Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1778 Punica granatum HOM05D007631 ORTHO05D009566 1.8e-159 565.8 281 100.0
Eucgr.J00853 Eucalyptus grandis HOM05D007631 ORTHO05D009566 1.1e-71 274.2 253 60.1
TWI53G1419 Tripterygium wilfordii HOM05D007631 ORTHO05D009566 8.6e-69 264.6 190 68.4
Potri.005G094700 Populus trichocarpa HOM05D007631 ORTHO05D009566 4.2e-68 262.3 210 61.4
CiPaw.09G164100 Carya illinoinensis HOM05D007631 ORTHO05D009566 5.5e-68 261.9 189 69.3
Gohir.A03G110300 Gossypium hirsutum HOM05D007631 ORTHO05D009566 4.0e-66 255.8 184 66.8
Manes.04G066700 Manihot esculenta HOM05D007631 ORTHO05D009566 4.0e-66 255.8 190 67.9
Duzib268G1119 Durio zibethinus HOM05D007631 ORTHO05D009566 8.9e-66 254.6 188 65.4
Gohir.D02G134900 Gossypium hirsutum HOM05D007631 ORTHO05D009566 1.2e-65 254.2 184 66.8
CsaV3_3G031500 Cucumis sativus L. HOM05D007631 ORTHO05D009566 2.0e-65 253.4 211 60.7
Ciclev10032529m.g Citrus clementina HOM05D007631 ORTHO05D009566 2.2e-64 250.0 189 64.0
MELO3C024033.2 Cucumis melo HOM05D007631 ORTHO05D009566 3.7e-64 249.2 192 63.5
CsaV3_3G032520 Cucumis sativus L. HOM05D007631 ORTHO05D009566 6.3e-64 248.4 254 53.1
ClCG10G011860 Citrullus lanatus HOM05D007631 ORTHO05D009566 2.4e-63 246.5 190 63.2
CAN.G157.15 Capsicum annuum HOM05D007631 ORTHO05D009566 2.9e-61 239.6 191 58.1
Hma1.2p1_0499F.1_g166830 Hydrangea macrophylla HOM05D007631 ORTHO05D009566 3.8e-61 239.2 184 62.5
FAN12G2650 Fragaria x ananassa HOM05D007631 ORTHO05D009566 1.5e-60 237.3 203 59.6
Nn4g24939 Nelumbo nucifera HOM05D007631 ORTHO05D009566 2.5e-60 236.5 188 62.8
CANSAT64G0359 Cannabis sativa HOM05D007631 ORTHO05D009566 5.6e-60 235.3 237 52.3
AUR62015208 Chenopodium quinoa HOM05D007631 ORTHO05D009566 7.3e-60 235.0 189 57.1
Glyma.11G102300 Glycine max HOM05D007631 ORTHO05D009566 6.1e-59 231.9 200 58.0
Lj3g0001232 Lotus japonicus HOM05D007631 ORTHO05D009566 1.0e-58 231.1 199 58.8
Cc11_g05090 Coffea canephora HOM05D007631 ORTHO05D009566 1.4e-58 230.7 190 57.9
PGSC0003DMG400029978 Solanum tuberosum HOM05D007631 ORTHO05D009566 2.3e-58 229.9 193 56.5
EL10Ac9g22926 Beta vulgaris HOM05D007631 ORTHO05D009566 6.8e-58 228.4 225 52.0
FAN07G2143 Fragaria x ananassa HOM05D007631 ORTHO05D009566 8.9e-58 228.0 212 57.1
Sp3g17810 Schrenkiella parvula HOM05D007631 ORTHO05D009566 1.2e-57 227.6 196 59.2
Lsat_1_v5_gn_3_33601 Lactuca sativa HOM05D007631 ORTHO05D009566 2.0e-57 226.9 191 60.7
MD16G1250700 Malus domestica HOM05D007631 ORTHO05D009566 2.0e-57 226.9 216 52.8
Carub.0003s1968 Capsella rubella HOM05D007631 ORTHO05D009566 3.4e-57 226.1 254 50.8
AT3G19800 Arabidopsis thaliana HOM05D007631 ORTHO05D009566 4.4e-57 225.7 190 58.9
