Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 8.2e-174 613.6 308 100.0
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 8.1e-121 437.6 308 74.7
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 2.6e-119 432.6 307 73.9
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 5.6e-114 414.8 310 69.7
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 7.3e-114 414.5 308 71.1
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 1.2e-113 413.7 313 68.7
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 1.8e-112 409.8 308 69.5
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 3.1e-112 409.1 309 70.6
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 6.9e-112 407.9 308 71.1
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 6.9e-112 407.9 308 69.5
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 1.2e-111 407.1 309 69.9
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 3.2e-109 399.1 311 70.1
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 3.2e-109 399.1 364 62.1
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 1.2e-108 397.1 324 67.0
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 1.0e-107 394.0 319 65.5
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 1.3e-107 393.7 310 69.7
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 1.7e-107 393.3 327 65.1
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 1.7e-107 393.3 309 67.0
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 3.9e-107 392.1 309 67.3
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 3.9e-107 392.1 309 67.3
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 6.6e-107 391.3 309 66.7
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 1.1e-106 390.6 288 69.8
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 5.6e-106 388.3 221 82.8
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 5.6e-106 388.3 224 81.7
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 6.2e-105 384.8 268 73.9
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 1.1e-104 384.0 310 66.8
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 1.8e-104 383.3 308 66.6
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 2.4e-104 382.9 227 81.1
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 2.4e-104 382.9 229 81.2
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 4.0e-104 382.1 355 60.6
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 4.0e-104 382.1 308 66.2
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 4.0e-104 382.1 227 80.6
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 6.9e-104 381.3 395 54.7
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 9.0e-104 380.9 298 67.1
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 9.0e-104 380.9 312 66.0
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 1.2e-103 380.6 310 66.1
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 2.6e-103 379.4 309 66.3
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 3.4e-103 379.0 283 68.9
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 7.6e-103 377.9 317 64.7
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 7.6e-103 377.9 257 72.8
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 3.8e-102 375.6 314 65.0
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 8.4e-102 374.4 345 61.2
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 1.1e-101 374.0 296 67.9
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 1.9e-101 373.2 238 76.5
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 7.1e-101 371.3 302 65.9
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 7.1e-101 371.3 318 66.0
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 9.3e-101 370.9 226 77.4
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 1.2e-100 370.5 320 64.7
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 2.1e-100 369.8 218 81.7
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 2.7e-100 369.4 295 67.1
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 3.5e-100 369.0 232 79.3
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 3.5e-100 369.0 309 64.4
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 1.3e-99 367.1 260 71.2
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 1.3e-99 367.1 224 77.7
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 2.3e-99 366.3 252 71.8
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 2.3e-99 366.3 304 65.8
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 3.9e-99 365.5 282 67.0
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 1.1e-98 364.0 316 62.7
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 1.1e-98 364.0 299 66.9
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 1.1e-98 364.0 221 78.7
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 4.3e-98 362.1 223 76.2
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 5.6e-98 361.7 281 69.0
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 7.4e-98 361.3 313 62.0
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 9.6e-98 360.9 220 78.2
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 1.3e-97 360.5 307 66.1
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 1.8e-96 356.7 247 70.9
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 4.0e-96 355.5 201 83.1
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 9.9e-95 350.9 211 79.1
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.3e-94 350.5 231 71.9
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 1.7e-94 350.1 220 75.0
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 1.7e-94 350.1 312 63.8
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 2.4e-93 346.3 296 64.2
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 9.3e-93 344.4 227 72.2
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 2.7e-92 342.8 319 59.9
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 5.1e-91 338.6 272 64.3
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 5.6e-90 335.1 313 58.8
