Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1464 Punica granatum HOM05D007298 ORTHO05D009226 9.3e-153 543.5 273 100.0
COL.COLO4_37432 Corchorus olitorius HOM05D007298 ORTHO05D009226 2.3e-63 246.5 290 54.1
Duzib205G1649 Durio zibethinus HOM05D007298 ORTHO05D009226 7.5e-62 241.5 281 53.4
CiPaw.13G179900 Carya illinoinensis HOM05D007298 ORTHO05D009226 4.6e-59 232.3 283 53.0
TAR623G1587 Trochodendron aralioides HOM05D007298 ORTHO05D009226 1.3e-58 230.7 275 53.8
Thecc.03G118900 Theobroma cacao HOM05D007298 ORTHO05D009226 2.3e-58 229.9 287 53.0
Cfa009528 Carpinus fangiana HOM05D007298 ORTHO05D009226 3.0e-58 229.6 291 54.0
Lj4g0005920 Lotus japonicus HOM05D007298 ORTHO05D009226 1.5e-57 227.3 270 53.0
VMungo0251G1522 Vigna mungo HOM05D007298 ORTHO05D009226 4.3e-57 225.7 275 52.0
Psat7g113280 Pisum sativum HOM05D007298 ORTHO05D009226 1.2e-56 224.2 278 50.0
Nn2g15906 Nelumbo nucifera HOM05D007298 ORTHO05D009226 2.1e-56 223.4 302 49.7
Hma1.2p1_1436F.1_g283160 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 3.6e-56 222.6 280 52.1
TPR.G16338 Trifolium pratense HOM05D007298 ORTHO05D009226 1.8e-55 220.3 279 49.1
Lalb_Chr16g0383911 Lupinus albus HOM05D007298 ORTHO05D009226 2.3e-55 219.9 286 48.3
Phvul.002G230700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 2.3e-55 219.9 273 51.6
Gohir.A12G186800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 5.2e-55 218.8 277 51.6
Haze_22918 Corylus avellana HOM05D007298 ORTHO05D009226 8.9e-55 218.0 289 52.6
Medtr4g088515 Medicago truncatula HOM05D000062 ORTHO05D000043 8.9e-55 218.0 278 48.9
Gohir.D12G189800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 1.5e-54 217.2 277 51.3
Gorai.008G203600 Gossypium raimondii HOM05D007298 ORTHO05D009226 2.0e-54 216.9 277 50.9
Actinidia30606 Actinidia chinensis HOM05D007298 ORTHO05D009226 2.6e-54 216.5 268 51.5
Glyma.07G199400 Glycine max HOM05D007298 ORTHO05D009226 2.6e-54 216.5 279 51.3
vmacro16084 Vaccinium macrocarpon HOM05D007298 ORTHO05D009226 4.4e-54 215.7 279 51.6
Sed0017427 Sechium edule HOM05D007298 ORTHO05D009226 1.3e-53 214.2 278 51.1
Sabra01G0000900 Salix brachista HOM05D007298 ORTHO05D009226 3.7e-53 212.6 288 51.7
MELO3C026268.2 Cucumis melo HOM05D007298 ORTHO05D009226 4.9e-53 212.2 270 52.6
CsaV3_1G001220 Cucumis sativus L. HOM05D007298 ORTHO05D009226 6.4e-53 211.8 270 52.2
ClCG06G017280 Citrullus lanatus HOM05D007298 ORTHO05D009226 1.1e-52 211.1 279 50.5
Lalb_Chr09g0327771 Lupinus albus HOM05D007298 ORTHO05D009226 7.1e-52 208.4 286 47.6
TWI32G0891 Tripterygium wilfordii HOM05D007298 ORTHO05D009226 1.2e-51 207.6 249 52.2
Eucgr.J01725 Eucalyptus grandis HOM05D007298 ORTHO05D009226 6.0e-51 205.3 271 52.0
Potri.001G001000 Populus trichocarpa HOM05D007298 ORTHO05D009226 5.1e-50 202.2 270 49.6
CSS0015764 Camellia sinensis var. sinensis HOM05D007298 ORTHO05D009226 6.6e-50 201.8 269 49.1
MBI13_g02430_MAGBIO Magnolia biondii HOM05D007298 ORTHO05D009226 1.5e-49 200.7 283 50.2