Lalb_Chr03g0024841 Lupinus albus HOM05D007631 ORTHO05D009566 5.7e-57 225.3 208 54.8
ECA246G0740 Erigeron canadensis HOM05D007631 ORTHO05D009566 7.5e-57 224.9 191 58.6
Thhalv10021444m.g Eutrema salsugineum HOM05D007631 ORTHO05D009566 7.5e-57 224.9 189 58.2
Sopen02g009160 Solanum pennellii HOM05D007631 ORTHO05D009566 9.8e-57 224.6 194 56.2
Solyc02g055440.4 Solanum lycopersicum HOM05D007631 ORTHO05D009566 1.3e-56 224.2 194 56.2
AL3G33250 Arabidopsis lyrata HOM05D007631 ORTHO05D009566 2.9e-56 223.0 190 58.4
PSO478G5292 Papaver somniferum HOM05D007631 ORTHO05D009566 2.9e-56 223.0 194 55.7
A01p34940 Brassica napus HOM05D007631 ORTHO05D009566 4.9e-56 222.2 190 56.3
BraA01t03577Z Brassica rapa HOM05D007631 ORTHO05D009566 4.9e-56 222.2 190 56.3
C01p44350 Brassica napus HOM05D007631 ORTHO05D009566 6.4e-56 221.9 190 56.3
BolC1t04400H Brassica oleracea HOM05D007631 ORTHO05D009566 6.4e-56 221.9 190 56.3
VMungo1127G1566 Vigna mungo HOM05D007631 ORTHO05D009566 6.4e-56 221.9 190 57.4
Aa31LG8G6570 Aethionema arabicum HOM05D007631 ORTHO05D009566 8.3e-56 221.5 209 56.5
Medtr4g074590 Medicago truncatula HOM05D007631 ORTHO05D009566 1.6e-54 217.2 190 55.3
SalBow6G3201 Salvia bowleyana HOM05D007631 ORTHO05D009566 1.7e-53 213.8 190 54.2
GSVIVG01010153001 Vitis vinifera HOM05D007631 ORTHO05D009566 5.0e-53 212.2 203 56.7
CARHR095310 Cardamine hirsuta HOM05D007631 ORTHO05D009566 2.5e-52 209.9 196 56.6
COL.COLO4_27670 Corchorus olitorius HOM05D007631 ORTHO05D009566 1.6e-51 207.2 192 58.3
Nitab4.5_0002392g0040 Nicotiana tabacum HOM05D007631 ORTHO05D009566 1.6e-51 207.2 191 53.4
HanXRQChr17g0540801 Helianthus annuus HOM05D007631 ORTHO05D009566 1.4e-50 204.1 165 60.0
Dinv17601 Davidia involucrata HOM05D007631 ORTHO05D009566 1.8e-50 203.8 191 52.9
TPR.G32328 Trifolium pratense HOM05D007631 ORTHO05D009566 2.6e-49 199.9 214 49.5
PSO017G5087 Papaver somniferum HOM05D007631 ORTHO05D009566 4.4e-49 199.1 250 45.2
Ca_03026_v3 Cicer arietinum L. HOM05D007631 ORTHO05D009566 1.1e-47 194.5 214 50.5
FAN17G2236 Fragaria x ananassa HOM05D007631 ORTHO05D009566 4.1e-47 192.6 163 59.5
unitig_699.g19551 Utricularia gibba HOM05D007631 ORTHO05D009566 4.1e-47 192.6 226 45.1
arahy.Tifrunner.gnm1.ann1.C4PR70 Arachis hypogaea HOM05D007631 ORTHO05D009566 1.7e-45 187.2 219 47.0
HPP92_025628 Vanilla planifolia HOM05D007631 ORTHO05D009566 1.1e-44 184.5 253 44.3
Sed0008358 Sechium edule HOM05D007631 ORTHO05D009566 4.3e-44 182.6 221 47.5
vmacro10901 Vaccinium macrocarpon HOM05D007631 ORTHO05D009566 1.2e-43 181.0 229 44.1
Phvul.011G031300 Phaseolus vulgaris HOM05D007631 ORTHO05D009566 1.6e-43 180.6 212 46.7
Hund24286 Selenicereus undatus HOM05D007631 ORTHO05D009566 4.7e-43 179.1 167 52.7
