Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1443 Punica granatum HOM05D006618 ORTHO05D008291 9.5e-94 347.1 204 100.0
Manes.05G067500 Manihot esculenta HOM05D006618 ORTHO05D008291 5.0e-42 175.3 201 61.2
CSS0038517 Camellia sinensis var. sinensis HOM05D006618 ORTHO05D008291 4.8e-37 158.7 203 56.2
Potri.014G134700 Populus trichocarpa HOM05D006618 ORTHO05D008291 4.8e-37 158.7 206 54.4
Prupe.8G253400 Prunus persica HOM05D006618 ORTHO05D008291 4.8e-37 158.7 231 49.4
EL10Ac7g17390 Beta vulgaris HOM05D006618 ORTHO05D008291 3.1e-36 156.0 199 54.3
Phvul.001G202800 Phaseolus vulgaris HOM05D006618 ORTHO05D008291 3.1e-36 156.0 176 54.5
Hma1.2p1_0399F.1_g144140 Hydrangea macrophylla HOM05D006618 ORTHO05D008291 4.1e-36 155.6 203 51.2
CiPaw.08G099900 Carya illinoinensis HOM05D006618 ORTHO05D008291 6.9e-36 154.8 210 55.2
Sabra14G0100400 Salix brachista HOM05D006618 ORTHO05D008291 6.9e-36 154.8 207 60.4
Sed0009421 Sechium edule HOM05D006618 ORTHO05D008291 6.9e-36 154.8 204 52.5
Sc17g0003540 Simmondsia chinensis HOM05D006618 ORTHO05D008291 6.9e-36 154.8 175 56.6
Hund18083 Selenicereus undatus HOM05D006618 ORTHO05D008291 2.0e-35 153.3 200 52.5
Atru.chr5.1237 Acer truncatum HOM05D006618 ORTHO05D008291 3.4e-35 152.5 202 52.5
VMungo1383G0445 Vigna mungo HOM05D006618 ORTHO05D008291 3.4e-35 152.5 175 54.3
Sed0008392 Sechium edule HOM05D006618 ORTHO05D008291 1.0e-34 151.0 207 51.7
Duzib211G0091 Durio zibethinus HOM05D006618 ORTHO05D008291 1.3e-34 150.6 203 53.2
MSTRG.18188 Avicennia marina HOM05D006618 ORTHO05D008291 1.7e-34 150.2 203 51.7
MD11G1299100 Malus domestica HOM05D006618 ORTHO05D008291 2.9e-34 149.4 233 44.2
AUR62036645 Chenopodium quinoa HOM05D006618 ORTHO05D008291 6.5e-34 148.3 204 54.9
Ah.08g212660 Amaranthus hybridus HOM05D006618 ORTHO05D008291 8.5e-34 147.9 174 59.2
Aqoxy5G00606 Aquilegia oxysepala HOM05D006618 ORTHO05D008291 8.5e-34 147.9 181 51.9
THA.LOC104801197 Tarenaya hassleriana HOM05D006618 ORTHO05D008291 1.1e-33 147.5 206 51.5
Duzib138G1186 Durio zibethinus HOM05D006618 ORTHO05D008291 3.2e-33 146.0 206 51.9
Solyc06g084500.3 Solanum lycopersicum HOM05D006618 ORTHO05D008291 7.2e-33 144.8 171 52.6
Eucgr.H01207 Eucalyptus grandis HOM05D006618 ORTHO05D008291 9.4e-33 144.4 212 52.8
Glyma.03G209500 Glycine max HOM05D006618 ORTHO05D008291 9.4e-33 144.4 193 50.3
Peaxi162Scf01039g00026 Petunia axillaris HOM05D006618 ORTHO05D008291 1.2e-32 144.1 182 52.2
Dinv33000 Davidia involucrata HOM05D006618 ORTHO05D008291 2.1e-32 143.3 180 53.3
Carub.0006s3388 Capsella rubella HOM05D006618 ORTHO05D008291 6.1e-32 141.7 172 49.4
