Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G2181 Punica granatum HOM05D003497 ORTHO05D003964 1.3e-120 436.4 215 100.0
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 1.9e-36 156.8 217 50.2
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 3.6e-35 152.5 151 57.6
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 2.0e-25 120.2 92 66.3
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 2.6e-25 119.8 218 42.2
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 4.9e-24 115.5 219 41.1
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 2.3e-21 106.7 208 37.0
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 1.5e-20 104.0 156 41.0
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 7.3e-20 101.7 212 36.3
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.3e-19 100.9 205 35.1
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.3e-19 100.9 207 36.2
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 2.1e-19 100.1 162 40.1
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 4.8e-19 99.0 153 39.2
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 6.2e-19 98.6 153 41.8
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 8.1e-19 98.2 222 35.1
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 1.8e-18 97.1 157 35.7
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.8e-18 97.1 212 35.4
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 4.0e-18 95.9 178 39.9
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 5.3e-18 95.5 154 39.6
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 5.3e-18 95.5 132 43.9
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 9.0e-18 94.7 196 35.7
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 1.2e-17 94.4 149 40.3
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.6e-17 93.2 178 36.0
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 3.4e-17 92.8 162 39.5
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 3.4e-17 92.8 207 35.7
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 4.5e-17 92.4 196 35.2
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 4.5e-17 92.4 165 38.8
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 4.5e-17 92.4 216 34.3
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 5.8e-17 92.0 167 37.1
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 9.9e-17 91.3 203 37.9
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 9.9e-17 91.3 167 37.1
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 9.9e-17 91.3 163 38.7
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 1.3e-16 90.9 213 35.7
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 1.3e-16 90.9 203 36.0
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 1.7e-16 90.5 157 36.9
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 1.7e-16 90.5 198 34.3
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 2.2e-16 90.1 157 38.9
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.2e-16 90.1 163 38.7
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 2.2e-16 90.1 147 39.5
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 2.9e-16 89.7 132 42.4
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 2.9e-16 89.7 151 39.1
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 3.8e-16 89.4 135 41.5
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 4.9e-16 89.0 157 37.6
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 4.9e-16 89.0 137 40.9
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 4.9e-16 89.0 135 41.5
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 6.4e-16 88.6 189 33.3
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 6.4e-16 88.6 136 39.0
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 6.4e-16 88.6 130 41.5
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 6.4e-16 88.6 147 38.8
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 8.4e-16 88.2 141 39.7
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 8.4e-16 88.2 129 42.6
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 1.1e-15 87.8 161 36.6
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 1.4e-15 87.4 160 38.1
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.4e-15 87.4 197 34.0
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 1.4e-15 87.4 134 41.0
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.9e-15 87.0 197 33.0
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 2.4e-15 86.7 143 39.9
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 2.4e-15 86.7 173 37.6
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 2.4e-15 86.7 230 33.5
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 3.2e-15 86.3 141 39.0
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 3.2e-15 86.3 142 39.4
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 4.2e-15 85.9 169 37.9
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 5.4e-15 85.5 157 34.4
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 7.1e-15 85.1 210 30.5
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 7.1e-15 85.1 173 35.8
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 9.3e-15 84.7 148 36.5
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 9.3e-15 84.7 205 30.7
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 1.2e-14 84.3 189 34.4
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.6e-14 84.0 193 35.2
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.6e-14 84.0 195 34.9
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.6e-14 84.0 195 34.9
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 1.6e-14 84.0 205 29.3
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 2.1e-14 83.6 156 36.5
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 2.7e-14 83.2 149 37.6
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 2.7e-14 83.2 151 37.1
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 4.6e-14 82.4 202 31.2
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 4.6e-14 82.4 152 36.2
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 6.0e-14 82.0 168 33.9
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 6.0e-14 82.0 222 33.3
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 7.9e-14 81.6 119 41.2
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 7.9e-14 81.6 171 33.9
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 1.0e-13 81.3 176 35.2
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 1.0e-13 81.3 201 29.9
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.0e-13 81.3 195 34.4
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.0e-13 81.3 99 48.5
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 1.3e-13 80.9 152 35.5
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.3e-13 80.9 221 33.0
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.3e-13 80.9 192 32.8
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.3e-13 80.9 192 32.8
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 2.3e-13 80.1 152 36.2
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 2.3e-13 80.1 140 36.4
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 2.3e-13 80.1 123 41.5
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 2.3e-13 80.1 171 32.7
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 3.0e-13 79.7 152 35.5
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 3.9e-13 79.3 155 35.5
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 5.1e-13 79.0 143 38.5
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 5.1e-13 79.0 91 49.5
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 5.1e-13 79.0 121 41.3
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 6.7e-13 78.6 121 38.0
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 1.1e-12 77.8 172 33.1
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 1.5e-12 77.4 155 36.1
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 1.5e-12 77.4 206 33.0
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 1.5e-12 77.4 151 37.1
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 2.5e-12 76.6 193 33.2
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 3.3e-12 76.3 152 34.9
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 4.3e-12 75.9 98 38.8
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 5.6e-12 75.5 159 33.3
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 5.6e-12 75.5 98 39.8
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 7.4e-12 75.1 138 34.8
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 1.3e-11 74.3 122 36.1
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 1.3e-11 74.3 156 35.9
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 2.8e-11 73.2 144 35.4
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 4.8e-11 72.4 128 33.6
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 4.8e-11 72.4 99 40.4
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 6.2e-11 72.0 112 38.4
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 6.2e-11 72.0 85 50.6
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 8.1e-11 71.6 148 33.8
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 8.1e-11 71.6 152 36.2
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 1.1e-10 71.2 98 38.8
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.4e-10 70.9 128 32.8
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.8e-10 70.5 146 32.9
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.8e-10 70.5 171 29.8
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 1.8e-10 70.5 108 38.0
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 2.4e-10 70.1 105 44.8
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 3.1e-10 69.7 244 28.3
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 3.1e-10 69.7 147 33.3
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 4.0e-10 69.3 105 42.9
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 6.9e-10 68.6 89 42.7
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 9.0e-10 68.2 131 32.8
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 9.0e-10 68.2 153 30.7
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 9.0e-10 68.2 149 34.9
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 2.0e-09 67.0 194 31.4
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 2.6e-09 66.6 176 29.5
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 2.6e-09 66.6 76 48.7
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 4.5e-09 65.9 152 33.6
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 4.5e-09 65.9 137 30.7
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 4.5e-09 65.9 150 32.7
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 5.8e-09 65.5 133 30.1
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 5.8e-09 65.5 194 30.9
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 7.6e-09 65.1 96 40.6
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 7.6e-09 65.1 171 31.0
HanXRQChr10g0290271 Helianthus annuus HOM05D003497 ORTHO05D003964 9.9e-09 64.7 83 41.0
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 9.9e-09 64.7 102 37.3
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 2.9e-08 63.2 104 36.5
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 2.9e-08 63.2 79 40.5
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 3.8e-08 62.8 159 30.8
MD10G1175800 Malus domestica HOM05D003497 ORTHO05D003964 4.9e-08 62.4 121 34.7
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 4.9e-08 62.4 138 29.7
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 6.4e-08 62.0 112 34.8
Migut.B00467 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.1e-07 61.2 100 35.0
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 1.1e-07 61.2 169 31.4
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 3.2e-07 59.7 112 32.1
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 4.2e-07 59.3 118 34.7
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 4.2e-07 59.3 137 29.2
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 4.2e-07 59.3 104 39.4
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.6e-06 57.4 142 31.0
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 2.7e-06 56.6 132 31.8


User provided reference genes

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