Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 6.3e-302 1040.0 542 100.0
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 1.7e-219 766.1 523 75.0
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.4e-216 755.7 544 73.2
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.4e-216 755.7 544 73.2
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 6.9e-216 754.2 544 72.8
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 9.0e-216 753.8 544 72.8
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 9.6e-210 733.8 545 70.8
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 6.2e-209 731.1 543 69.4
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 6.9e-208 727.6 524 71.6
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.5e-207 726.5 524 71.6
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.0e-207 726.1 506 73.3
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 4.5e-207 724.9 506 73.7
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 5.8e-207 724.5 506 73.5
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 7.6e-207 724.2 504 72.6
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 4.9e-206 721.5 520 71.7
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 3.2e-205 718.8 539 69.6
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 2.1e-204 716.1 545 69.7
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 6.0e-204 714.5 536 69.0
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.9e-202 709.5 539 69.6
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 1.9e-202 709.5 543 68.9
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 5.6e-202 708.0 539 69.6
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.6e-202 708.0 539 69.6
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 6.2e-201 704.5 543 67.6
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 1.4e-200 703.4 525 70.3
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 5.3e-200 701.4 583 64.2
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 1.2e-199 700.3 527 69.4
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.5e-199 699.9 519 70.3
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 3.4e-199 698.7 523 69.2
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 8.4e-198 694.1 536 68.1
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 1.1e-197 693.7 524 68.3
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.9e-197 693.0 540 67.8
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 4.6e-196 688.3 520 69.6
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 6.0e-196 688.0 525 67.8
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.8e-193 679.1 525 67.2
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 2.8e-193 679.1 527 67.0
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 4.8e-193 678.3 525 67.6
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 1.4e-192 676.8 544 65.4
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 3.1e-192 675.6 541 64.9
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 1.5e-191 673.3 500 68.8
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 1.0e-190 670.6 539 64.4
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 3.8e-190 668.7 538 64.3
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 2.5e-189 666.0 549 63.9
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 4.2e-189 665.2 521 67.8
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 3.5e-188 662.1 557 63.9
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.5e-186 656.8 551 64.1
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 9.7e-186 654.1 517 66.0
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 9.7e-186 654.1 505 67.5
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 2.2e-185 652.9 527 66.0
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 1.1e-184 650.6 530 65.7
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 2.6e-183 646.0 524 63.9
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 3.4e-183 645.6 447 75.2
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 5.0e-182 641.7 501 67.1
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 1.9e-181 639.8 517 65.0
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 1.7e-177 626.7 544 64.7
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 4.5e-175 618.6 552 61.2
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 2.2e-174 616.3 545 60.7
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 1.9e-173 613.2 523 62.7
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 7.2e-173 611.3 527 61.9
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 9.4e-173 610.9 521 63.7
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 1.0e-171 607.4 569 61.5
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 4.4e-170 602.1 520 60.8
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 2.6e-167 592.8 562 57.3
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 4.0e-163 578.9 525 60.4
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 7.5e-162 574.7 513 58.9
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 5.9e-159 565.1 509 59.5
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 6.1e-156 555.1 548 57.7
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.1e-152 542.3 510 57.3
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 9.1e-152 541.2 440 62.7
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 3.5e-151 539.3 518 57.3
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 2.2e-150 536.6 406 70.0
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.4e-147 527.3 503 57.7
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 6.8e-147 525.0 503 57.3
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 1.6e-143 513.8 408 66.9
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.9e-141 506.9 572 53.3
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 1.3e-134 484.2 443 57.1
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 5.6e-133 478.8 493 50.7
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 2.3e-131 473.4 338 73.7
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 2.9e-129 466.5 507 53.5
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.1e-125 454.5 343 65.6
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 5.8e-122 442.2 352 63.6
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-117 427.9 452 53.8
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 9.6e-109 398.3 389 56.6
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.6e-95 354.4 401 54.9
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 2.3e-94 350.5 456 46.5
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 4.6e-87 326.2 472 43.0
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 3.8e-81 306.6 462 41.1
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 6.5e-81 305.8 465 41.7
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.0e-78 298.5 426 44.4
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.5e-77 293.9 429 43.4
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 7.4e-77 292.4 459 40.1
