Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1365 Punica granatum HOM05D007627 ORTHO05D009640 1.6e-40 169.1 91 100.0
Atru.chr5.1007 Acer truncatum HOM05D007627 ORTHO05D009640 1.9e-22 109.0 94 67.0
Sed0009470 Sechium edule HOM05D007627 ORTHO05D009640 2.2e-21 105.5 91 67.0
RcHm_v2.0_Chr7g0241611 Rosa chinensis HOM05D007627 ORTHO05D009640 2.8e-21 105.1 79 68.4
CiPaw.07G117000 Carya illinoinensis HOM05D007627 ORTHO05D009640 4.8e-21 104.4 91 63.7
MD03G1295800 Malus domestica HOM05D007627 ORTHO05D009640 4.8e-21 104.4 93 63.4
Manes.05G003000 Manihot esculenta HOM05D007627 ORTHO05D009640 4.8e-21 104.4 94 63.8
Ciclev10023058m.g Citrus clementina HOM05D007627 ORTHO05D009640 8.2e-21 103.6 84 65.5
CsaV3_1G045260 Cucumis sativus L. HOM05D007627 ORTHO05D009640 1.1e-20 103.2 80 70.0
Cfa005805 Carpinus fangiana HOM05D007627 ORTHO05D009640 4.1e-20 101.3 83 65.1
Eucgr.H01048 Eucalyptus grandis HOM05D007627 ORTHO05D009640 4.1e-20 101.3 93 61.3
QL02p088799 Quercus lobata HOM05D007627 ORTHO05D009640 5.3e-20 100.9 91 62.6
MELO3C010153.2 Cucumis melo HOM05D007627 ORTHO05D009640 6.9e-20 100.5 80 67.5
Nitab4.5_0001592g0100 Nicotiana tabacum HOM05D007627 ORTHO05D009640 1.2e-19 99.8 89 64.0
Haze_05035 Corylus avellana HOM05D007627 ORTHO05D009640 1.5e-19 99.4 83 66.3
ClCG10G011370 Citrullus lanatus HOM05D007627 ORTHO05D009640 2.6e-19 98.6 91 60.4
Prupe.8G271600 Prunus persica HOM05D007627 ORTHO05D009640 3.4e-19 98.2 93 61.3
CAN.G134.101 Capsicum annuum HOM05D007627 ORTHO05D009640 5.9e-19 97.4 89 62.9
FAN25G0556 Fragaria x ananassa HOM05D007627 ORTHO05D009640 5.9e-19 97.4 94 60.6
QL12p020023 Quercus lobata HOM05D007627 ORTHO05D009640 1.3e-18 96.3 92 60.9
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 1.7e-18 95.9 76 68.4
CANSAT78G1399 Cannabis sativa HOM05D007627 ORTHO05D009640 2.2e-18 95.5 94 60.6
FAN16G0578 Fragaria x ananassa HOM05D007627 ORTHO05D009640 2.9e-18 95.1 79 64.6
Nitab4.5_0012228g0040 Nicotiana tabacum HOM05D007627 ORTHO05D009640 5.0e-18 94.4 89 62.9
Thecc.01G312700 Theobroma cacao HOM05D007627 ORTHO05D009640 5.0e-18 94.4 92 60.9
Cc02_g30590 Coffea canephora HOM05D007627 ORTHO05D009640 6.5e-18 94.0 88 59.1
FvH4_3g25590 Fragaria vesca HOM05D007627 ORTHO05D009640 6.5e-18 94.0 79 64.6
FAN11G3818 Fragaria x ananassa HOM05D007627 ORTHO05D009640 6.5e-18 94.0 79 64.6
FAN21G2770 Fragaria x ananassa HOM05D007627 ORTHO05D009640 6.5e-18 94.0 79 64.6
Actinidia21001 Actinidia chinensis HOM05D007627 ORTHO05D009640 1.4e-17 92.8 81 61.7
Cfa005807 Carpinus fangiana HOM05D007627 ORTHO05D009640 1.4e-17 92.8 83 60.2
Lalb_Chr04g0257421 Lupinus albus HOM05D007627 ORTHO05D009640 1.4e-17 92.8 81 64.2
Glyma.18G296500 Glycine max HOM05D007627 ORTHO05D009640 2.5e-17 92.0 91 61.5
Lalb_Chr10g0091241 Lupinus albus HOM05D007627 ORTHO05D009640 2.5e-17 92.0 84 64.3
Dinv33113 Davidia involucrata HOM05D000361 ORTHO05D005006 3.2e-17 91.7 90 58.9