PGSC0003DMG400025413 Solanum tuberosum HOM05D007298 ORTHO05D009226 4.3e-49 199.1 271 47.6
Cc11_g17470 Coffea canephora HOM05D007298 ORTHO05D009226 5.6e-49 198.7 284 47.5
arahy.Tifrunner.gnm1.ann1.IS7ZQD Arachis hypogaea HOM05D002349 ORTHO05D002464 9.6e-49 198.0 283 47.0
arahy.Tifrunner.gnm1.ann1.MB6W4F Arachis hypogaea HOM05D002349 ORTHO05D002464 9.6e-49 198.0 283 47.0
Peaxi162Scf00128g01770 Petunia axillaris HOM05D007298 ORTHO05D009226 2.8e-48 196.4 284 45.4
Rhsim12G0097800 Rhododendron simsii HOM05D007298 ORTHO05D009226 3.6e-48 196.1 263 47.9
Aqoxy2G04036 Aquilegia oxysepala HOM05D007298 ORTHO05D009226 8.1e-48 194.9 289 47.8
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.1e-47 194.5 294 44.2
QL01p007822 Quercus lobata HOM05D007298 ORTHO05D009226 1.1e-47 194.5 286 49.3
Nn7g35796 Nelumbo nucifera HOM05D007298 ORTHO05D009226 3.1e-47 193.0 287 47.7
Glyma.13G177000 Glycine max HOM05D007298 ORTHO05D009226 4.0e-47 192.6 280 48.2
Lalb_Chr05g0218531 Lupinus albus HOM05D007298 ORTHO05D009226 3.4e-46 189.5 277 46.6
Ca_18576_v3 Cicer arietinum L. HOM05D007298 ORTHO05D009226 4.4e-46 189.1 265 47.2
Nitab4.5_0008442g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 3.2e-44 183.0 277 45.8
Migut.K01030 Erythranthe guttata HOM05D007298 ORTHO05D009226 2.1e-43 180.3 283 45.2
Ciclev10017525m.g Citrus clementina HOM05D007298 ORTHO05D009226 3.5e-43 179.5 249 49.8
RcHm_v2.0_Chr5g0084091 Rosa chinensis HOM05D007298 ORTHO05D009226 1.0e-42 177.9 311 42.8
Sopen05g018720 Solanum pennellii HOM05D007298 ORTHO05D009226 1.3e-42 177.6 253 47.0
Manes.15G111000 Manihot esculenta HOM05D007298 ORTHO05D009226 2.3e-42 176.8 233 51.9
MD11G1000700 Malus domestica HOM05D007298 ORTHO05D009226 5.1e-42 175.6 284 44.4
FvH4_3g45980 Fragaria vesca HOM05D007298 ORTHO05D009226 1.1e-41 174.5 295 44.1
FAN16G2589 Fragaria x ananassa HOM05D007298 ORTHO05D009226 7.3e-41 171.8 296 43.2
Dinv31519 Davidia involucrata HOM05D007298 ORTHO05D009226 9.6e-41 171.4 221 52.5
Solyc05g024020.1 Solanum lycopersicum HOM05D007298 ORTHO05D009226 9.6e-41 171.4 250 46.4
Actinidia09612 Actinidia chinensis HOM05D007298 ORTHO05D009226 3.6e-40 169.5 262 46.6
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 3.6e-40 169.5 279 42.3
Sc05g0003880 Simmondsia chinensis HOM05D007298 ORTHO05D009226 3.6e-40 169.5 310 42.9
Duzib084G1143 Durio zibethinus HOM05D007298 ORTHO05D009226 1.3e-37 161.0 197 55.3
AUR62008624 Chenopodium quinoa HOM05D007298 ORTHO05D009226 6.4e-37 158.7 245 46.1
DCAR_006996 Daucus carota HOM05D007298 ORTHO05D009226 8.4e-37 158.3 322 39.4
HanXRQChr12g0385721 Helianthus annuus HOM05D007298 ORTHO05D009226 1.1e-36 157.9 186 51.6
CARHR233970 Cardamine hirsuta HOM05D007298 ORTHO05D009226 1.4e-36 157.5 293 44.4
FAN11G2203 Fragaria x ananassa HOM05D007298 ORTHO05D009226 5.4e-36 155.6 279 43.4
Hma1.2p1_0459F.1_g157260 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 5.4e-36 155.6 225 49.3
