Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G2323 Punica granatum HOM05D007267 ORTHO05D009053 9.3e-90 333.6 174 100.0
Thecc.09G267200 Theobroma cacao HOM05D007267 ORTHO05D009053 4.0e-32 142.1 126 62.7
COL.COLO4_25353 Corchorus olitorius HOM05D007267 ORTHO05D009053 6.8e-32 141.4 128 63.3
Hma1.2p1_0218F.1_g092330 Hydrangea macrophylla HOM05D007267 ORTHO05D009053 1.5e-31 140.2 76 86.8
RcHm_v2.0_Chr5g0049391 Rosa chinensis HOM05D007267 ORTHO05D009053 2.6e-31 139.4 127 62.2
Haze_02482 Corylus avellana HOM05D007267 ORTHO05D009053 3.4e-31 139.0 126 61.1
Rhsim01G0198000 Rhododendron simsii HOM05D007267 ORTHO05D009053 4.4e-31 138.7 161 55.3
QL03p058144 Quercus lobata HOM05D007267 ORTHO05D009053 5.7e-31 138.3 78 85.9
Cfa019700 Carpinus fangiana HOM05D007267 ORTHO05D009053 7.5e-31 137.9 130 58.5
Cfa019701 Carpinus fangiana HOM05D007267 ORTHO05D009053 7.5e-31 137.9 130 58.5
MSTRG.12404 Avicennia marina HOM05D007267 ORTHO05D009053 9.8e-31 137.5 114 61.4
Eucgr.J00600 Eucalyptus grandis HOM05D007267 ORTHO05D009053 9.8e-31 137.5 127 63.0
HanXRQChr09g0268081 Helianthus annuus HOM05D007267 ORTHO05D009053 9.8e-31 137.5 126 59.5
Ciclev10029598m.g Citrus clementina HOM05D007267 ORTHO05D009053 1.3e-30 137.1 128 59.4
FAN21G3895 Fragaria x ananassa HOM05D007267 ORTHO05D009053 1.3e-30 137.1 128 59.4
Medtr3g079820 Medicago truncatula HOM05D007267 ORTHO05D009053 1.3e-30 137.1 122 60.7
EL10Ac7g16252 Beta vulgaris HOM05D007267 ORTHO05D009053 2.8e-30 136.0 137 59.1
FAN16G2508 Fragaria x ananassa HOM05D007267 ORTHO05D009053 2.8e-30 136.0 128 58.6
CiPaw.13G125300 Carya illinoinensis HOM05D007267 ORTHO05D009053 3.7e-30 135.6 135 57.8
Glyma.02G102300 Glycine max HOM05D007267 ORTHO05D009053 4.8e-30 135.2 132 59.8
Gorai.007G016000 Gossypium raimondii HOM05D007267 ORTHO05D009053 4.8e-30 135.2 87 77.0
Lj6g0001809 Lotus japonicus HOM05D007267 ORTHO05D009053 4.8e-30 135.2 122 59.8
SalBow3G2700 Salvia bowleyana HOM05D007267 ORTHO05D009053 4.8e-30 135.2 128 59.4
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 8.3e-30 134.4 72 87.5
Cpa.g.sc103.55 Carica papaya HOM05D007267 ORTHO05D009053 8.3e-30 134.4 72 87.5
ClCG02G024060 Citrullus lanatus HOM05D007267 ORTHO05D009053 8.3e-30 134.4 118 60.2
FvH4_3g26950 Fragaria vesca HOM05D007267 ORTHO05D009053 8.3e-30 134.4 128 57.8
Actinidia22464 Actinidia chinensis HOM05D007267 ORTHO05D009053 1.1e-29 134.0 75 84.0
Duzib170G0076 Durio zibethinus HOM05D007267 ORTHO05D009053 1.1e-29 134.0 130 61.5
Lalb_Chr17g0347461 Lupinus albus HOM05D007267 ORTHO05D009053 1.1e-29 134.0 139 56.8
Psat5g107600 Pisum sativum HOM05D007267 ORTHO05D009053 1.1e-29 134.0 121 59.5
Prupe.6G149700 Prunus persica HOM05D007267 ORTHO05D009053 1.1e-29 134.0 133 61.7
MD03G1161500 Malus domestica HOM05D007267 ORTHO05D009053 1.4e-29 133.7 129 58.9
Potri.009G155300 Populus trichocarpa HOM05D007267 ORTHO05D009053 1.4e-29 133.7 132 58.3
TPR.G15594 Trifolium pratense HOM05D007267 ORTHO05D009053 1.4e-29 133.7 130 58.5
vmacro14300 Vaccinium macrocarpon HOM05D007267 ORTHO05D009053 1.4e-29 133.7 75 84.0
Dinv32141 Davidia involucrata HOM05D007267 ORTHO05D009053 1.8e-29 133.3 135 57.8
Gohir.D11G012400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 1.8e-29 133.3 87 75.9