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 2.1e-89 333.2 217 75.6
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 6.2e-89 331.6 273 63.4
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 1.4e-88 330.5 312 59.9
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 1.4e-88 330.5 268 67.5
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 1.8e-88 330.1 312 58.7
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 1.8e-88 330.1 312 58.7
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 4.0e-88 328.9 312 60.6
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 5.3e-88 328.6 311 60.8
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 4.5e-87 325.5 313 59.1
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 4.5e-87 325.5 314 59.2
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 2.2e-86 323.2 312 58.3
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 6.5e-86 321.6 314 58.0
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 1.4e-85 320.5 312 57.4
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 5.5e-85 318.5 278 61.5
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 7.1e-85 318.2 313 58.1
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 4.6e-84 315.5 314 57.0
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 4.6e-84 315.5 313 56.9
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 2.3e-83 313.2 301 57.8
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 3.9e-83 312.4 182 79.7
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 1.3e-81 307.4 309 57.0
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 1.3e-81 307.4 259 63.3
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 1.1e-80 304.3 337 52.2
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 5.3e-80 302.0 304 57.6
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 5.0e-78 295.4 229 64.2
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 6.1e-76 288.5 224 62.5
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 1.5e-74 283.9 151 88.1
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 1.5e-74 283.9 286 54.5
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 2.4e-72 276.6 229 59.0
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 9.1e-72 274.6 179 72.6
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 3.4e-71 272.7 231 68.4
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 4.2e-69 265.8 151 80.8
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 2.3e-67 260.0 248 54.0
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 1.7e-65 253.8 231 64.9
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 8.2e-65 251.5 143 81.8
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 4.4e-58 229.2 196 61.7
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 7.7e-55 218.4 138 73.2
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 8.5e-54 214.9 169 65.1
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 3.2e-53 213.0 140 73.6
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 3.5e-47 193.0 141 69.5
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 5.9e-39 165.6 146 59.6
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 3.3e-37 159.8 177 40.1
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 7.5e-34 148.7 152 58.6
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 3.1e-32 143.3 198 38.9
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 4.1e-24 116.3 68 82.4
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 8.3e-17 92.0 137 42.3
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 1.7e-09 67.8 36 83.3
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 1.4e-08 64.7 102 41.2
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 5.4e-08 62.8 101 33.7
MD03G1195100 Malus domestica HOM05D004980 ORTHO05D006505 1.6e-07 61.2 101 33.7
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 2.1e-07 60.8 96 38.5
LjContig00272g0012473 Lotus japonicus HOM05D004980 ORTHO05D006505 2.7e-07 60.5 123 31.7
CSS0002819 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 4.6e-07 59.7 122 30.3
Ca_06343_v3 Cicer arietinum L. HOM05D004980 ORTHO05D006505 4.6e-07 59.7 128 28.9
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 6.0e-07 59.3 100 32.0
Sabra16G0233900 Salix brachista HOM05D004980 ORTHO05D006505 1.0e-06 58.5 132 28.8
Cpa.g.sc12.256 Carica papaya HOM05D004980 ORTHO05D006505 1.3e-06 58.2 101 32.7
Manes.03G132700 Manihot esculenta HOM05D004980 ORTHO05D006505 1.3e-06 58.2 101 30.7
TAR624G0219 Trochodendron aralioides HOM05D004980 ORTHO05D006505 1.3e-06 58.2 101 30.7
Psat2g012600 Pisum sativum HOM05D004980 ORTHO05D006505 1.7e-06 57.8 126 27.8
Prupe.4G221100 Prunus persica HOM05D004980 ORTHO05D006505 2.3e-06 57.4 101 31.7
Eucgr.F00711 Eucalyptus grandis HOM05D004980 ORTHO05D006505 3.0e-06 57.0 95 33.7
Medtr5g093580 Medicago truncatula HOM05D004980 ORTHO05D006505 3.0e-06 57.0 128 27.3
Sed0026676 Sechium edule HOM05D004980 ORTHO05D006505 3.0e-06 57.0 102 31.4
arahy.Tifrunner.gnm1.ann1.45FXM1 Arachis hypogaea HOM05D004980 ORTHO05D006505 5.1e-06 56.2 101 30.7
CsaV3_3G004900 Cucumis sativus L. HOM05D004980 ORTHO05D006505 5.1e-06 56.2 98 29.6
TPR.G1188 Trifolium pratense HOM05D004980 ORTHO05D006505 5.1e-06 56.2 127 26.8
VMungo0647G0060 Vigna mungo HOM05D004980 ORTHO05D006505 5.1e-06 56.2 126 27.8
Actinidia05071 Actinidia chinensis HOM05D004980 ORTHO05D006505 6.6e-06 55.8 98 30.6
ClCG10G005220 Citrullus lanatus HOM05D004980 ORTHO05D006505 6.6e-06 55.8 106 29.2
Dinv40789 Davidia involucrata HOM05D004980 ORTHO05D006505 6.6e-06 55.8 101 28.7
HanXRQChr05g0159781 Helianthus annuus HOM05D004980 ORTHO05D006505 6.6e-06 55.8 101 31.7
FAN16G1125 Fragaria x ananassa HOM05D004980 ORTHO05D006505 8.6e-06 55.5 101 33.7
Lalb_Chr17g0348661 Lupinus albus HOM05D004980 ORTHO05D006505 8.6e-06 55.5 102 30.4
TAR626G1444 Trochodendron aralioides HOM05D004980 ORTHO05D006505 8.6e-06 55.5 101 29.7


User provided reference genes

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