FvH4_2g24850 Fragaria vesca HOM05D006618 ORTHO05D008291 6.1e-32 141.7 200 48.0
FAN24G2031 Fragaria x ananassa HOM05D006618 ORTHO05D008291 6.1e-32 141.7 200 48.0
Lsat_1_v5_gn_9_4841 Lactuca sativa HOM05D006618 ORTHO05D008291 7.9e-32 141.4 173 56.1
Aa31LG5G2680 Aethionema arabicum HOM05D006618 ORTHO05D008291 2.3e-31 139.8 174 50.6
Ca_23188_v3 Cicer arietinum L. HOM05D006618 ORTHO05D008291 2.3e-31 139.8 174 58.0
Glyma.19G206900 Glycine max HOM05D006618 ORTHO05D008291 2.3e-31 139.8 174 50.0
CAN.G1209.34 Capsicum annuum HOM05D006618 ORTHO05D008291 3.0e-31 139.4 178 51.1
COL.COLO4_08018 Corchorus olitorius HOM05D006618 ORTHO05D008291 3.0e-31 139.4 193 50.8
ClCG09G006430 Citrullus lanatus HOM05D006618 ORTHO05D008291 3.9e-31 139.0 205 51.7
PSO170G6580 Papaver somniferum HOM05D006618 ORTHO05D008291 3.9e-31 139.0 188 50.5
MD03G1276600 Malus domestica HOM05D006618 ORTHO05D008291 5.1e-31 138.7 241 42.7
PSO210G2131 Papaver somniferum HOM05D006618 ORTHO05D008291 6.7e-31 138.3 181 51.4
SGA_v2.0_scaffold11G05756 Striga asiatica HOM05D006618 ORTHO05D008291 6.7e-31 138.3 173 58.4
Sopen06g035880 Solanum pennellii HOM05D006618 ORTHO05D008291 1.1e-30 137.5 173 50.9
FAN27G1167 Fragaria x ananassa HOM05D006618 ORTHO05D008291 1.5e-30 137.1 201 46.8
Gorai.007G131200 Gossypium raimondii HOM05D006618 ORTHO05D008291 1.5e-30 137.1 159 53.5
vmacro02504 Vaccinium macrocarpon HOM05D006618 ORTHO05D008291 2.6e-30 136.3 215 44.7
CARHR251610 Cardamine hirsuta HOM05D006618 ORTHO05D008291 3.3e-30 136.0 201 45.8
Cfa006056 Carpinus fangiana HOM05D006618 ORTHO05D008291 3.3e-30 136.0 208 46.2
Medtr7g108100 Medicago truncatula HOM05D006618 ORTHO05D008291 3.3e-30 136.0 174 53.4
PGSC0003DMG400024043 Solanum tuberosum HOM05D006618 ORTHO05D008291 3.3e-30 136.0 173 52.0
HanXRQChr15g0466141 Helianthus annuus HOM05D006618 ORTHO05D008291 7.4e-30 134.8 203 56.2
Thhalv10028994m.g Eutrema salsugineum HOM05D006618 ORTHO05D008291 9.7e-30 134.4 201 46.3
TWI12G0445 Tripterygium wilfordii HOM05D006618 ORTHO05D008291 1.7e-29 133.7 175 54.9
TAR362G0318 Trochodendron aralioides HOM05D006618 ORTHO05D008291 1.7e-29 133.7 185 50.3
BcaC01g06702 Brassica carinata HOM05D006618 ORTHO05D008291 2.8e-29 132.9 178 47.2
C03p37140 Brassica napus HOM05D006618 ORTHO05D008291 2.8e-29 132.9 178 47.2
Nitab4.5_0012299g0010 Nicotiana tabacum HOM05D006618 ORTHO05D008291 2.8e-29 132.9 178 51.1
Psat3g024440 Pisum sativum HOM05D006618 ORTHO05D008291 2.8e-29 132.9 174 57.5
AT4G03180 Arabidopsis thaliana HOM05D006618 ORTHO05D008291 3.7e-29 132.5 172 49.4
