis HOM05D006058 ORTHO05D007686 3.7e-58 228.4 136 77.2
Potri.014G083500 Populus trichocarpa HOM05D006058 ORTHO05D007686 6.3e-58 227.6 138 76.8
HanXRQChr03g0093951 Helianthus annuus HOM05D006058 ORTHO05D007686 2.4e-57 225.7 141 73.0
Oeu032852.1 Olea europaea HOM05D006058 ORTHO05D007686 2.4e-57 225.7 134 79.9
Sabra02G0198900 Salix brachista HOM05D006058 ORTHO05D007686 2.4e-57 225.7 138 76.1
Nitab4.5_0009592g0010 Nicotiana tabacum HOM05D006058 ORTHO05D007686 3.1e-57 225.3 137 78.1
FAN27G3183 Fragaria x ananassa HOM05D006058 ORTHO05D007686 5.3e-57 224.6 137 75.2
FvH4_2g24470 Fragaria vesca HOM05D006058 ORTHO05D007686 9.0e-57 223.8 136 75.7
FAN24G0575 Fragaria x ananassa HOM05D006058 ORTHO05D007686 9.0e-57 223.8 137 75.2
GSVIVG01011025001 Vitis vinifera HOM05D006058 ORTHO05D007686 9.0e-57 223.8 137 76.6
Nn4g26080 Nelumbo nucifera HOM05D006058 ORTHO05D007686 2.0e-56 222.6 137 74.5
Nitab4.5_0001499g0140 Nicotiana tabacum HOM05D006058 ORTHO05D007686 2.0e-56 222.6 137 77.4
MD04G1200100 Malus domestica HOM05D006058 ORTHO05D007686 2.6e-56 222.2 141 74.5
Peaxi162Scf00273g00034 Petunia axillaris HOM05D006058 ORTHO05D007686 3.4e-56 221.9 137 77.4
Psat4g228760 Pisum sativum HOM05D006058 ORTHO05D007686 3.4e-56 221.9 139 72.7
CANSAT25G3509 Cannabis sativa HOM05D006058 ORTHO05D007686 7.7e-56 220.7 133 74.4
Sc26g0003460 Simmondsia chinensis HOM05D006058 ORTHO05D007686 7.7e-56 220.7 137 74.5
Duzib211G0114 Durio zibethinus HOM05D006058 ORTHO05D007686 1.7e-55 219.5 136 75.0
TAR636G0052 Trochodendron aralioides HOM05D006058 ORTHO05D007686 1.7e-55 219.5 137 77.4
vmacro04594 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.7e-55 219.5 133 78.9
Ciclev10022776m.g Citrus clementina HOM05D006058 ORTHO05D007686 2.2e-55 219.2 138 73.2
MD12G1212600 Malus domestica HOM05D006058 ORTHO05D007686 2.2e-55 219.2 141 73.8
Nitab4.5_0004672g0030 Nicotiana tabacum HOM05D006058 ORTHO05D007686 2.2e-55 219.2 137 75.2
Lj2g0026207 Lotus japonicus HOM05D006058 ORTHO05D007686 5.0e-55 218.0 136 73.5
Ca_03230_v3 Cicer arietinum L. HOM05D006058 ORTHO05D007686 8.5e-55 217.2 139 71.9
Peaxi162Scf00026g00313 Petunia axillaris HOM05D006058 ORTHO05D007686 1.1e-54 216.9 137 77.4
TWI23G1093 Tripterygium wilfordii HOM05D006058 ORTHO05D007686 1.4e-54 216.5 140 75.0
Thecc.01G288100 Theobroma cacao HOM05D006058 ORTHO05D007686 2.5e-54 215.7 137 72.3
AUR62036672 Chenopodium quinoa HOM05D006058 ORTHO05D007686 3.2e-54 215.3 137 73.7
Hund02088 Selenicereus undatus HOM05D006058 ORTHO05D007686 7.2e-54 214.2 137 73.7
SGA_v2.0_scaffold130G34295 Striga asiatica HOM05D006058 ORTHO05D007686 9.4e-54 213.8 133 75.9
