Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 5.3e-31 137.1 72 100.0
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 1.6e-16 89.0 64 75.0
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 1.1e-15 86.3 63 73.0
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 1.8e-15 85.5 53 79.2
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 3.1e-15 84.7 68 67.6
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 3.1e-15 84.7 74 63.5
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 4.1e-15 84.3 65 69.2
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 5.3e-15 84.0 63 69.8
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 5.3e-15 84.0 69 69.6
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 9.0e-15 83.2 68 69.1
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 9.0e-15 83.2 70 67.1
Eucgr.I00239 Eucalyptus grandis HOM05D007503 ORTHO05D009487 1.2e-14 82.8 65 66.2
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 1.2e-14 82.8 62 72.6
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 1.5e-14 82.4 70 67.1
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 1.5e-14 82.4 70 67.1
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 1.5e-14 82.4 70 67.1
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 2.0e-14 82.0 58 70.7
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 2.0e-14 82.0 58 70.7
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 2.6e-14 81.6 60 71.7
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 2.6e-14 81.6 54 75.9
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 3.4e-14 81.3 64 67.2
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 3.4e-14 81.3 62 67.7
Duzib211G0566 Durio zibethinus HOM05D007503 ORTHO05D009487 3.4e-14 81.3 64 65.6
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 3.4e-14 81.3 66 66.7
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 4.5e-14 80.9 73 65.8
Thecc.09G340100 Theobroma cacao HOM05D007503 ORTHO05D009487 4.5e-14 80.9 51 78.4
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 5.9e-14 80.5 59 67.8
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 7.7e-14 80.1 64 65.6
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 1.0e-13 79.7 65 64.6
COL.COLO4_13441 Corchorus olitorius HOM05D007503 ORTHO05D009487 1.3e-13 79.3 71 64.8
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 1.3e-13 79.3 65 64.6
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 1.7e-13 79.0 53 77.4
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 2.2e-13 78.6 63 66.7
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 2.2e-13 78.6 57 70.2
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 2.9e-13 78.2 59 67.8
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 3.8e-13 77.8 55 67.3
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 3.8e-13 77.8 66 62.1
Os08g0528601 Oryza sativa ssp. japonica HOM05D007503 ORTHO05D009487 5.0e-13 77.4 64 65.6
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 5.0e-13 77.4 66 65.2
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 6.5e-13 77.0 59 67.8
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 1.1e-12 76.3 68 61.8
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 1.1e-12 76.3 62 64.5
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 1.1e-12 76.3 53 69.8
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 1.4e-12 75.9 57 66.7
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 1.9e-12 75.5 57 66.7
Gohir.A11G170200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 2.5e-12 75.1 62 64.5
Gohir.D11G177200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 2.5e-12 75.1 62 64.5
Gorai.007G189300 Gossypium raimondii HOM05D007503 ORTHO05D009487 2.5e-12 75.1 62 64.5
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 2.5e-12 75.1 65 61.5
THA.LOC104815587 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 2.5e-12 75.1 63 65.1
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 3.2e-12 74.7 53 69.8
THA.LOC104822606 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 3.2e-12 74.7 62 64.5
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 4.2e-12 74.3 68 60.3
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 4.2e-12 74.3 53 67.9
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 4.2e-12 74.3 57 66.7
CDE05G2177 Ceratophyllum demersum HOM05D007503 ORTHO05D009487 5.5e-12 73.9 58 63.8
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 7.2e-12 73.6 68 60.3
BcaC09g48410 Brassica carinata HOM05D007503 ORTHO05D009487 7.2e-12 73.6 68 58.8
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 7.2e-12 73.6 68 58.8
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 7.2e-12 73.6 68 58.8
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 7.2e-12 73.6 70 57.1
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 9.4e-12 73.2 57 64.9
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 1.2e-11 72.8 68 60.3
C05p52900 Brassica napus HOM05D007503 ORTHO05D009487 1.2e-11 72.8 68 60.3
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 1.2e-11 72.8 68 60.3
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 1.2e-11 72.8 68 60.3
Sp3g12730 Schrenkiella parvula HOM05D007503 ORTHO05D009487 1.2e-11 72.8 68 58.8
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 1.2e-11 72.8 61 65.6
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 1.2e-11 72.8 61 65.6
BcaC05g29084 Brassica carinata HOM05D007503 ORTHO05D009487 1.6e-11 72.4 68 60.3
Pp3c11_25150 Physcomitrium patens HOM05D007503 ORTHO05D009487 3.6e-11 71.2 56 64.3
ClCG01G008330 Citrullus lanatus HOM05D007503 ORTHO05D009487 4.6e-11 70.9 66 62.1
CsaV3_5G020250 Cucumis sativus L. HOM05D007503 ORTHO05D009487 4.6e-11 70.9 66 60.6
AT3G14430 Arabidopsis thaliana HOM05D007503 ORTHO05D009487 6.1e-11 70.5 68 57.4
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 6.1e-11 70.5 64 60.9
Zm00001eb036330 Zea mays HOM05D007503 ORTHO05D009487 6.1e-11 70.5 67 58.2
Carub.0003s1415 Capsella rubella HOM05D007503 ORTHO05D009487 7.9e-11 70.1 68 55.9
CARHR089340 Cardamine hirsuta HOM05D007503 ORTHO05D009487 1.0e-10 69.7 66 57.6
MELO3C025073.2 Cucumis melo HOM05D007503 ORTHO05D009487 1.4e-10 69.3 66 59.1
Zm00001eb175060 Zea mays HOM05D007503 ORTHO05D009487 1.4e-10 69.3 57 61.4
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 1.8e-10 68.9 61 63.9
AL3G26810 Arabidopsis lyrata HOM05D007503 ORTHO05D009487 2.3e-10 68.6 67 58.2
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 2.3e-10 68.6 64 59.4
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 3.9e-10 67.8 68 55.9
Sed0018329 Sechium edule HOM05D007503 ORTHO05D009487 6.7e-10 67.0 66 56.1
Sabra14G0077600 Salix brachista HOM05D007503 ORTHO05D009487 2.5e-09 65.1 65 55.4
Aa31LG8G1690 Aethionema arabicum HOM05D007503 ORTHO05D009487 4.3e-09 64.3 67 52.2
Pp3c7_7140 Physcomitrium patens HOM05D007503 ORTHO05D009487 4.3e-09 64.3 59 57.6
Aa31LG10G1620 Aethionema arabicum HOM05D007503 ORTHO05D009487 1.8e-07 58.9 64 51.6
Sabra02G0134700 Salix brachista HOM05D007503 ORTHO05D009487 4.1e-07 57.8 54 50.0
Lsat_1_v5_gn_9_48861 Lactuca sativa HOM05D007503 ORTHO05D009487 5.3e-07 57.4 53 62.3
HPP92_021450 Vanilla planifolia HOM05D007503 ORTHO05D009487 6.9e-07 57.0 48 66.7
Cpa.g.c46349 Carica papaya HOM05D007503 ORTHO05D009487 9.1e-07 56.6 65 52.3
Cpa.g.sc44.91 Carica papaya HOM05D007503 ORTHO05D009487 9.1e-07 56.6 65 52.3
HanXRQChr14g0445891 Helianthus annuus HOM05D007503 ORTHO05D009487 9.1e-07 56.6 48 66.7
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 2.6e-06 55.1 50 68.0
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 3.4e-06 54.7 49 61.2


User provided reference genes

Program Settings