Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 2.1e-109 399.1 201 100.0
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 2.1e-109 399.1 201 100.0
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 2.2e-79 299.3 198 74.2
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 8.5e-79 297.4 199 73.9
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 3.2e-78 295.4 199 74.9
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 8.0e-77 290.8 198 72.2
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 8.0e-77 290.8 204 71.1
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 2.3e-76 289.3 198 71.7
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 2.3e-76 289.3 196 73.5
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 4.0e-76 288.5 204 69.6
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 5.2e-76 288.1 199 72.4
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 1.2e-75 287.0 202 71.3
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 2.0e-75 286.2 202 71.8
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 9.7e-75 283.9 201 71.1
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 1.3e-74 283.5 197 73.6
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 1.3e-74 283.5 199 71.4
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 4.8e-74 281.6 199 70.9
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 1.1e-73 280.4 198 70.2
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 1.1e-73 280.4 238 61.3
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 1.8e-73 279.6 201 72.1
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 1.8e-73 279.6 198 72.7
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 3.1e-73 278.9 201 70.6
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 3.1e-73 278.9 198 72.2
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 4.1e-73 278.5 199 69.8
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 4.1e-73 278.5 199 71.9
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 5.3e-73 278.1 198 72.7
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 5.3e-73 278.1 198 72.2
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 1.2e-72 276.9 198 70.7
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 3.5e-72 275.4 188 75.5
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 5.9e-72 274.6 201 71.1
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 1.0e-71 273.9 198 68.2
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 1.0e-71 273.9 199 68.3
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 1.0e-71 273.9 198 69.7
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 1.0e-71 273.9 198 67.7
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 2.2e-71 272.7 198 66.7
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 2.2e-71 272.7 198 70.7
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 2.9e-71 272.3 198 66.2
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 2.9e-71 272.3 198 66.2
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 2.9e-71 272.3 198 66.2
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 2.9e-71 272.3 198 67.7
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 2.9e-71 272.3 201 68.2
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 5.0e-71 271.6 199 67.8
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 6.5e-71 271.2 198 70.2
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 8.5e-71 270.8 198 65.7
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 8.5e-71 270.8 198 69.2
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 1.1e-70 270.4 198 67.2
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 1.9e-70 269.6 198 65.7
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 3.2e-70 268.9 199 65.3
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 5.5e-70 268.1 198 69.2
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 9.4e-70 267.3 199 64.3
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 9.4e-70 267.3 199 66.8
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 9.4e-70 267.3 198 65.2
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 1.2e-69 266.9 201 68.2
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 2.1e-69 266.2 199 69.3
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 2.7e-69 265.8 201 65.7
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 2.7e-69 265.8 201 65.7
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 2.7e-69 265.8 197 68.5
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 2.7e-69 265.8 200 68.0
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 4.7e-69 265.0 200 67.0
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 4.7e-69 265.0 199 65.8
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 1.8e-68 263.1 198 64.6
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 1.8e-68 263.1 198 63.1
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 1.8e-68 263.1 201 67.7
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 2.3e-68 262.7 234 62.0
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 3.0e-68 262.3 198 64.1
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 8.8e-68 260.8 198 66.2
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 1.3e-66 256.9 198 62.6
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 3.7e-66 255.4 203 65.0
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 3.7e-66 255.4 203 65.0
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 4.8e-66 255.0 202 64.9
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 1.1e-65 253.8 201 65.2
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 1.8e-65 253.1 202 64.9
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 1.8e-65 253.1 203 64.5
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 1.8e-65 253.1 203 64.5
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 9.1e-65 250.8 188 68.6
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 9.1e-65 250.8 199 64.3
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 1.2e-64 250.4 200 63.0
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 1.6e-64 250.0 201 63.2
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 2.7e-64 249.2 200 62.5
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 3.5e-64 248.8 193 67.9
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 5.9e-64 248.1 197 63.5
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 2.3e-63 246.1 201 63.7
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 5.0e-63 245.0 201 62.2
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 8.6e-63 244.2 199 62.8
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 1.5e-62 243.4 199 64.3
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 1.9e-62 243.0 201 63.2
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 3.3e-62 242.3 284 49.6
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 7.2e-62 241.1 194 62.9
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 1.0e-60 237.3 199 60.8
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 5.7e-59 231.5 162 74.1
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 7.5e-59 231.1 190 63.2
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 9.2e-57 224.2 201 60.7
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 9.2e-57 224.2 201 60.7
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.0e-55 220.7 201 59.2
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 1.0e-55 220.7 192 59.9
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 1.3e-55 220.3 190 63.2
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.7e-55 219.9 201 58.7
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 2.3e-55 219.5 201 59.7
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 8.6e-55 217.6 200 59.5
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 4.3e-54 215.3 201 56.7
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 7.3e-54 214.5 201 57.2
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 8.0e-53 211.1 202 56.4
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 3.1e-52 209.1 200 56.5
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 5.2e-52 208.4 201 55.7
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 9.2e-49 197.6 186 59.1
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 2.5e-46 189.5 148 60.8
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 3.0e-39 166.0 192 50.5
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 6.2e-37 158.3 123 69.1
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 1.5e-35 153.7 191 45.5
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 1.3e-31 140.6 121 63.6
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 4.3e-30 135.6 121 60.3
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 6.2e-29 131.7 191 43.5
Psat1g156280 Pisum sativum HOM05D006871 ORTHO05D008544 5.6e-22 108.6 127 53.5
MD05G1198200 Malus domestica HOM05D006871 ORTHO05D008544 1.7e-15 87.0 55 69.1
Cre17.g726650 Chlamydomonas reinhardtii HOM05D006871 ORTHO05D008544 1.5e-14 84.0 195 34.4
MCO15G582 Micromonas commoda HOM05D006871 ORTHO05D008544 2.4e-12 76.6 211 32.2
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 4.0e-12 75.9 67 53.7
Nitab4.5_0000119g0320 Nicotiana tabacum HOM05D006871 ORTHO05D008544 1.3e-10 70.9 46 63.0
RcHm_v2.0_Chr2g0134071 Rosa chinensis HOM05D006871 ORTHO05D008544 4.9e-10 68.9 64 60.9
MD03G1286500 Malus domestica HOM05D006871 ORTHO05D008544 3.5e-08 62.8 38 71.1


User provided reference genes

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