Lju470C11T9 Lonicera japonica HOM05D006058 ORTHO05D007686 1.6e-53 213.0 138 73.9
MBI07_g41269_MAGBIO Magnolia biondii HOM05D006058 ORTHO05D007686 4.6e-53 211.5 137 73.7
Atru.chr5.1299 Acer truncatum HOM05D006058 ORTHO05D007686 6.1e-53 211.1 138 72.5
Gohir.A12G007700 Gossypium hirsutum HOM05D006058 ORTHO05D007686 6.1e-53 211.1 137 70.1
HanXRQChr15g0476421 Helianthus annuus HOM05D006058 ORTHO05D007686 6.1e-53 211.1 141 71.6
Lalb_Chr07g0187491 Lupinus albus HOM05D006058 ORTHO05D007686 6.1e-53 211.1 137 73.0
PSO170G2912 Papaver somniferum HOM05D006058 ORTHO05D007686 6.1e-53 211.1 138 73.2
PSO407G0089 Papaver somniferum HOM05D006058 ORTHO05D007686 6.1e-53 211.1 138 73.2
Aqoxy4G03219 Aquilegia oxysepala HOM05D006058 ORTHO05D007686 7.9e-53 210.7 136 72.8
TPR.G16722 Trifolium pratense HOM05D006058 ORTHO05D007686 7.9e-53 210.7 139 69.8
Glyma.01G089000 Glycine max HOM05D006058 ORTHO05D007686 1.0e-52 210.3 136 70.6
Glyma.04G146600 Glycine max HOM05D006058 ORTHO05D007686 1.0e-52 210.3 136 70.6
TPR.G8807 Trifolium pratense HOM05D006058 ORTHO05D007686 1.4e-52 209.9 139 69.8
unitig_0.g1187 Utricularia gibba HOM05D006058 ORTHO05D007686 1.4e-52 209.9 134 70.9
QL12p042454 Quercus lobata HOM05D006058 ORTHO05D007686 1.8e-52 209.5 137 74.5
Cfa006057 Carpinus fangiana HOM05D006058 ORTHO05D007686 2.3e-52 209.1 137 73.0
CiPaw.07G098200 Carya illinoinensis HOM05D006058 ORTHO05D007686 2.3e-52 209.1 137 74.5
COL.COLO4_08051 Corchorus olitorius HOM05D006058 ORTHO05D007686 2.3e-52 209.1 137 71.5
Ah.10g033440 Amaranthus hybridus HOM05D006058 ORTHO05D007686 3.0e-52 208.8 137 72.3
Medtr3g010210 Medicago truncatula HOM05D006058 ORTHO05D007686 3.0e-52 208.8 151 65.6
Cc01_g20070 Coffea canephora HOM05D006058 ORTHO05D007686 5.1e-52 208.0 143 69.2
Actinidia00707 Actinidia chinensis HOM05D006058 ORTHO05D007686 6.7e-52 207.6 120 81.7
Prupe.3G123100 Prunus persica HOM05D006058 ORTHO05D007686 8.8e-52 207.2 139 74.1
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 8.8e-52 207.2 120 81.7
Gohir.D12G007100 Gossypium hirsutum HOM05D006058 ORTHO05D007686 1.5e-51 206.5 137 67.9
MELO3C015303.2 Cucumis melo HOM05D006058 ORTHO05D007686 2.0e-51 206.1 140 69.3
TPR.G22635 Trifolium pratense HOM05D006058 ORTHO05D007686 2.0e-51 206.1 139 68.3
SalBow3G0902 Salvia bowleyana HOM05D006058 ORTHO05D007686 3.3e-51 205.3 133 69.9
CsaV3_1G038790 Cucumis sativus L. HOM05D006058 ORTHO05D007686 5.7e-51 204.5 138 69.6
Gorai.008G007300 Gossypium raimondii HOM05D006058 ORTHO05D007686 7.4e-51 204.1 134 67.9
BcaB02g09737 Brassica carinata HOM05D006058 ORTHO05D007686 2.2e-50 202.6 136 68.4
