Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 3.3e-157 558.5 325 100.0
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 5.6e-80 302.0 329 54.7
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 4.4e-77 292.4 324 55.6
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 5.8e-77 292.0 324 55.9
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 7.1e-75 285.0 324 56.2
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 3.0e-73 279.6 323 57.3
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 3.9e-73 279.3 328 53.0
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 3.9e-73 279.3 324 54.3
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 5.1e-73 278.9 322 55.3
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 6.6e-73 278.5 322 54.0
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 2.1e-71 273.5 328 54.9
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 2.1e-71 273.5 328 54.6
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 2.8e-71 273.1 324 56.5
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 6.2e-71 271.9 328 52.1
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.4e-70 270.8 323 52.3
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 1.4e-70 270.8 323 55.1
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 2.4e-70 270.0 329 54.4
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 5.2e-70 268.9 331 53.2
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 5.2e-70 268.9 325 54.8
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 6.9e-70 268.5 327 54.7
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 8.9e-70 268.1 327 52.9
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 1.2e-69 267.7 321 54.2
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 1.2e-69 267.7 326 53.1
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 2.0e-69 266.9 340 50.6
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 4.4e-69 265.8 324 52.2
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 5.8e-69 265.4 329 51.7
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 1.3e-68 264.2 321 50.2
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 3.8e-68 262.7 326 51.5
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 4.9e-68 262.3 321 51.1
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 4.9e-68 262.3 326 55.8
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 1.1e-67 261.2 322 49.7
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 1.1e-67 261.2 335 54.0
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 1.1e-67 261.2 322 53.7
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 1.1e-67 261.2 326 52.1
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 1.4e-67 260.8 325 51.1
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.9e-67 260.4 341 50.7
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 4.2e-67 259.2 324 51.2
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 5.4e-67 258.8 324 51.2
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 9.3e-67 258.1 336 51.5
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 1.2e-66 257.7 322 57.5
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 2.1e-66 256.9 326 51.8
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 2.1e-66 256.9 322 50.6
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 2.7e-66 256.5 365 46.6
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 2.7e-66 256.5 333 49.5
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 3.5e-66 256.1 339 49.9
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 3.5e-66 256.1 322 50.9
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 4.6e-66 255.8 324 51.2
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 1.0e-65 254.6 320 52.5
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 1.3e-65 254.2 338 50.0
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.7e-65 253.8 323 50.8
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 4.3e-64 249.2 326 48.5
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 9.6e-64 248.1 368 47.0
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 1.3e-63 247.7 322 52.2
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 2.1e-63 246.9 325 52.6
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 3.6e-63 246.1 325 50.2
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 3.6e-63 246.1 325 50.2
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 8.1e-63 245.0 340 49.1
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 8.1e-63 245.0 326 50.3
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 1.1e-62 244.6 326 50.6
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 2.4e-62 243.4 213 63.8
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 6.9e-62 241.9 330 50.3
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 6.9e-62 241.9 270 55.9
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 9.0e-62 241.5 324 48.5
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 2.6e-61 240.0 270 55.6
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 3.4e-61 239.6 331 48.6
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 3.4e-61 239.6 333 51.1
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 5.8e-61 238.8 326 48.5
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 5.8e-61 238.8 330 47.9
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 1.3e-60 237.7 330 49.1
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 2.2e-60 236.9 324 47.8
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 2.2e-60 236.9 325 49.8
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 4.9e-60 235.7 325 49.2
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 6.4e-60 235.3 322 50.3
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 6.4e-60 235.3 322 50.3
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 8.4e-60 235.0 326 47.9
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 1.4e-59 234.2 366 46.4
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 2.4e-59 233.4 330 48.5
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 7.1e-59 231.9 348 45.1
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 2.1e-58 230.3 322 50.9
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 2.1e-58 230.3 323 54.5
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 4.6e-58 229.2 335 45.7
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 6.0e-58 228.8 324 46.9
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 1.8e-57 227.3 204 64.2
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 1.8e-57 227.3 323 48.9
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 3.0e-57 226.5 339 45.7
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 3.9e-57 226.1 329 49.2
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 5.1e-57 225.7 325 47.1
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 1.1e-56 224.6 270 52.6
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 1.9e-56 223.8 321 46.7
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 3.3e-56 223.0 322 46.0
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 3.3e-56 223.0 323 46.7
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 5.6e-56 222.2 333 45.9
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 5.6e-56 222.2 325 45.5
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 9.6e-56 221.5 329 48.0
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 2.1e-55 220.3 295 49.5
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 4.8e-55 219.2 321 51.4
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 6.2e-55 218.8 323 51.1
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 8.1e-55 218.4 324 44.8
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 1.1e-51 208.0 217 58.1
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.1e-51 208.0 323 43.3
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 1.9e-51 207.2 198 57.6
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 1.9e-51 207.2 198 57.6
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 2.4e-51 206.8 321 43.0
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 1.6e-50 204.1 204 54.9
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 1.6e-50 204.1 204 54.9
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 1.6e-50 204.1 343 44.0
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 2.7e-50 203.4 268 51.9
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 6.0e-50 202.2 338 40.8
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 2.8e-47 193.4 323 47.4
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 4.5e-45 186.0 338 39.1
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 3.5e-42 176.4 322 44.1
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 7.9e-42 175.3 197 53.3
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 3.0e-41 173.3 225 46.7
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 5.1e-41 172.6 214 50.5
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 8.7e-41 171.8 263 44.9
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.5e-40 171.0 213 47.9
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 5.7e-40 169.1 342 40.9
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 1.1e-38 164.9 176 53.4
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 4.1e-38 162.9 130 68.5
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 5.3e-38 162.5 244 48.0
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 5.9e-37 159.1 215 47.0
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 2.2e-36 157.1 274 42.0
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 2.1e-34 150.6 340 35.0
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 2.3e-33 147.1 203 46.3
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 5.1e-33 146.0 223 47.1
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 9.7e-32 141.7 230 46.1
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 2.2e-31 140.6 171 49.7
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 5.3e-30 136.0 259 39.0
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.2e-29 134.8 234 45.7
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 1.5e-29 134.4 202 44.6
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 2.6e-29 133.7 199 40.7
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 5.9e-29 132.5 258 38.8
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 1.6e-26 124.4 280 37.5
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 2.7e-26 123.6 331 34.7
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 5.1e-25 119.4 322 38.5
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 1.8e-22 110.9 344 34.3
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 3.1e-22 110.2 103 60.2
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 6.9e-22 109.0 109 57.8
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 5.5e-19 99.4 109 51.4
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 2.3e-17 94.0 82 62.2
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 2.6e-16 90.5 101 51.5
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 1.3e-15 88.2 149 40.9
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 6.3e-15 85.9 71 69.0
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 6.5e-12 75.9 330 30.0
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 1.2e-10 71.6 99 48.5
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.2e-10 71.6 100 44.0
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 8.0e-10 68.9 120 38.3
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 1.2e-08 65.1 94 46.8
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 5.7e-08 62.8 53 67.9
Cpa.g.sc23.121 Carica papaya HOM05D002737 ORTHO05D005828 2.2e-07 60.8 156 39.1
Rhsim13G0195400 Rhododendron simsii HOM05D002737 ORTHO05D005828 6.3e-07 59.3 152 36.2
CARHR119790 Cardamine hirsuta HOM05D002737 ORTHO05D005828 9.1e-06 55.5 222 27.0


User provided reference genes

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