ECA247G1808 Erigeron canadensis HOM05D006618 ORTHO05D008291 6.3e-29 131.7 172 53.5
BolC3t16012H Brassica oleracea HOM05D006618 ORTHO05D008291 8.2e-29 131.3 178 46.6
AUR62034630 Chenopodium quinoa HOM05D006618 ORTHO05D008291 8.2e-29 131.3 212 48.1
AL6G49760 Arabidopsis lyrata HOM05D006618 ORTHO05D008291 1.4e-28 130.6 172 48.8
Nn3g21320 Nelumbo nucifera HOM05D006618 ORTHO05D008291 1.4e-28 130.6 160 55.6
Gohir.A11G117500 Gossypium hirsutum HOM05D006618 ORTHO05D008291 4.1e-28 129.0 194 48.5
Cc01_g20320 Coffea canephora HOM05D006618 ORTHO05D008291 6.9e-28 128.3 168 50.6
Oeu057561.4 Olea europaea HOM05D006618 ORTHO05D008008 6.9e-28 128.3 183 50.3
Lj1C37G5 Lonicera japonica HOM05D000143 ORTHO05D000072 1.2e-27 127.5 164 52.4
TPR.G32314 Trifolium pratense HOM05D006618 ORTHO05D008291 1.2e-27 127.5 215 47.9
MELO3C015900.2 Cucumis melo HOM05D006618 ORTHO05D008291 2.0e-27 126.7 214 46.3
CsaV3_7G028720 Cucumis sativus L. HOM05D006618 ORTHO05D008291 2.6e-27 126.3 204 48.0
SalBow3G3170 Salvia bowleyana HOM05D006618 ORTHO05D008291 4.5e-27 125.6 199 50.3
FAN15G0256 Fragaria x ananassa HOM05D006618 ORTHO05D008291 7.7e-27 124.8 200 45.5
Sp6g03210 Schrenkiella parvula HOM05D006618 ORTHO05D008291 1.0e-26 124.4 198 43.9
Haze_04826 Corylus avellana HOM05D006618 ORTHO05D008291 1.3e-26 124.0 248 40.7
RcHm_v2.0_Chr6g0292701 Rosa chinensis HOM05D006618 ORTHO05D008291 1.7e-26 123.6 200 45.0
Nitab4.5_0002093g0230 Nicotiana tabacum HOM05D006618 ORTHO05D008291 5.0e-26 122.1 187 49.2
QL12p024238 Quercus lobata HOM05D006618 ORTHO05D008291 5.0e-26 122.1 204 44.1
Thecc.01G291700 Theobroma cacao HOM05D006618 ORTHO05D008291 6.5e-26 121.7 202 48.0
Haze_04795 Corylus avellana HOM05D006618 ORTHO05D008291 1.1e-25 120.9 246 40.2
Lj1g0015584 Lotus japonicus HOM05D006618 ORTHO05D008291 5.5e-25 118.6 197 43.1
BcaB05g23692 Brassica carinata HOM05D006618 ORTHO05D008291 7.2e-25 118.2 176 44.9
Lalb_Chr18g0047451 Lupinus albus HOM05D006618 ORTHO05D008291 6.1e-24 115.2 172 47.1
GSVIVG01010994001 Vitis vinifera HOM05D006618 ORTHO05D008291 1.0e-23 114.4 129 57.4
ATR0706G074 Amborella trichopoda HOM05D006618 ORTHO05D008291 1.8e-23 113.6 173 49.1
BcaC03g16213 Brassica carinata HOM05D006618 ORTHO05D008291 1.8e-23 113.6 181 48.6
BolC2t10017H Brassica oleracea HOM05D006618 ORTHO05D008291 1.8e-23 113.6 181 48.6
Zm00001eb410530 Zea mays HOM05D006618 ORTHO05D008291 3.0e-23 112.8 159 49.7
A02p25130 Brassica napus HOM05D006618 ORTHO05D008291 3.3e-22 109.4 179 48.0
Ciclev10022357m.g Citrus clementina HOM05D006618 ORTHO05D008291 5.7e-22 108.6 204 43.1