Phvul.002G050500 Phaseolus vulgaris HOM05D006058 ORTHO05D007686 3.7e-50 201.8 137 67.9
AL8G40840 Arabidopsis lyrata HOM05D006058 ORTHO05D007686 1.1e-49 200.3 137 67.2
AT5G63690 Arabidopsis thaliana HOM05D006058 ORTHO05D007686 1.4e-49 199.9 137 65.7
CDE02G3716 Ceratophyllum demersum HOM05D006058 ORTHO05D007686 1.4e-49 199.9 136 66.9
Hund29081 Selenicereus undatus HOM05D006058 ORTHO05D007686 3.1e-49 198.7 129 72.9
Hund29083 Selenicereus undatus HOM05D006058 ORTHO05D007686 3.1e-49 198.7 129 72.9
BcaC03g18221 Brassica carinata HOM05D006058 ORTHO05D007686 4.1e-49 198.4 137 66.4
BraA06t25979Z Brassica rapa HOM05D006058 ORTHO05D007686 4.1e-49 198.4 135 67.4
SHI14488 Sapria himalayana HOM05D006058 ORTHO05D007686 4.1e-49 198.4 140 67.9
Aa31LG10G11090 Aethionema arabicum HOM05D006058 ORTHO05D007686 9.1e-49 197.2 135 67.4
BolC2t12363H Brassica oleracea HOM05D006058 ORTHO05D007686 9.1e-49 197.2 137 66.4
Sp2g26790 Schrenkiella parvula HOM05D006058 ORTHO05D007686 9.1e-49 197.2 136 67.6
CARHR277600 Cardamine hirsuta HOM05D006058 ORTHO05D007686 1.5e-48 196.4 133 66.2
Prupe.8G250400 Prunus persica HOM05D006058 ORTHO05D007686 2.0e-48 196.1 105 83.8
BcaC01g02630 Brassica carinata HOM05D006058 ORTHO05D007686 3.4e-48 195.3 137 65.7
C03p62750 Brassica napus HOM05D006058 ORTHO05D007686 3.4e-48 195.3 137 65.7
Carub.0008s2446 Capsella rubella HOM05D006058 ORTHO05D007686 4.5e-48 194.9 138 65.2
Solyc12g014020.2 Solanum lycopersicum HOM05D006058 ORTHO05D007686 5.9e-48 194.5 125 76.8
Sopen12g005770 Solanum pennellii HOM05D006058 ORTHO05D007686 5.9e-48 194.5 125 76.8
BolC3t18529H Brassica oleracea HOM05D006058 ORTHO05D007686 1.0e-47 193.7 137 65.0
BcaB07g29701 Brassica carinata HOM05D006058 ORTHO05D007686 2.2e-47 192.6 137 65.0
C02p62900 Brassica napus HOM05D006058 ORTHO05D007686 2.2e-47 192.6 137 65.0
Thhalv10005102m.g Eutrema salsugineum HOM05D006058 ORTHO05D007686 2.2e-47 192.6 135 66.7
A06p30300 Brassica napus HOM05D006058 ORTHO05D007686 2.9e-47 192.2 135 64.4
PGSC0003DMG400015370 Solanum tuberosum HOM05D006058 ORTHO05D007686 3.8e-47 191.8 125 76.0
A02p42950 Brassica napus HOM05D006058 ORTHO05D007686 8.5e-47 190.7 137 64.2
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 2.5e-46 189.1 118 74.6
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 5.5e-46 188.0 118 74.6
Eucgr.H01617 Eucalyptus grandis HOM05D006058 ORTHO05D007686 5.5e-46 188.0 139 66.2
THA.LOC104826323 Tarenaya hassleriana HOM05D006058 ORTHO05D007686 5.5e-46 188.0 135 65.2
SEGI_21939 Sequoiadendron giganteum HOM05D006058 ORTHO05D007686 1.2e-45 186.8 140 58.6
