Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 4.7e-190 667.9 391 100.0
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 3.2e-82 309.7 391 57.0
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 1.6e-81 307.4 403 56.8
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 2.4e-77 293.5 392 57.7
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 5.3e-77 292.4 401 54.6
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 9.1e-77 291.6 401 53.6
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 1.6e-76 290.8 389 56.8
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 2.0e-76 290.4 398 57.8
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 2.6e-76 290.0 390 52.1
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 4.5e-76 289.3 396 54.8
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 1.3e-75 287.7 401 53.1
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 3.8e-75 286.2 392 51.8
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 5.0e-75 285.8 392 57.7
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 5.0e-75 285.8 418 51.7
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 8.5e-75 285.0 391 56.5
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 1.9e-74 283.9 392 53.1
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 1.9e-74 283.9 390 54.6
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 3.2e-74 283.1 393 53.7
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 3.2e-74 283.1 403 57.3
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 4.2e-74 282.7 390 50.5
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.7e-73 280.0 400 53.2
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.6e-73 279.6 390 52.6
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 6.1e-73 278.9 390 56.2
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 8.0e-73 278.5 382 53.4
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.5e-71 274.2 388 54.1
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 2.6e-71 273.5 389 51.9
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 4.4e-71 272.7 387 53.7
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 7.5e-71 271.9 384 50.0
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 3.7e-70 269.6 397 51.4
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.7e-70 269.6 380 54.2
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 1.4e-69 267.7 386 51.0
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.8e-69 267.3 384 49.0
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 3.5e-68 263.1 391 50.9
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 4.5e-68 262.7 389 56.3
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 1.0e-67 261.5 411 47.9
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 1.0e-67 261.5 382 56.8
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 1.3e-67 261.2 389 52.2
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 2.9e-67 260.0 390 49.2
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 2.9e-67 260.0 353 56.7
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 3.8e-67 259.6 399 48.1
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 3.8e-67 259.6 389 52.7
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 1.1e-66 258.1 387 51.7
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 7.2e-66 255.4 388 47.9
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 7.2e-66 255.4 383 47.3
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 9.4e-66 255.0 400 50.2
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 2.1e-65 253.8 406 53.0
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 6.1e-65 252.3 400 51.8
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 1.8e-64 250.8 390 47.9
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 2.3e-64 250.4 398 52.3
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 4.0e-64 249.6 394 51.8
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 5.2e-64 249.2 392 51.3
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 6.8e-64 248.8 396 52.3
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.5e-63 247.7 392 51.8
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 4.4e-63 246.1 389 49.4
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 1.3e-62 244.6 405 50.1
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.7e-62 244.2 463 45.6
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.8e-62 243.4 388 47.9
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 3.7e-62 243.0 383 48.8
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 8.3e-62 241.9 407 50.6
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 3.1e-61 240.0 390 52.1
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 5.4e-61 239.2 406 46.8
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 1.2e-60 238.0 399 51.6
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 4.5e-60 236.1 383 50.1
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 4.5e-60 236.1 391 49.6
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 5.9e-60 235.7 386 51.0
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 1.3e-59 234.6 390 43.3
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 1.7e-59 234.2 395 45.8
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 3.8e-59 233.0 402 46.8
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 6.5e-59 232.3 398 45.5
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.1e-58 231.5 385 52.2
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 1.5e-58 231.1 380 53.2
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 1.5e-58 231.1 384 49.2
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.9e-58 230.7 306 54.9
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.9e-58 230.7 394 42.6
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 1.2e-57 228.0 396 47.2
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.6e-57 227.6 390 46.9
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 8.0e-57 225.3 394 47.0
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 1.8e-56 224.2 392 46.7
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.0e-56 223.4 390 46.9
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 4.0e-56 223.0 291 58.8
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.5e-55 221.1 410 44.9
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 2.0e-55 220.7 386 45.3
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 7.5e-55 218.8 384 49.2
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.3e-54 218.0 386 49.5
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.9e-54 216.1 386 49.2
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 4.9e-54 216.1 387 44.2
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 8.3e-54 215.3 386 49.7