C02p39890 Brassica napus HOM05D006618 ORTHO05D008291 7.4e-22 108.2 179 48.6
BraA02t07501Z Brassica rapa HOM05D006618 ORTHO05D008291 2.2e-21 106.7 179 48.0
Rhsim13G0016600 Rhododendron simsii HOM05D006618 ORTHO05D008291 3.7e-21 105.9 157 52.2
BcaB01g02511 Brassica carinata HOM05D006618 ORTHO05D008291 1.1e-20 104.4 174 44.8
Os12g0538100 Oryza sativa ssp. japonica HOM05D006618 ORTHO05D008291 1.6e-19 100.5 164 45.1
Zm00001eb137700 Zea mays HOM05D006618 ORTHO05D008291 1.6e-19 100.5 151 45.0
FAN20G2846 Fragaria x ananassa HOM05D006618 ORTHO05D008291 2.2e-18 96.7 161 46.0
Migut.D00152 Erythranthe guttata HOM05D006618 ORTHO05D008291 5.0e-18 95.5 215 40.0
HPP92_017865 Vanilla planifolia HOM05D006618 ORTHO05D008291 1.1e-17 94.4 178 45.5
Ca_09115_v3 Cicer arietinum L. HOM05D006618 ORTHO05D008291 1.5e-17 94.0 151 53.0
CANSAT25G1401 Cannabis sativa HOM05D006618 ORTHO05D008291 9.4e-17 91.3 201 42.8
Atru.chr5.1270 Acer truncatum HOM05D006618 ORTHO05D008291 1.2e-16 90.9 115 53.9
unitig_22.g5246 Utricularia gibba HOM05D006618 ORTHO05D008291 1.4e-15 87.4 161 49.1
MBI19_g13630_MAGBIO Magnolia biondii HOM05D006618 ORTHO05D008291 1.2e-14 84.3 200 38.5
arahy.Tifrunner.gnm1.ann1.160DKY Arachis hypogaea HOM05D006618 ORTHO05D008291 1.5e-14 84.0 151 43.0
Actinidia21075 Actinidia chinensis HOM05D006618 ORTHO05D008291 7.5e-14 81.6 49 85.7
arahy.Tifrunner.gnm1.ann1.1H6IZY Arachis hypogaea HOM05D006618 ORTHO05D008291 7.5e-14 81.6 153 41.2
Actinidia24851 Actinidia chinensis HOM05D006618 ORTHO05D008291 1.7e-13 80.5 122 45.9
Gohir.D11G122400 Gossypium hirsutum HOM05D006618 ORTHO05D008291 2.2e-13 80.1 116 47.4
SHI15557 Sapria himalayana HOM05D006618 ORTHO05D008291 4.5e-11 72.4 69 60.9
THA.LOC104827373 Tarenaya hassleriana HOM05D006618 ORTHO05D008291 5.9e-11 72.0 133 49.6
Mapoly0001s0215 Marchantia polymorpha HOM05D006618 ORTHO05D008291 5.0e-10 68.9 205 41.5
BcaB05g22921 Brassica carinata HOM05D001082 ORTHO05D008291 1.1e-09 67.8 141 44.7
AagrBONN_evm.TU.Sc2ySwM_117.1999 Anthoceros agrestis HOM05D006618 ORTHO05D008291 3.6e-08 62.8 63 54.0
SEGI_31360 Sequoiadendron giganteum HOM05D006618 ORTHO05D008291 8.0e-08 61.6 66 54.5
Cfa006024 Carpinus fangiana HOM05D006618 ORTHO05D008291 1.0e-07 61.2 70 47.1
arahy.Tifrunner.gnm1.ann1.MTA467 Arachis hypogaea HOM05D006618 ORTHO05D008291 8.8e-07 58.2 154 37.7
arahy.Tifrunner.gnm1.ann1.915FC2 Arachis hypogaea HOM05D006618 ORTHO05D008291 5.7e-06 55.5 155 36.8


User provided reference genes

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