Manes.10G061700 Manihot esculenta HOM05D006058 ORTHO05D007686 2.1e-45 186.0 129 69.8
Migut.D00240 Erythranthe guttata HOM05D006058 ORTHO05D007686 6.1e-45 184.5 142 64.8
ECA240G0292 Erigeron canadensis HOM05D006058 ORTHO05D007686 1.0e-44 183.7 125 70.4
BraA02t09218Z Brassica rapa HOM05D006058 ORTHO05D007686 1.4e-44 183.3 132 63.6
HPP92_016068 Vanilla planifolia HOM05D006058 ORTHO05D007686 1.8e-44 183.0 136 62.5
Zm00001eb106990 Zea mays HOM05D006058 ORTHO05D007686 3.9e-44 181.8 138 61.6
Nn3g21231 Nelumbo nucifera HOM05D006058 ORTHO05D007686 1.1e-43 180.3 117 73.5
EL10Ac7g17168 Beta vulgaris HOM05D006058 ORTHO05D007686 1.7e-42 176.4 148 58.8
ClCG03G017360 Citrullus lanatus HOM05D006058 ORTHO05D007686 5.3e-41 171.4 107 72.9
VMungo1215G3318 Vigna mungo HOM05D006058 ORTHO05D007686 2.0e-40 169.5 117 66.7
CAN.G964.10 Capsicum annuum HOM05D006058 ORTHO05D007686 1.7e-39 166.4 131 63.4
Sed0020474 Sechium edule HOM05D006058 ORTHO05D007686 5.0e-39 164.9 107 70.1
ATR0225G019 Amborella trichopoda HOM05D006058 ORTHO05D007686 1.4e-36 156.8 121 62.8
SMO244G0033 Selaginella moellendorffii HOM05D006058 ORTHO05D007686 1.8e-36 156.4 122 56.6
Mapoly0068s0046 Marchantia polymorpha HOM05D006058 ORTHO05D007686 5.2e-36 154.8 113 59.3
AagrBONN_evm.TU.Sc2ySwM_369.269 Anthoceros agrestis HOM05D006058 ORTHO05D007686 4.4e-35 151.8 120 53.3
CBR_g26410 Chara braunii HOM05D006058 ORTHO05D007686 4.4e-35 151.8 123 55.3
Mapoly0122s0023 Marchantia polymorpha HOM05D006058 ORTHO05D007686 7.5e-35 151.0 118 55.1
Pp3c3_34830 Physcomitrium patens HOM05D006058 ORTHO05D007686 2.0e-32 142.9 127 52.0
AUR62034597 Chenopodium quinoa HOM05D006058 ORTHO05D007686 2.7e-32 142.5 96 71.9
BolC4t22707H Brassica oleracea HOM05D006058 ORTHO05D007686 1.0e-31 140.6 106 57.5
EL10Ac3g06921 Beta vulgaris HOM05D006058 ORTHO05D007686 6.5e-31 137.9 93 69.9
TAR365G0318 Trochodendron aralioides HOM05D006058 ORTHO05D007686 1.1e-30 137.1 82 75.6
CBR_g24266 Chara braunii HOM05D006058 ORTHO05D007686 5.2e-28 128.3 117 49.6
Aa31LG1G18150 Aethionema arabicum HOM05D000706 ORTHO05D001554 8.8e-28 127.5 85 65.9
Sc05g0004330 Simmondsia chinensis HOM05D006058 ORTHO05D007686 8.8e-28 127.5 87 67.8
MBI07_g41268_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 2.4e-25 119.4 90 64.4
vmacro09159 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 3.8e-15 85.5 71 57.7
QL12p023442 Quercus lobata HOM05D006058 ORTHO05D007686 6.6e-15 84.7 89 50.6
CAN.G27.69 Capsicum annuum HOM05D005779 ORTHO05D007040 4.6e-08 62.0 44 68.2
CsaV3_7G018800 Cucumis sativus L. HOM05D006058 ORTHO05D000001 3.3e-06 55.8 60 46.7


User provided reference genes

Program Settings