Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 4.1e-83 311.6 191 100.0
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 4.1e-83 311.6 191 100.0
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 6.9e-54 214.5 190 64.7
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 9.0e-54 214.2 190 63.2
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 5.8e-53 211.5 212 67.9
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.7e-52 209.9 189 63.5
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 1.9e-51 206.5 191 74.9
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 3.5e-50 202.2 202 64.4
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 3.5e-50 202.2 195 56.4
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.0e-49 200.7 184 63.0
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 1.3e-49 200.3 199 66.3
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.8e-49 199.9 189 64.6
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.8e-49 199.9 202 67.8
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 2.3e-49 199.5 212 66.0
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 3.9e-49 198.7 194 70.1
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 5.1e-49 198.4 183 65.0
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 6.7e-49 198.0 189 65.6
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.5e-48 196.1 192 64.1
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.3e-47 193.7 211 58.8
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.3e-47 193.7 218 58.3
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.8e-47 192.6 196 58.7
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 3.7e-47 192.2 215 62.8
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 4.8e-47 191.8 189 60.8
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 6.3e-47 191.4 191 61.8
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 8.2e-47 191.0 204 67.2
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 1.4e-46 190.3 194 55.2
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 1.8e-46 189.9 205 64.9
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 3.1e-46 189.1 198 68.2
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 3.1e-46 189.1 199 68.3
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 6.9e-46 188.0 216 63.4
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.2e-45 187.2 196 54.1
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 1.2e-45 187.2 224 51.8
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 1.5e-45 186.8 195 65.6
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 2.6e-45 186.0 188 57.4
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 3.4e-45 185.7 195 63.1
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 4.5e-45 185.3 200 64.0
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 4.5e-45 185.3 212 63.7
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 7.6e-45 184.5 202 66.8
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.0e-44 184.1 202 64.4
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.3e-44 183.7 203 63.5
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.7e-44 183.3 242 57.9
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 6.5e-44 181.4 198 65.2
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 6.5e-44 181.4 224 55.8
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 8.5e-44 181.0 197 51.8
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.1e-43 180.6 191 59.7
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 1.9e-43 179.9 211 57.8
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 4.2e-43 178.7 193 49.2
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 5.5e-43 178.3 200 59.0
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 1.2e-42 177.2 226 58.0
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.6e-42 176.8 199 52.3
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 2.1e-42 176.4 243 48.6
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 3.6e-42 175.6 199 55.3
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 4.6e-42 175.3 193 52.8
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.0e-41 174.1 197 54.3
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.3e-41 173.7 194 58.2
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 1.8e-41 173.3 202 53.0
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 2.3e-41 172.9 200 62.5
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 2.3e-41 172.9 195 66.7
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 1.5e-40 170.2 196 64.3
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.9e-40 169.9 231 57.1
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 3.3e-40 169.1 208 59.6
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 4.3e-40 168.7 206 55.3
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 7.4e-40 167.9 194 63.9
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 7.4e-40 167.9 190 51.6
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 7.4e-40 167.9 206 61.2
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 9.7e-40 167.5 187 52.9
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 9.7e-40 167.5 193 54.9
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 1.3e-39 167.2 210 51.0
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.6e-39 166.8 192 60.4
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 2.2e-39 166.4 206 51.9
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 2.2e-39 166.4 209 50.2
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 3.7e-39 165.6 207 61.8
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 3.7e-39 165.6 190 60.5
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.1e-38 164.1 193 51.8
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 3.1e-38 162.5 197 60.9
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.1e-38 162.5 202 47.5
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 6.9e-38 161.4 194 59.8
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 6.9e-38 161.4 197 63.5
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 9.1e-38 161.0 185 54.1
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.2e-37 160.6 199 64.3
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.2e-37 160.6 200 61.5
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 2.0e-37 159.8 204 60.8
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 2.6e-37 159.5 205 53.2
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 7.7e-37 157.9 200 56.0
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 7.7e-37 157.9 194 59.3
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 1.0e-36 157.5 202 47.0
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.0e-36 157.5 195 53.8
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 1.1e-35 154.1 209 45.9
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.4e-35 153.7 224 59.4
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 1.9e-35 153.3 212 42.9
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 2.5e-35 152.9 202 57.4
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 2.5e-35 152.9 237 50.2
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 5.5e-35 151.8 204 57.8