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 1.4e-53 214.5 349 48.7
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 1.8e-53 214.2 265 55.1
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 3.5e-52 209.9 391 49.6
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 4.5e-52 209.5 336 52.4
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.3e-51 207.2 390 50.3
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 1.1e-50 204.9 353 45.0
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.5e-50 204.5 384 40.1
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 1.9e-50 204.1 354 53.7
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 2.5e-50 203.8 405 48.9
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 4.3e-50 203.0 367 43.6
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.3e-50 202.2 457 41.1
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 1.4e-48 198.0 354 45.5
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 1.8e-48 197.6 354 48.3
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 6.8e-48 195.7 394 48.2
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.4e-47 193.4 464 39.7
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.5e-47 192.2 325 46.2
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 9.8e-47 191.8 389 48.8
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 9.8e-47 191.8 390 41.0
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 2.2e-46 190.7 384 39.8
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 4.9e-46 189.5 389 48.8
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 8.3e-46 188.7 398 46.0
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 1.4e-45 188.0 396 42.4
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.8e-45 187.6 325 45.2
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 2.4e-45 187.2 394 48.2
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.3e-43 181.4 469 39.2
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 3.0e-43 180.3 363 45.2
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 8.6e-43 178.7 382 47.9
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 4.3e-42 176.4 400 47.0
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 7.3e-42 175.6 389 38.0
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 9.5e-42 175.3 192 59.4
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.6e-41 174.5 385 39.5
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 1.6e-41 174.5 390 42.8
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 1.6e-41 174.5 391 43.2
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 6.8e-40 169.1 344 38.7
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 8.9e-40 168.7 363 39.4
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 9.8e-39 165.2 397 36.0
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 1.3e-38 164.9 236 53.0
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 9.2e-37 158.7 345 39.4
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 1.2e-36 158.3 390 41.8
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 6.0e-36 156.0 349 37.0
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.7e-35 154.5 391 37.1
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.3e-35 154.1 397 34.8
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 6.6e-35 152.5 298 40.3
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 5.6e-34 149.4 365 40.0
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 2.8e-33 147.1 342 38.9
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 1.8e-32 144.4 404 37.9
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 8.9e-32 142.1 388 36.1
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 8.9e-32 142.1 374 37.4
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 4.4e-31 139.8 380 39.7
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.2e-30 137.5 273 42.9
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 2.2e-30 137.5 390 34.1
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 6.4e-30 136.0 352 38.4
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 1.4e-29 134.8 403 35.7
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.9e-29 134.4 295 39.0
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 9.2e-29 132.1 366 35.2
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.2e-28 131.7 283 41.3
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 1.6e-28 131.3 354 39.5
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.7e-27 127.9 296 38.2
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 6.6e-27 125.9 360 34.7
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 6.6e-27 125.9 360 34.7
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.1e-26 125.2 264 42.0
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 1.9e-26 124.4 277 44.8
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 7.3e-26 122.5 134 60.4
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 7.3e-26 122.5 355 41.4
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 1.2e-25 121.7 296 37.2
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 1.6e-25 121.3 142 54.9
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.1e-25 120.9 222 45.9
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 4.7e-25 119.8 229 46.7
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 4.7e-25 119.8 229 46.7
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 1.1e-24 118.6 223 44.4
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 5.2e-24 116.3 221 46.2
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 8.9e-24 115.5 221 45.7
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 8.9e-24 115.5 221 45.7
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 4.4e-23 113.2 266 41.4
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 1.1e-21 108.6 225 43.1
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 4.1e-21 106.7 230 40.4
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 9.2e-21 105.5 224 41.5
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 9.2e-21 105.5 339 40.7
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 9.2e-21 105.5 339 40.7
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.9e-19 100.1 218 43.6
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 5.2e-16 89.7 219 39.3
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 6.9e-16 89.4 208 37.0
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 2.1e-12 77.8 369 34.7
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.0e-11 75.5 320 30.6
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.8e-09 67.4 63 57.1
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 6.2e-09 66.2 63 55.6
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 3.4e-07 60.5 327 29.1


User provided reference genes

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