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 1.3e-76 291.6 465 40.4
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.8e-76 290.4 456 41.0
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 4.8e-76 289.7 433 41.6
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 6.3e-76 289.3 474 39.2
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 6.3e-76 289.3 512 39.5
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 9.0e-75 285.4 527 40.2
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.0e-73 282.0 291 56.0
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 1.3e-73 281.6 465 41.3
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.3e-73 281.6 418 42.1
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 2.2e-73 280.8 203 70.0
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 6.5e-73 279.3 425 41.2
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.9e-72 277.7 493 40.8
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 7.9e-71 272.3 475 38.7
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.5e-69 268.1 426 40.1
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 7.4e-69 265.8 446 39.9
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.3e-68 265.0 471 39.5
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 1.6e-68 264.6 425 39.8
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.2e-68 264.2 441 39.5
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 2.8e-68 263.8 446 39.9
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.8e-68 263.1 425 40.9
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 6.3e-68 262.7 425 39.8
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.8e-67 261.2 422 40.0
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.1e-67 260.0 369 44.7
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 3.4e-66 256.9 445 40.0
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 7.7e-66 255.8 439 40.3
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 5.0e-65 253.1 443 39.5
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-64 251.9 441 38.5
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 2.5e-64 250.8 441 38.3
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 5.5e-64 249.6 441 38.1
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 7.9e-63 245.7 434 38.0
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 6.7e-62 242.7 492 35.4
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 7.4e-61 239.2 480 37.5
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 2.4e-59 234.2 419 38.2
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 3.8e-57 226.9 442 36.0
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 1.4e-56 224.9 391 39.9
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.2e-56 222.6 396 38.4
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 1.6e-55 221.5 385 35.6
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 5.2e-54 216.5 430 33.7
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 3.3e-53 213.8 168 64.9
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 1.4e-51 208.4 423 36.4
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.5e-48 197.6 413 35.8
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 7.0e-43 179.5 274 39.8
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 7.7e-42 176.0 393 34.6
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 5.0e-41 173.3 406 33.7
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.9e-40 171.4 270 40.7
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 5.5e-40 169.9 152 55.3
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 3.4e-37 160.6 219 44.3
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.8e-36 156.8 266 40.6
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 2.7e-34 151.0 100 75.0
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 1.2e-31 142.1 189 46.6
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 8.0e-31 139.4 238 36.6
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 2.0e-29 134.8 110 58.2
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.7e-28 131.7 162 49.4
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 2.9e-25 120.9 170 41.8
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 3.8e-25 120.6 137 51.8
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.0e-22 112.5 259 35.9
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.0e-22 110.5 146 47.9
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 8.9e-22 109.4 166 38.0
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.4e-21 107.5 107 55.1
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 3.4e-21 107.5 166 37.3
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.3e-20 105.5 58 86.2
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 4.1e-19 100.5 140 43.6
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-18 99.0 143 43.4
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.0e-17 95.9 120 41.7
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 1.0e-17 95.9 316 28.8
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.1e-16 92.4 74 64.9
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.5e-16 91.3 87 56.3
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 2.5e-16 91.3 65 61.5
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 4.3e-16 90.5 111 50.5
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 7.3e-16 89.7 341 26.7
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.8e-14 85.1 315 27.6
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 4.0e-14 84.0 56 73.2
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 4.0e-14 84.0 80 53.8
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 1.5e-13 82.0 112 41.1
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.4e-13 80.5 115 40.0
Thhalv10015673m.g Eutrema salsugineum HOM05D003798 ORTHO05D023659 9.8e-13 79.3 332 26.2
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 9.8e-13 79.3 70 57.1
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 2.9e-12 77.8 73 60.3
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 3.7e-12 77.4 80 51.2
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 2.4e-11 74.7 85 49.4
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 4.1e-11 73.9 106 42.5
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 1.6e-10 72.0 61 59.0
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 2.0e-10 71.6 60 58.3
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 2.0e-10 71.6 133 31.6
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 4.6e-10 70.5 186 33.9
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.7e-09 68.6 206 29.1
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.3e-09 68.2 83 47.0
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 1.5e-08 65.5 145 35.9
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 2.8e-07 61.2 125 28.8
Medtr7g094400 Medicago truncatula HOM05D003798 ORTHO05D004652 1.8e-06 58.5 42 61.9
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.0e-06 57.4 49 57.1


User provided reference genes

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