Ah.15g099120 Amaranthus hybridus HOM05D007267 ORTHO05D009053 2.4e-29 132.9 102 67.6
Manes.11G104200 Manihot esculenta HOM05D007267 ORTHO05D009053 3.1e-29 132.5 139 56.8
Solyc01g009245.1 Solanum lycopersicum HOM05D007267 ORTHO05D009053 3.1e-29 132.5 81 76.5
GSVIVG01037512001 Vitis vinifera HOM05D007267 ORTHO05D009053 3.1e-29 132.5 124 58.9
Aa31LG1G13830 Aethionema arabicum HOM05D007267 ORTHO05D009053 4.1e-29 132.1 72 80.6
Migut.N02428 Erythranthe guttata HOM05D007267 ORTHO05D009053 4.1e-29 132.1 72 84.7
FAN25G2009 Fragaria x ananassa HOM05D007267 ORTHO05D009053 4.1e-29 132.1 128 57.8
CANSAT54G0135 Cannabis sativa HOM05D007267 ORTHO05D009053 5.4e-29 131.7 72 80.6
Glyma.07G213600 Glycine max HOM05D007267 ORTHO05D009053 5.4e-29 131.7 131 58.8
arahy.Tifrunner.gnm1.ann1.NLVX9W Arachis hypogaea HOM05D007267 ORTHO05D009053 7.0e-29 131.3 99 66.7
arahy.Tifrunner.gnm1.ann1.YII7CZ Arachis hypogaea HOM05D007267 ORTHO05D009053 7.0e-29 131.3 99 66.7
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 7.0e-29 131.3 90 73.3
MELO3C014688.2 Cucumis melo HOM05D007267 ORTHO05D009053 7.0e-29 131.3 113 60.2
CsaV3_4G023270 Cucumis sativus L. HOM05D007267 ORTHO05D009053 9.1e-29 131.0 126 59.5
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 1.2e-28 130.6 137 54.7
PGSC0003DMG400013132 Solanum tuberosum HOM05D007267 ORTHO05D009053 1.2e-28 130.6 96 65.6
Cc05_g03630 Coffea canephora HOM05D007267 ORTHO05D009053 1.6e-28 130.2 69 88.4
Sopen01g004730 Solanum pennellii HOM05D007267 ORTHO05D009053 2.0e-28 129.8 76 78.9
Lsat_1_v5_gn_4_124761 Lactuca sativa HOM05D007267 ORTHO05D009053 2.7e-28 129.4 75 80.0
Atru.chr3.3040 Acer truncatum HOM05D007267 ORTHO05D009053 3.5e-28 129.0 125 60.0
AL6G32500 Arabidopsis lyrata HOM05D007267 ORTHO05D009053 3.5e-28 129.0 74 78.4
AT5G20935 Arabidopsis thaliana HOM05D007267 ORTHO05D009053 3.5e-28 129.0 74 78.4
TWI31G1096 Tripterygium wilfordii HOM05D007267 ORTHO05D009053 3.5e-28 129.0 72 83.3
Peaxi162Scf00345g00617 Petunia axillaris HOM05D007267 ORTHO05D009053 5.9e-28 128.3 124 59.7
C02p10530 Brassica napus HOM05D007267 ORTHO05D009053 7.7e-28 127.9 77 72.7
BraA02t05605Z Brassica rapa HOM05D007267 ORTHO05D009053 7.7e-28 127.9 77 72.7
CARHR191910 Cardamine hirsuta HOM05D007267 ORTHO05D009053 7.7e-28 127.9 73 78.1
Phvul.006G014400 Phaseolus vulgaris HOM05D007267 ORTHO05D009053 1.0e-27 127.5 123 56.1
Thhalv10015046m.g Eutrema salsugineum HOM05D007267 ORTHO05D009053 1.3e-27 127.1 85 69.4
BcaC03g13815 Brassica carinata HOM05D007267 ORTHO05D009053 1.7e-27 126.7 77 72.7
BolC2t07084H Brassica oleracea HOM05D007267 ORTHO05D009053 1.7e-27 126.7 77 72.7
THA.LOC104799596 Tarenaya hassleriana HOM05D007267 ORTHO05D009053 1.7e-27 126.7 107 58.9
TAR623G0997 Trochodendron aralioides HOM05D007267 ORTHO05D009053 1.7e-27 126.7 74 79.7
Carub.0006s1925 Capsella rubella HOM05D007267 ORTHO05D009053 2.3e-27 126.3 123 57.7
BcaB05g22800 Brassica carinata HOM05D007267 ORTHO05D009053 2.9e-27 125.9 84 69.0
BcaNung05756 Brassica carinata HOM05D007267 ORTHO05D009053 2.9e-27 125.9 72 77.8
A03p10350 Brassica napus HOM05D007267 ORTHO05D009053 2.9e-27 125.9 72 77.8
C03p11890 Brassica napus HOM05D007267 ORTHO05D009053 2.9e-27 125.9 72 77.8
Aqoxy2G00618 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 3.8e-27 125.6 91 68.1