Lsat_1_v5_gn_4_2201 Lactuca sativa HOM05D007298 ORTHO05D009226 1.2e-35 154.5 262 43.5
FAN25G2175 Fragaria x ananassa HOM05D007298 ORTHO05D009226 1.6e-35 154.1 280 43.9
C07p54880 Brassica napus HOM05D007298 ORTHO05D009226 2.7e-35 153.3 286 41.6
BolC7t45976H Brassica oleracea HOM05D007298 ORTHO05D009226 2.7e-35 153.3 286 41.6
AUR62033147 Chenopodium quinoa HOM05D007298 ORTHO05D009226 2.7e-35 153.3 236 46.6
FAN21G1139 Fragaria x ananassa HOM05D007298 ORTHO05D009226 2.7e-35 153.3 280 42.9
Sp7g24320 Schrenkiella parvula HOM05D007298 ORTHO05D009226 2.7e-35 153.3 289 42.9
AT4G26415 Arabidopsis thaliana HOM05D007298 ORTHO05D009226 3.5e-35 152.9 293 42.0
A03p56680 Brassica napus HOM05D007298 ORTHO05D009226 6.0e-35 152.1 285 41.8
BraA03t14738Z Brassica rapa HOM05D007298 ORTHO05D009226 6.0e-35 152.1 285 41.8
Prupe.6G001000 Prunus persica HOM05D007298 ORTHO05D009226 7.8e-35 151.8 333 38.1
Carub.0007s1454 Capsella rubella HOM05D007298 ORTHO05D009226 1.0e-34 151.4 292 41.8
ATR0068G085 Amborella trichopoda HOM05D007298 ORTHO05D009226 1.3e-34 151.0 341 37.5
Sed0020092 Sechium edule HOM05D007298 ORTHO05D009226 3.9e-34 149.4 212 49.5
EL10Ac4g07728 Beta vulgaris HOM05D007298 ORTHO05D009226 8.7e-34 148.3 264 43.2
AL7G26540 Arabidopsis lyrata HOM05D007298 ORTHO05D009226 1.1e-33 147.9 274 42.3
Thhalv10026008m.g Eutrema salsugineum HOM05D007298 ORTHO05D009226 1.5e-33 147.5 265 44.9
unitig_22.g6385 Utricularia gibba HOM05D007298 ORTHO05D009226 1.9e-33 147.1 187 48.7
CANSAT11G1103 Cannabis sativa HOM05D007298 ORTHO05D009226 9.6e-33 144.8 224 47.3
BcaC06g32750 Brassica carinata HOM05D007298 ORTHO05D009226 2.8e-32 143.3 266 42.1
Ah.08g213460 Amaranthus hybridus HOM05D007298 ORTHO05D009226 4.8e-32 142.5 283 38.9
SGA_v2.0_scaffold9G04794 Striga asiatica HOM05D002076 ORTHO05D002087 4.8e-32 142.5 194 45.9
THA.LOC104813474 Tarenaya hassleriana HOM05D007298 ORTHO05D009226 8.1e-32 141.7 280 42.5
DCAR_006994 Daucus carota HOM05D007298 ORTHO05D009226 1.4e-31 141.0 308 38.0
BcaNung02423 Brassica carinata HOM05D007298 ORTHO05D009226 4.5e-30 136.0 287 40.4
SalBow2G0405 Salvia bowleyana HOM05D007298 ORTHO05D009226 1.7e-29 134.0 249 41.0
SalBow2G1404 Salvia bowleyana HOM05D007298 ORTHO05D009226 1.7e-29 134.0 249 41.0
Cpa.g.sc119.13 Carica papaya HOM05D007298 ORTHO05D009226 4.2e-28 129.4 266 42.5
Glyma.15G076400 Glycine max HOM05D007298 ORTHO05D009226 7.4e-25 118.6 198 42.9
Zm00001eb127960 Zea mays HOM05D007298 ORTHO05D009226 2.1e-24 117.1 264 37.1
Glyma.13G237100 Glycine max HOM05D007298 ORTHO05D009226 1.6e-19 100.9 127 49.6
Phvul.006G183700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 1.9e-17 94.0 197 38.6
CDE07G0295 Ceratophyllum demersum HOM05D000114 ORTHO05D000038 2.2e-13 80.5 113 46.0
Nitab4.5_0000340g0060 Nicotiana tabacum HOM05D007298 ORTHO05D009226 4.8e-08 62.8 87 44.8


User provided reference genes

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