Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1413 Punica granatum HOM05D006516 ORTHO05D008083 2.3e-177 625.5 332 100.0
Eucgr.I00111 Eucalyptus grandis HOM05D006516 ORTHO05D008083 3.5e-114 415.6 341 67.7
Prupe.4G278200 Prunus persica HOM05D006516 ORTHO05D008083 2.0e-109 399.8 336 70.5
CSS0037144 Camellia sinensis var. sinensis HOM05D006516 ORTHO05D008083 3.4e-109 399.1 337 68.8
RcHm_v2.0_Chr2g0122781 Rosa chinensis HOM05D006516 ORTHO05D008083 5.0e-108 395.2 332 69.9
Atru.chr4.1049 Acer truncatum HOM05D006516 ORTHO05D008083 9.3e-107 391.0 331 66.2
TAR628G0816 Trochodendron aralioides HOM05D006516 ORTHO05D008083 1.2e-106 390.6 305 72.5
MD00G1064700 Malus domestica HOM05D006516 ORTHO05D008083 4.6e-106 388.7 343 67.1
Potri.007G099900 Populus trichocarpa HOM05D006516 ORTHO05D008083 1.0e-105 387.5 354 65.8
Sabra07G0082800 Salix brachista HOM05D006516 ORTHO05D008083 1.3e-105 387.1 355 66.2
Solyc04g015480.3 Solanum lycopersicum HOM05D006516 ORTHO05D008083 1.8e-105 386.7 292 69.5
Sopen04g007550 Solanum pennellii HOM05D006516 ORTHO05D008083 2.3e-105 386.3 332 64.2
CsaV3_2G019760 Cucumis sativus L. HOM05D006516 ORTHO05D008083 9.7e-104 380.9 280 73.9
CiPaw.03G117200 Carya illinoinensis HOM05D006516 ORTHO05D008083 1.3e-103 380.6 339 67.6
MELO3C023197.2 Cucumis melo HOM05D006516 ORTHO05D008083 6.3e-103 378.3 280 74.6
Dinv30343 Davidia involucrata HOM05D006516 ORTHO05D008083 1.1e-102 377.5 222 85.1
Thecc.01G139400 Theobroma cacao HOM05D006516 ORTHO05D008083 1.4e-102 377.1 335 68.4
TWI31G0808 Tripterygium wilfordii HOM05D006516 ORTHO05D008083 1.8e-102 376.7 239 77.4
CANSAT01G0949 Cannabis sativa HOM05D006516 ORTHO05D008083 3.1e-102 375.9 309 64.7
FAN26G1784 Fragaria x ananassa HOM05D006516 ORTHO05D008083 1.2e-101 374.0 240 79.2
Manes.12G147400 Manihot esculenta HOM05D006516 ORTHO05D008083 3.4e-101 372.5 342 67.0
FAN28G2638 Fragaria x ananassa HOM05D006516 ORTHO05D008083 7.7e-101 371.3 240 78.3
Oeu011021.1 Olea europaea HOM05D006516 ORTHO05D008083 1.0e-100 370.9 259 74.9
Ciclev10001875m.g Citrus clementina HOM05D006516 ORTHO05D008083 3.8e-100 369.0 231 81.4
THA.LOC104804401 Tarenaya hassleriana HOM05D006516 ORTHO05D008083 1.9e-99 366.7 253 73.9
Cpa.g.sc37.17 Carica papaya HOM05D006516 ORTHO05D008083 1.2e-98 364.0 326 69.0
AL7G18070 Arabidopsis lyrata HOM05D006516 ORTHO05D008083 1.6e-98 363.6 232 77.6
Cfa002190 Carpinus fangiana HOM05D006516 ORTHO05D008083 1.6e-98 363.6 429 54.1
Lsat_1_v5_gn_5_69121 Lactuca sativa HOM05D006516 ORTHO05D008083 3.6e-98 362.5 214 83.2
AT4G33480 Arabidopsis thaliana HOM05D006516 ORTHO05D008083 4.7e-98 362.1 232 77.2