CAN.G226.32 Capsicum annuum HOM05D007267 ORTHO05D009053 3.8e-27 125.6 72 80.6
Nitab4.5_0001504g0080 Nicotiana tabacum HOM05D007267 ORTHO05D009053 3.8e-27 125.6 72 80.6
BolC3t13659H Brassica oleracea HOM05D007267 ORTHO05D009053 5.0e-27 125.2 121 57.0
BraA03t10347Z Brassica rapa HOM05D007267 ORTHO05D009053 5.0e-27 125.2 72 77.8
Nn2g14465 Nelumbo nucifera HOM05D007267 ORTHO05D009053 1.1e-26 124.0 73 78.1
PSO339G2642 Papaver somniferum HOM05D007267 ORTHO05D009053 2.5e-26 122.9 87 66.7
PSO384G0574 Papaver somniferum HOM05D007267 ORTHO05D009053 2.5e-26 122.9 87 66.7
Zm00001eb015220 Zea mays HOM05D007267 ORTHO05D009053 2.5e-26 122.9 104 56.7
Duzib168G1484 Durio zibethinus HOM05D007267 ORTHO05D009053 5.5e-26 121.7 92 69.6
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 9.5e-26 120.9 142 51.4
Gohir.A11G015400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 9.5e-26 120.9 76 80.3
unitig_8.g2981 Utricularia gibba HOM05D007267 ORTHO05D009053 9.5e-26 120.9 71 78.9
VMungo0540G2312 Vigna mungo HOM05D007267 ORTHO05D009053 1.2e-25 120.6 129 53.5
FAN11G1992 Fragaria x ananassa HOM05D007267 ORTHO05D009053 3.6e-25 119.0 128 53.9
Sed0001981 Sechium edule HOM05D007267 ORTHO05D009053 3.6e-25 119.0 122 57.4
SEGI_22571 Sequoiadendron giganteum HOM05D007267 ORTHO05D009053 5.2e-24 115.2 89 61.8
ATR0697G260 Amborella trichopoda HOM05D007267 ORTHO05D009053 4.4e-23 112.1 123 52.0
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 7.5e-23 111.3 113 54.0
arahy.Tifrunner.gnm1.ann1.SB69IV Arachis hypogaea HOM05D007267 ORTHO05D009053 9.8e-23 110.9 109 56.9
AagrBONN_evm.TU.Sc2ySwM_117.833 Anthoceros agrestis HOM05D007267 ORTHO05D009053 1.3e-22 110.5 86 53.5
Sed0001742 Sechium edule HOM05D007267 ORTHO05D009053 2.2e-22 109.8 70 77.1
Aqoxy51s004 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 3.5e-20 102.4 56 83.9
ECA232G2859 Erigeron canadensis HOM05D000436 ORTHO05D008174 3.8e-19 99.0 105 57.1
Pp3c3_19300 Physcomitrium patens HOM05D007267 ORTHO05D009053 1.9e-18 96.7 69 58.0
Mapoly0146s0012 Marchantia polymorpha HOM05D007267 ORTHO05D009053 5.6e-18 95.1 68 63.2
SMO367G0148 Selaginella moellendorffii HOM05D007267 ORTHO05D009053 1.2e-17 94.0 64 64.1
Medtr3g079783 Medicago truncatula HOM05D000005 ORTHO05D000294 1.8e-16 90.1 71 66.2
CBR_g51378 Chara braunii HOM05D007267 ORTHO05D009053 6.8e-16 88.2 70 51.4
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 2.8e-09 66.2 128 39.1
MBI11_g25049_MAGBIO Magnolia biondii HOM05D007267 ORTHO05D009053 3.6e-09 65.9 38 73.7
Nitab4.5_0000157g0140 Nicotiana tabacum HOM05D007267 ORTHO05D009053 1.8e-08 63.5 36 77.8
Os07g0164200 Oryza sativa ssp. japonica HOM05D007267 ORTHO05D009053 4.0e-08 62.4 68 47.1
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 5.2e-08 62.0 127 38.6
arahy.Tifrunner.gnm1.ann1.RKVJ8T Arachis hypogaea HOM05D007267 ORTHO05D009053 8.9e-08 61.2 32 87.5
Lsat_1_v5_gn_5_53160 Lactuca sativa HOM05D007267 ORTHO05D009053 2.6e-07 59.7 39 71.8
Lsat_1_v5_gn_6_53880 Lactuca sativa HOM05D007267 ORTHO05D009053 7.5e-07 58.2 40 70.0
Gorai.006G118000 Gossypium raimondii HOM05D007267 ORTHO05D009053 1.7e-06 57.0 41 65.9
Gohir.D09G100550 Gossypium hirsutum HOM05D007267 ORTHO05D009053 8.3e-06 54.7 42 64.3


User provided reference genes

Program Settings