Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 1.4e-63 246.1 122 100.0
PGR031G0924 Punica granatum HOM05D007325 ORTHO05D009251 2.3e-18 95.9 107 53.3
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 3.0e-18 95.5 109 54.1
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 3.3e-17 92.0 121 48.8
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 1.6e-16 89.7 100 52.0
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 1.6e-16 89.7 94 59.6
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 2.1e-16 89.4 102 48.0
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 2.8e-16 89.0 120 47.5
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 1.1e-15 87.0 118 55.1
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 1.1e-15 87.0 97 52.6
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 2.4e-15 85.9 110 48.2
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 4.0e-15 85.1 111 50.5
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 5.3e-15 84.7 95 56.8
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 6.9e-15 84.3 95 56.8
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 2.0e-14 82.8 97 50.5
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 2.6e-14 82.4 116 45.7
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 2.6e-14 82.4 113 45.1
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 5.8e-14 81.3 95 55.8
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 9.9e-14 80.5 112 51.8
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 1.7e-13 79.7 74 59.5
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 2.9e-13 79.0 88 55.7
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 6.4e-13 77.8 80 58.8
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 1.1e-12 77.0 87 54.0
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 2.4e-12 75.9 109 48.6
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 4.2e-12 75.1 71 63.4
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 7.1e-12 74.3 134 39.6
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 9.3e-12 73.9 109 45.9
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 9.3e-12 73.9 116 43.1
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 1.2e-11 73.6 71 57.7
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 1.2e-11 73.6 115 44.3
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 2.1e-11 72.8 94 48.9
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 4.6e-11 71.6 77 54.5
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 7.9e-11 70.9 103 45.6
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 7.9e-11 70.9 62 64.5
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 1.0e-10 70.5 89 53.9
Medtr7g111170 Medicago truncatula HOM05D007325 ORTHO05D009251 1.3e-10 70.1 97 47.4
SGA_v2.0_scaffold131G34452 Striga asiatica HOM05D007325 ORTHO05D009251 1.3e-10 70.1 79 54.4
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 2.3e-10 69.3 98 46.9
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 2.3e-10 69.3 79 51.9
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 3.9e-10 68.6 74 56.8
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 5.1e-10 68.2 70 60.0
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 5.1e-10 68.2 80 51.2
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 5.1e-10 68.2 85 47.1
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 6.7e-10 67.8 100 45.0
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 6.7e-10 67.8 88 52.3
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 8.7e-10 67.4 58 56.9
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 8.7e-10 67.4 87 54.0
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 8.7e-10 67.4 94 48.9
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 1.1e-09 67.0 94 48.9
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 1.5e-09 66.6 120 44.2
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 1.5e-09 66.6 99 48.5
Medtr7g111180 Medicago truncatula HOM05D007325 ORTHO05D009251 1.5e-09 66.6 90 46.7
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 1.9e-09 66.2 103 45.6
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 2.5e-09 65.9 82 52.4
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 2.5e-09 65.9 82 52.4
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 2.5e-09 65.9 82 52.4
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 2.5e-09 65.9 69 56.5
TWI14G0425 Tripterygium wilfordii HOM05D007325 ORTHO05D009251 2.5e-09 65.9 77 55.8
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 5.6e-09 64.7 84 44.0
TPR.G8391 Trifolium pratense HOM05D007325 ORTHO05D009251 5.6e-09 64.7 99 43.4
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 7.4e-09 64.3 88 47.7
TAR365G1009 Trochodendron aralioides HOM05D007325 ORTHO05D009251 9.6e-09 63.9 107 43.0
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 1.3e-08 63.5 77 50.6
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 3.7e-08 62.0 89 47.2
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 3.7e-08 62.0 84 47.6
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 4.8e-08 61.6 118 39.8
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 6.2e-08 61.2 87 47.1
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 6.2e-08 61.2 87 47.1
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 6.2e-08 61.2 87 47.1
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 8.1e-08 60.8 44 72.7
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 1.1e-07 60.5 44 72.7
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 1.1e-07 60.5 76 48.7
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 1.8e-07 59.7 76 46.1
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 1.8e-07 59.7 84 46.4
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 4.0e-07 58.5 71 53.5
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 5.3e-07 58.2 82 47.6
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 5.3e-07 58.2 44 68.2
Psat0s4029g0040 Pisum sativum HOM05D007325 ORTHO05D009251 6.9e-07 57.8 94 42.6
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 1.2e-06 57.0 87 47.1
BcaC05g30077 Brassica carinata HOM05D007325 ORTHO05D009251 1.5e-06 56.6 105 41.9
C05p61330 Brassica napus HOM05D007325 ORTHO05D009251 1.5e-06 56.6 105 41.9
BolC5t34792H Brassica oleracea HOM05D007325 ORTHO05D009251 1.5e-06 56.6 105 41.9
AT5G26731 Arabidopsis thaliana HOM05D007325 ORTHO05D009251 2.0e-06 56.2 108 40.7
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 2.0e-06 56.2 84 47.6
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 2.0e-06 56.2 50 60.0
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 3.4e-06 55.5 101 42.6
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 4.5e-06 55.1 46 60.9
Lalb_Chr15g0077801 Lupinus albus HOM05D007325 ORTHO05D009251 5.8e-06 54.7 89 42.7
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 7.6e-06 54.3 94 41.5


User provided reference genes

Program Settings