Haze_25362 Corylus avellana HOM05D006516 ORTHO05D008083 4.7e-98 362.1 290 69.7
MSTRG.23495 Avicennia marina HOM05D006516 ORTHO05D008083 6.1e-98 361.7 221 80.1
HanXRQChr15g0469261 Helianthus annuus HOM05D006516 ORTHO05D008083 6.1e-98 361.7 230 78.3
CARHR241560 Cardamine hirsuta HOM05D006516 ORTHO05D008083 7.9e-98 361.3 249 73.5
Gohir.D04G033500 Gossypium hirsutum HOM05D006516 ORTHO05D008083 1.0e-97 360.9 338 65.1
Gohir.A05G381800 Gossypium hirsutum HOM05D006516 ORTHO05D008083 3.0e-97 359.4 338 64.8
Migut.H00817 Erythranthe guttata HOM05D006516 ORTHO05D008083 3.9e-97 359.0 224 79.5
Sed0013830 Sechium edule HOM05D006516 ORTHO05D008083 6.7e-97 358.2 214 81.8
AUR62000533 Chenopodium quinoa HOM05D006516 ORTHO05D008083 8.8e-97 357.8 242 74.0
EL10Ac4g09645 Beta vulgaris HOM05D006516 ORTHO05D008083 2.0e-96 356.7 233 73.0
BcaC09g52164 Brassica carinata HOM05D006516 ORTHO05D008083 2.0e-96 356.7 235 76.6
QL10p040847 Quercus lobata HOM05D006516 ORTHO05D008083 2.0e-96 356.7 220 82.7
Carub.0007s0699 Capsella rubella HOM05D006516 ORTHO05D008083 4.4e-96 355.5 232 75.0
PSO170G3530 Papaver somniferum HOM05D006516 ORTHO05D008083 9.7e-96 354.4 222 78.4
ECA233G3512 Erigeron canadensis HOM05D000595 ORTHO05D006275 1.7e-95 353.6 337 63.5
FAN23G2617 Fragaria x ananassa HOM05D006516 ORTHO05D008083 2.8e-95 352.8 238 76.9
A01p04790 Brassica napus HOM05D006516 ORTHO05D008083 3.7e-95 352.4 233 75.5
Glyma.05G194700 Glycine max HOM05D006516 ORTHO05D008083 3.7e-95 352.4 332 61.4
C01p05200 Brassica napus HOM05D006516 ORTHO05D008083 1.4e-94 350.5 248 71.0
FAN19G1952 Fragaria x ananassa HOM05D006516 ORTHO05D008083 1.8e-94 350.1 216 81.0
Sc06g0006730 Simmondsia chinensis HOM05D006516 ORTHO05D008083 1.8e-94 350.1 210 79.0
BraA01t00462Z Brassica rapa HOM05D006516 ORTHO05D008083 2.4e-94 349.7 249 71.5
arahy.Tifrunner.gnm1.ann1.YP7URC Arachis hypogaea HOM05D006516 ORTHO05D008083 4.1e-94 349.0 340 59.1
Cc02_g33920 Coffea canephora HOM05D006516 ORTHO05D008083 6.9e-94 348.2 205 85.4
CDE08G1595 Ceratophyllum demersum HOM05D006516 ORTHO05D008083 2.0e-93 346.7 219 74.9
Nitab4.5_0001663g0100 Nicotiana tabacum HOM05D006516 ORTHO05D008083 2.6e-93 346.3 360 57.2
DCAR_019988 Daucus carota HOM05D006516 ORTHO05D008083 5.0e-92 342.0 309 64.4
arahy.Tifrunner.gnm1.ann1.8KJ0MH Arachis hypogaea HOM05D006516 ORTHO05D008083 4.2e-91 339.0 330 58.5
Aqoxy6G00267 Aquilegia oxysepala HOM05D006516 ORTHO05D008083 1.6e-90 337.0 214 74.8
PGSC0003DMG400027234 Solanum tuberosum HOM05D006516 ORTHO05D008083 3.6e-90 335.9 368 54.9
BolC1t00500H Brassica oleracea HOM05D006516 ORTHO05D008021 6.1e-90 335.1 238 70.6
Actinidia20043 Actinidia chinensis HOM05D006516 ORTHO05D008083 1.8e-89 333.6 330 60.0
