Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1676 Punica granatum HOM05D002733 ORTHO05D010023 7.4e-178 627.1 318 100.0
Eucgr.J00677 Eucalyptus grandis HOM05D002733 ORTHO05D010023 1.1e-40 171.4 388 37.6
Gorai.001G135300 Gossypium raimondii HOM05D002733 ORTHO05D010023 1.8e-30 137.5 359 36.2
Gohir.D07G125500 Gossypium hirsutum HOM05D002733 ORTHO05D010023 4.0e-30 136.3 362 36.5
Gohir.A07G121200 Gossypium hirsutum HOM05D002733 ORTHO05D010023 1.2e-29 134.8 359 35.9
Thecc.09G246300 Theobroma cacao HOM05D002733 ORTHO05D010023 2.6e-29 133.7 405 32.1
Cfa009898 Carpinus fangiana HOM05D002733 ORTHO05D010023 3.4e-29 133.3 357 35.3
QL01p016685 Quercus lobata HOM05D002733 ORTHO05D010023 1.7e-28 131.0 365 33.7
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 9.2e-27 125.2 357 34.2
Sabra16G0168800 Salix brachista HOM05D002733 ORTHO05D010023 1.6e-26 124.4 382 31.7
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 8.6e-25 118.6 332 34.9
Atru.chr3.3004 Acer truncatum HOM05D002733 ORTHO05D010023 5.6e-24 115.9 384 31.8
CiPaw.13G148700 Carya illinoinensis HOM05D002733 ORTHO05D010023 1.6e-23 114.4 396 31.1
Potri.009G068200 Populus trichocarpa HOM05D002733 ORTHO05D010023 2.8e-23 113.6 286 37.1
COL.COLO4_02755 Corchorus olitorius HOM05D002733 ORTHO05D010023 1.4e-22 111.3 197 44.7
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 2.3e-22 110.5 376 33.2
Potri.001G274000 Populus trichocarpa HOM05D002733 ORTHO05D010023 2.0e-21 107.5 377 29.2
Migut.D00675 Erythranthe guttata HOM05D002733 ORTHO05D010023 3.4e-21 106.7 349 32.7
MD00G1045800 Malus domestica HOM05D002733 ORTHO05D010023 4.4e-21 106.3 352 30.4
RcHm_v2.0_Chr6g0258931 Rosa chinensis HOM05D002733 ORTHO05D010023 4.4e-21 106.3 341 32.8
Ciclev10017459m.g Citrus clementina HOM05D002733 ORTHO05D010023 1.7e-20 104.4 348 32.5
FAN15G1799 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.4e-19 101.3 340 32.4
Manes.02G136900 Manihot esculenta HOM05D002733 ORTHO05D010023 1.9e-19 100.9 412 28.2
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 2.4e-19 100.5 181 41.4
MSTRG.18469 Avicennia marina HOM05D002733 ORTHO05D010023 5.4e-19 99.4 335 32.8
FAN20G0750 Fragaria x ananassa HOM05D002733 ORTHO05D010023 7.0e-19 99.0 341 31.4
LjContig00564g0023278 Lotus japonicus HOM05D002733 ORTHO05D010023 1.2e-18 98.2 198 39.9
FAN27G2498 Fragaria x ananassa HOM05D002733 ORTHO05D010023 2.0e-18 97.4 331 31.7
Lsat_1_v5_gn_2_32340 Lactuca sativa HOM05D002733 ORTHO05D010023 2.0e-18 97.4 292 31.8
Hma1.2p1_0460F.1_g157570 Hydrangea macrophylla HOM05D002733 ORTHO05D010023 3.5e-18 96.7 378 31.0
Glyma.14G036400 Glycine max HOM05D002733 ORTHO05D010023 4.6e-18 96.3 278 35.6
Glyma.02G278200 Glycine max HOM05D002733 ORTHO05D010023 6.0e-18 95.9 209 38.3
Lalb_Chr10g0106141 Lupinus albus HOM05D002733 ORTHO05D010023 7.8e-18 95.5 196 41.8
Actinidia06978 Actinidia chinensis HOM05D002733 ORTHO05D010023 1.0e-17 95.1 224 39.7
MD03G1164300 Malus domestica HOM05D002733 ORTHO05D010023 1.0e-17 95.1 346 28.0
ECA238G3721 Erigeron canadensis HOM05D002733 ORTHO05D010023 1.7e-17 94.4 217 37.3
FvH4_2g06740 Fragaria vesca HOM05D002733 ORTHO05D010023 1.7e-17 94.4 342 31.6
Oeu025912.1 Olea europaea HOM05D002733 ORTHO05D010023 2.3e-17 94.0 255 36.5
TWI79G0642 Tripterygium wilfordii HOM05D002733 ORTHO05D010023 2.3e-17 94.0 334 31.4
arahy.Tifrunner.gnm1.ann1.88337C Arachis hypogaea HOM05D002733 ORTHO05D010023 6.6e-17 92.4 183 39.9
arahy.Tifrunner.gnm1.ann1.MI3W0U Arachis hypogaea HOM05D002733 ORTHO05D010023 8.6e-17 92.0 183 39.9
AUR62000212 Chenopodium quinoa HOM05D002733 ORTHO05D010023 8.6e-17 92.0 323 34.7
Manes.05G200100 Manihot esculenta HOM05D002733 ORTHO05D010023 8.6e-17 92.0 367 29.2
AUR62006558 Chenopodium quinoa HOM05D002733 ORTHO05D010023 1.1e-16 91.7 327 33.6
Phvul.008G202700 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 2.5e-16 90.5 179 42.5