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 5.5e-35 151.8 218 41.3
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 9.4e-35 151.0 188 60.6
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 3.6e-34 149.1 217 45.2
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 3.6e-34 149.1 205 53.7
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 3.6e-34 149.1 201 51.2
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 6.1e-34 148.3 209 56.0
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 6.1e-34 148.3 209 56.0
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 7.9e-34 147.9 203 56.2
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 7.9e-34 147.9 202 54.0
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.0e-33 147.5 184 59.8
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 1.4e-33 147.1 185 54.1
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.8e-33 146.7 193 53.4
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 2.3e-33 146.4 187 54.5
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 3.0e-33 146.0 235 53.2
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 3.9e-33 145.6 191 52.9
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 3.9e-33 145.6 205 53.7
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 3.9e-33 145.6 204 52.9
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 8.8e-33 144.4 185 54.1
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 8.8e-33 144.4 195 62.6
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-32 144.1 188 56.4
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 4.4e-32 142.1 178 54.5
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 5.7e-32 141.7 216 41.2
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 9.7e-32 141.0 193 52.3
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.3e-31 140.6 215 51.2
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 3.7e-31 139.0 211 55.9
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 4.8e-31 138.7 191 49.2
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-30 137.5 212 41.0
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 1.1e-30 137.5 185 45.4
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 1.4e-30 137.1 193 42.5
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 2.4e-30 136.3 218 50.5
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.4e-30 136.3 134 58.2
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 9.1e-30 134.4 195 51.8
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 9.1e-30 134.4 186 51.6
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 1.2e-29 134.0 222 51.8
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.2e-29 134.0 206 57.8
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 2.6e-29 132.9 216 50.9
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 3.4e-29 132.5 185 43.8
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 4.5e-29 132.1 201 52.7
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 4.5e-29 132.1 182 46.7
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 7.7e-29 131.3 183 46.4
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 1.0e-28 131.0 201 52.2
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.7e-28 130.2 186 43.0
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 2.2e-28 129.8 182 41.8
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 2.2e-28 129.8 182 41.8
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 2.2e-28 129.8 185 44.3
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 2.9e-28 129.4 171 45.0
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 8.5e-28 127.9 182 40.1
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 1.9e-27 126.7 185 43.2
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 3.2e-27 125.9 199 43.2
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 4.2e-27 125.6 185 43.8
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.2e-26 124.0 190 51.1
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.2e-26 124.0 219 54.3
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.6e-26 123.6 198 48.0
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 4.7e-26 122.1 185 43.2
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.4e-25 120.6 185 51.4
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.1e-24 117.5 185 45.9
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 2.0e-24 116.7 154 45.5
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-23 114.0 182 39.6
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-23 114.0 182 39.6
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 1.3e-23 114.0 182 39.6
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.2e-23 113.2 220 39.1
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 4.8e-23 112.1 183 39.3
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 5.3e-22 108.6 104 64.4
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 4.5e-21 105.5 149 53.0
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 4.5e-21 105.5 149 53.0
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 5.9e-21 105.1 149 53.7
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 5.9e-21 105.1 149 53.7
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.2e-16 90.9 215 40.5
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.5e-16 90.5 196 46.9
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.0e-16 90.1 196 46.4
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.0e-16 90.1 196 46.9
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 5.7e-16 88.6 149 49.0
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 8.2e-15 84.7 116 41.4
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.8e-14 83.6 218 35.3
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 7.0e-14 81.6 216 36.1
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 9.1e-14 81.3 105 49.5
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 2.1e-10 70.1 187 29.9
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 6.1e-10 68.6 42 64.3
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.8e-09 67.0 38 68.4
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 6.8e-09 65.1 149 32.9
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 2.0e-08 63.5 145 30.3
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.4e-08 62.8 149 28.9
Lalb_Chr22g0349911 Lupinus albus HOM05D003968 ORTHO05D004077 2.2e-07 60.1 71 54.9
Mapoly0029s0076 Marchantia polymorpha HOM05D013579 ORTHO05D015305 3.7e-07 59.3 58 46.6
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 4.8e-07 58.9 63 49.2
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 1.4e-06 57.4 27 85.2
SMO347G0048 Selaginella moellendorffii HOM05D022619 ORTHO05D026045 1.4e-06 57.4 157 23.6
SEGI_14851 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 1.8e-06 57.0 149 29.5
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 1.8e-06 57.0 133 27.8
Ca_06512_v3 Cicer arietinum L. HOM05D003968 ORTHO05D004077 4.1e-06 55.8 95 45.3
SEGI_09126 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 5.4e-06 55.5 149 29.5
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 7.0e-06 55.1 62 45.2
Pp3c1_28820 Physcomitrium patens HOM05D013579 ORTHO05D003690 9.1e-06 54.7 65 43.1


User provided reference genes

Program Settings