Actinidia06588 Actinidia chinensis HOM05D006516 ORTHO05D008083 3.9e-89 332.4 330 61.2
Lj4g0011477 Lotus japonicus HOM05D006516 ORTHO05D008083 8.8e-89 331.3 223 75.8
Lalb_Chr13g0296721 Lupinus albus HOM05D006516 ORTHO05D008083 8.8e-89 331.3 245 69.0
unitig_899.g15157 Utricularia gibba HOM05D006516 ORTHO05D008083 1.5e-88 330.5 205 74.1
GSVIVG01022337001 Vitis vinifera HOM05D006516 ORTHO05D008083 2.8e-87 326.2 199 83.4
PSO528G0185 Papaver somniferum HOM05D006516 ORTHO05D008083 7.0e-86 321.6 197 80.7
Duzib147G1587 Durio zibethinus HOM05D006516 ORTHO05D008083 2.0e-85 320.1 345 58.3
SGA_v2.0_scaffold54G19604 Striga asiatica HOM05D006516 ORTHO05D008083 2.0e-85 320.1 210 72.4
PSO063G7430 Papaver somniferum HOM05D006516 ORTHO05D008083 3.5e-85 319.3 197 80.7
Hund07224 Selenicereus undatus HOM05D006516 ORTHO05D008083 1.1e-83 314.3 260 60.4
Medtr8g094200 Medicago truncatula HOM05D006516 ORTHO05D008083 1.9e-83 313.5 251 62.9
Lalb_Chr08g0238111 Lupinus albus HOM05D006516 ORTHO05D008083 3.2e-83 312.8 217 73.3
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 1.2e-82 310.8 331 52.0
CAN.G676.43 Capsicum annuum HOM05D006516 ORTHO05D008083 2.7e-82 309.7 219 73.1
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 3.6e-82 309.3 187 79.1
FvH4_1g25120 Fragaria vesca HOM05D006516 ORTHO05D008083 4.7e-82 308.9 173 86.7
Thhalv10025682m.g Eutrema salsugineum HOM05D006516 ORTHO05D008083 8.0e-82 308.1 205 74.6
Gorai.012G037800 Gossypium raimondii HOM05D006516 ORTHO05D008083 1.4e-81 307.4 300 62.3
arahy.Tifrunner.gnm1.ann1.I5MJF2 Arachis hypogaea HOM05D006516 ORTHO05D008083 3.3e-80 302.8 216 70.8
COL.COLO4_12072 Corchorus olitorius HOM05D006516 ORTHO05D008083 3.3e-80 302.8 345 54.8
Ca_17618_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 1.7e-79 300.4 201 71.1
Lj1g0010918 Lotus japonicus HOM05D006516 ORTHO05D008083 3.7e-79 299.3 212 72.6
AUR62006880 Chenopodium quinoa HOM05D006516 ORTHO05D008083 5.3e-78 295.4 333 50.5
arahy.Tifrunner.gnm1.ann1.5F6SWA Arachis hypogaea HOM05D006516 ORTHO05D008083 7.0e-78 295.0 229 65.5
Zm00001eb434490 Zea mays HOM05D006516 ORTHO05D008083 2.0e-77 293.5 229 62.0
Glyma.06G156800 Glycine max HOM05D006516 ORTHO05D008083 2.7e-77 293.1 217 71.4
Psat5g086920 Pisum sativum HOM05D006516 ORTHO05D008083 7.7e-77 291.6 213 69.0
VMungo1309G1214 Vigna mungo HOM05D006516 ORTHO05D008083 1.5e-75 287.3 217 71.0
TPR.G37339 Trifolium pratense HOM05D006516 ORTHO05D008083 3.0e-73 279.6 207 65.2
Psat7g044240 Pisum sativum HOM05D006516 ORTHO05D008083 6.3e-71 271.9 331 48.0
CiPaw.04G078600 Carya illinoinensis HOM05D006516 ORTHO05D008083 1.1e-67 261.2 343 53.4