CANSAT54G1196 Cannabis sativa HOM05D002733 ORTHO05D010023 3.3e-16 90.1 360 29.2
Prupe.4G260600 Prunus persica HOM05D002733 ORTHO05D010023 3.3e-16 90.1 262 34.4
FAN24G3374 Fragaria x ananassa HOM05D002733 ORTHO05D010023 5.6e-16 89.4 343 30.6
Ca_06190_v3 Cicer arietinum L. HOM05D002733 ORTHO05D010023 2.1e-15 87.4 190 37.4
PGR102G0853 Punica granatum HOM05D002733 ORTHO05D010023 2.1e-15 87.4 282 33.3
Psat0s1289g0080 Pisum sativum HOM05D002733 ORTHO05D010023 6.2e-15 85.9 200 40.5
Aqoxy2G00438 Aquilegia oxysepala HOM05D002733 ORTHO05D010023 8.0e-15 85.5 194 37.6
Medtr5g089100 Medicago truncatula HOM05D002733 ORTHO05D010023 8.0e-15 85.5 286 32.9
Phvul.008G165900 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 1.8e-14 84.3 174 40.2
DCAR_029984 Daucus carota HOM05D002733 ORTHO05D010023 3.1e-14 83.6 275 32.0
TPR.G16419 Trifolium pratense HOM05D002733 ORTHO05D010023 6.8e-14 82.4 217 35.0
ClCG02G022730 Citrullus lanatus HOM05D002733 ORTHO05D010023 8.9e-14 82.0 208 34.6
Dinv36151 Davidia involucrata HOM05D002733 ORTHO05D010023 8.9e-14 82.0 293 33.1
CsaV3_6G038850 Cucumis sativus L. HOM05D002733 ORTHO05D010023 1.5e-13 81.3 161 39.1
Dinv36152 Davidia involucrata HOM05D000362 ORTHO05D000325 1.5e-13 81.3 151 42.4
Ah.06g194720 Amaranthus hybridus HOM05D002733 ORTHO05D010023 4.4e-13 79.7 337 30.3
Sabra09G0051300 Salix brachista HOM05D002733 ORTHO05D010023 4.4e-13 79.7 82 57.3
MELO3C014550.2 Cucumis melo HOM05D002733 ORTHO05D010023 1.7e-12 77.8 158 38.6
Sc16g0010940 Simmondsia chinensis HOM05D002733 ORTHO05D010023 8.3e-12 75.5 308 31.8
Peaxi162Scf00004g00424 Petunia axillaris HOM05D018239 ORTHO05D010023 2.1e-10 70.9 268 30.6
Sed0027264 Sechium edule HOM05D002733 ORTHO05D010023 3.5e-10 70.1 241 32.8
Solyc11g065010.1 Solanum lycopersicum HOM05D018239 ORTHO05D010023 3.5e-10 70.1 357 27.5
TAR633G0275 Trochodendron aralioides HOM05D002733 ORTHO05D010023 6.0e-10 69.3 153 37.3
VMungo0647G1446 Vigna mungo HOM05D002733 ORTHO05D010023 1.0e-09 68.6 176 38.6
HanXRQChr03g0090311 Helianthus annuus HOM05D002733 ORTHO05D010023 2.3e-09 67.4 159 37.7
Nitab4.5_0006764g0040 Nicotiana tabacum HOM05D018239 ORTHO05D010023 2.3e-09 67.4 349 25.5
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 3.9e-09 66.6 150 36.7
Rhsim13G0206300 Rhododendron simsii HOM05D002733 ORTHO05D010023 1.1e-08 65.1 204 34.3
MBI13_g09212_MAGBIO Magnolia biondii HOM05D002733 ORTHO05D010023 3.3e-08 63.5 346 26.3
Sopen11g024780 Solanum pennellii HOM05D018239 ORTHO05D010023 4.3e-08 63.2 282 30.1
CAN.G468.8 Capsicum annuum HOM05D018239 ORTHO05D010023 9.5e-08 62.0 361 26.9
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 2.8e-07 60.5 190 30.0
unitig_37.g12810 Utricularia gibba HOM05D001841 ORTHO05D001767 2.8e-07 60.5 331 28.1
Glyma.02G134500 Glycine max HOM05D001841 ORTHO05D001767 3.6e-07 60.1 194 33.0
Actinidia00458 Actinidia chinensis HOM05D001841 ORTHO05D001767 4.7e-07 59.7 193 34.2
Lsat_1_v5_gn_3_109980 Lactuca sativa HOM05D002733 ORTHO05D010023 6.2e-07 59.3 144 35.4
vmacro19487 Vaccinium macrocarpon HOM05D001841 ORTHO05D001767 6.2e-07 59.3 166 31.3
SGA_v2.0_scaffold29G12225 Striga asiatica HOM05D002733 ORTHO05D010023 1.1e-06 58.5 164 36.6
PSO675G9020 Papaver somniferum HOM05D001841 ORTHO05D001767 1.4e-06 58.2 374 24.1
SEGI_26394 Sequoiadendron giganteum HOM05D001841 ORTHO05D001767 1.4e-06 58.2 116 38.8
MSTRG.20139 Avicennia marina HOM05D001841 ORTHO05D001767 2.3e-06 57.4 216 31.5
SGA_v2.0_scaffold32G13089 Striga asiatica HOM05D001841 ORTHO05D001767 4.0e-06 56.6 250 30.4
PGSC0003DMG400009447 Solanum tuberosum HOM05D018239 ORTHO05D010023 5.2e-06 56.2 373 24.9
Peaxi162Scf00684g00566 Petunia axillaris HOM05D001841 ORTHO05D001767 6.8e-06 55.8 96 40.6


User provided reference genes

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