Haze_20362 Corylus avellana HOM05D007631 ORTHO05D009566 5.2e-42 175.6 229 46.7
Oeu033537.1 Olea europaea HOM05D007631 ORTHO05D009566 6.8e-42 175.3 151 54.3
Zm00001eb076870 Zea mays HOM05D007631 ORTHO05D009566 2.6e-41 173.3 259 42.1
Os04g0525000 Oryza sativa ssp. japonica HOM05D007631 ORTHO05D009566 3.4e-41 172.9 243 41.6
Sc10g0006760 Simmondsia chinensis HOM05D007631 ORTHO05D009566 4.4e-41 172.6 154 55.2
DCAR_030399 Daucus carota HOM05D007631 ORTHO05D009566 2.9e-40 169.9 218 44.0
RcHm_v2.0_Chr4g0399891 Rosa chinensis HOM05D007631 ORTHO05D009566 1.4e-39 167.5 126 64.3
QL03p043760 Quercus lobata HOM05D007631 ORTHO05D009566 1.9e-39 167.2 120 67.5
FvH4_4g07430 Fragaria vesca HOM05D007631 ORTHO05D009566 2.1e-38 163.7 128 60.9
Cpa.g.sc63.2 Carica papaya HOM05D007631 ORTHO05D009566 2.7e-38 163.3 125 61.6
Thecc.02G311600 Theobroma cacao HOM05D007631 ORTHO05D009566 1.3e-37 161.0 127 63.0
Gorai.005G150800 Gossypium raimondii HOM05D007631 ORTHO05D009566 6.6e-37 158.7 122 61.5
Prupe.1G077300 Prunus persica HOM05D007631 ORTHO05D009566 1.5e-36 157.5 127 59.1
ATR0618G124 Amborella trichopoda HOM05D007631 ORTHO05D009566 1.9e-36 157.1 133 57.9
Psat7g173560 Pisum sativum HOM05D007631 ORTHO05D009566 1.9e-36 157.1 163 50.3
SGA_v2.0_scaffold88G27232 Striga asiatica HOM05D007631 ORTHO05D009566 4.3e-36 156.0 126 54.0
Atru.chr11.1322 Acer truncatum HOM05D007631 ORTHO05D009566 2.9e-32 143.3 116 58.6
Peaxi162Scf00363g00724 Petunia axillaris HOM05D007631 ORTHO05D009566 3.5e-30 136.3 106 63.2
CDE05G3190 Ceratophyllum demersum HOM05D005588 ORTHO05D006615 7.8e-30 135.2 167 44.9
MBI06_g36505_MAGBIO Magnolia biondii HOM05D007631 ORTHO05D009566 8.7e-29 131.7 151 45.0
Aqoxy7G02010 Aquilegia oxysepala HOM05D007631 ORTHO05D009566 3.4e-25 119.8 135 48.1
Atru.BG.289.p Acer truncatum HOM05D007631 ORTHO05D009566 9.9e-25 118.2 101 57.4
FAN22G0357 Fragaria x ananassa HOM05D007631 ORTHO05D009566 1.7e-24 117.5 95 58.9
Cfa019889 Carpinus fangiana HOM05D007631 ORTHO05D009566 5.4e-23 112.5 70 71.4
TAR622G1133 Trochodendron aralioides HOM05D007631 ORTHO05D009566 1.6e-22 110.9 95 55.8
Pp3c1_30620 Physcomitrium patens HOM05D007631 ORTHO05D009566 9.0e-18 95.1 183 30.6
Migut.E00614 Erythranthe guttata HOM05D007631 ORTHO05D009566 3.4e-17 93.2 96 47.9
Migut.E00703 Erythranthe guttata HOM05D007631 ORTHO05D009566 3.4e-17 93.2 96 47.9
CSS0013150 Camellia sinensis var. sinensis HOM05D007631 ORTHO05D009566 4.3e-12 76.3 57 66.7
Nitab4.5_0000139g0130 Nicotiana tabacum HOM05D007631 ORTHO05D009566 5.6e-12 75.9 190 28.4
SGA_v2.0_scaffold88G27234 Striga asiatica HOM05D007631 ORTHO05D009566 7.1e-07 58.9 64 42.2


User provided reference genes

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