Medtr3g096860 Medicago truncatula HOM05D006516 ORTHO05D008083 3.0e-65 253.1 187 66.8
Ca_16991_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 1.2e-64 251.1 252 55.6
Ca_17019_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 1.2e-64 251.1 252 55.6
Phvul.009G153500 Phaseolus vulgaris HOM05D006516 ORTHO05D008083 1.4e-62 244.2 179 70.9
ATR0138G020 Amborella trichopoda HOM05D006516 ORTHO05D008083 3.3e-59 233.0 215 55.3
Peaxi162Scf01713g00018 Petunia axillaris HOM05D006516 ORTHO05D008083 4.3e-59 232.6 202 61.4
Nitab4.5_0000733g0220 Nicotiana tabacum HOM05D006516 ORTHO05D008083 2.8e-58 229.9 290 48.3
TPR.G33574 Trifolium pratense HOM05D006516 ORTHO05D008083 2.8e-58 229.9 168 67.3
Mapoly0149s0016 Marchantia polymorpha HOM05D006516 ORTHO05D008083 7.5e-56 221.9 213 51.2
Nn1g08886 Nelumbo nucifera HOM05D006516 ORTHO05D008083 5.4e-54 215.7 212 57.5
Pp3c3_32640 Physcomitrium patens HOM05D006516 ORTHO05D008083 9.2e-54 214.9 215 52.1
Sp7g31210 Schrenkiella parvula HOM05D006516 ORTHO05D008083 1.7e-52 210.7 127 80.3
AagrBONN_evm.TU.Sc2ySwM_369.382 Anthoceros agrestis HOM05D006516 ORTHO05D008083 5.0e-52 209.1 248 46.0
Aa31sc146G60 Aethionema arabicum HOM05D006516 ORTHO05D008083 8.6e-52 208.4 165 67.3
ClCG02G000090 Citrullus lanatus HOM05D006516 ORTHO05D008083 2.9e-47 193.4 217 56.2
MBI06_g45441_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 9.2e-46 188.3 302 43.7
Rhsim10G0127700 Rhododendron simsii HOM05D006516 ORTHO05D008083 1.6e-45 187.6 196 50.0
Nn1g08902 Nelumbo nucifera HOM05D006516 ORTHO05D008083 2.7e-37 160.2 91 86.8
Aa31sc146G50 Aethionema arabicum HOM05D006516 ORTHO05D008083 1.9e-35 154.1 91 81.3
Hma1.2p1_1551F.1_g290160 Hydrangea macrophylla HOM05D006516 ORTHO05D008083 1.6e-34 151.0 84 83.3
CBR_g51961 Chara braunii HOM05D006516 ORTHO05D008083 3.1e-25 120.2 234 32.9
Peaxi162Scf01713g00017 Petunia axillaris HOM05D006516 ORTHO05D008083 1.1e-22 111.7 70 84.3
Nn1g08901 Nelumbo nucifera HOM05D003028 ORTHO05D003465 1.2e-21 108.2 154 41.6
Sp7g31200 Schrenkiella parvula HOM05D006516 ORTHO05D008083 2.5e-19 100.5 63 82.5
PRCOL_00004760 Prasinoderma coloniale HOM05D006516 ORTHO05D008083 2.8e-18 97.1 167 33.5
MCO05G028 Micromonas commoda HOM05D006516 ORTHO05D008083 9.0e-17 92.0 177 33.3
COL.COLO4_30311 Corchorus olitorius HOM05D000221 ORTHO05D008083 3.0e-12 77.0 47 83.0
MBI06_g33106_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 3.0e-12 77.0 76 53.9
FAN28G1699 Fragaria x ananassa HOM05D006516 ORTHO05D008083 1.6e-10 71.2 44 84.1
ATR0138G010 Amborella trichopoda HOM05D006516 ORTHO05D008083 1.4e-06 58.2 59 55.9


User provided reference genes

Program Settings