VMungo1383G2294 Vigna mungo HOM05D007627 ORTHO05D009640 3.2e-17 91.7 82 62.2
Solyc01g097360.4 Solanum lycopersicum HOM05D007627 ORTHO05D009640 4.2e-17 91.3 87 60.9
Peaxi162Scf00282g00336 Petunia axillaris HOM05D007627 ORTHO05D009640 5.5e-17 90.9 87 62.1
SalBow8G4146 Salvia bowleyana HOM05D007627 ORTHO05D009640 5.5e-17 90.9 90 55.6
Sopen01g041030 Solanum pennellii HOM05D007627 ORTHO05D009640 1.6e-16 89.4 87 59.8
TAR381G1624 Trochodendron aralioides HOM05D007627 ORTHO05D009640 2.7e-16 88.6 90 56.7
MSTRG.21216 Avicennia marina HOM05D007627 ORTHO05D009640 3.6e-16 88.2 86 54.7
Phvul.008G006000 Phaseolus vulgaris HOM05D007627 ORTHO05D009640 6.1e-16 87.4 95 56.8
Potri.014G121300 Populus trichocarpa HOM05D007627 ORTHO05D009640 7.9e-16 87.0 83 61.4
CSS0016321 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 3.0e-15 85.1 91 54.9
CSS0031687 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 3.0e-15 85.1 91 54.9
Rhsim01G0290400 Rhododendron simsii HOM05D007627 ORTHO05D009640 3.0e-15 85.1 90 55.6
Cpa.g.sc18.36 Carica papaya HOM05D007627 ORTHO05D009640 8.8e-15 83.6 71 60.6
Medtr7g007290 Medicago truncatula HOM05D007627 ORTHO05D009640 8.8e-15 83.6 84 54.8
Ca_04047_v3 Cicer arietinum L. HOM05D007627 ORTHO05D009640 1.5e-14 82.8 85 58.8
Migut.B01085 Erythranthe guttata HOM05D007627 ORTHO05D009640 1.5e-14 82.8 90 53.3
Gohir.D11G114900 Gossypium hirsutum HOM05D007627 ORTHO05D009640 1.5e-14 82.8 81 61.7
Gorai.007G123100 Gossypium raimondii HOM05D007627 ORTHO05D009640 1.5e-14 82.8 81 61.7
Actinidia25845 Actinidia chinensis HOM05D007627 ORTHO05D009640 2.5e-14 82.0 76 57.9
Hma1.2p1_0212F.1_g089970 Hydrangea macrophylla HOM05D007627 ORTHO05D009640 2.5e-14 82.0 79 59.5
Gohir.A11G109700 Gossypium hirsutum HOM05D007627 ORTHO05D009640 4.3e-14 81.3 81 60.5
Oeu038438.1 Olea europaea HOM05D007627 ORTHO05D009640 4.3e-14 81.3 88 52.3
COL.COLO4_23238 Corchorus olitorius HOM05D007627 ORTHO05D009640 9.7e-14 80.1 81 59.3
Dinv10091 Davidia involucrata HOM05D007627 ORTHO05D009640 9.7e-14 80.1 75 60.0
Duzib192G0243 Durio zibethinus HOM05D007627 ORTHO05D009640 9.7e-14 80.1 95 55.8
Sc17g0000480 Simmondsia chinensis HOM05D007627 ORTHO05D009640 9.7e-14 80.1 76 56.6
Sabra14G0090000 Salix brachista HOM05D007627 ORTHO05D009640 1.3e-13 79.7 74 64.9
Ah.10g033580 Amaranthus hybridus HOM05D004014 ORTHO05D005890 1.7e-13 79.3 75 56.0
ECA248G3246 Erigeron canadensis HOM05D007627 ORTHO05D009640 1.7e-13 79.3 82 54.9
DCAR_005763 Daucus carota HOM05D000361 ORTHO05D005006 2.2e-13 79.0 74 59.5
HanXRQChr01g0000791 Helianthus annuus HOM05D007627 ORTHO05D009640 3.7e-13 78.2 88 51.1
Lj1g0016177 Lotus japonicus HOM05D007627 ORTHO05D009640 4.8e-13 77.8 84 54.8
AUR62044233 Chenopodium quinoa HOM05D007627 ORTHO05D009640 1.1e-12 76.6 76 55.3
TPR.G35989 Trifolium pratense HOM05D007627 ORTHO05D009640 1.1e-12 76.6 84 54.8
HanXRQChr11g0329361 Helianthus annuus HOM05D007627 ORTHO05D009640 1.4e-12 76.3 76 59.2
Zm00001eb228130 Zea mays HOM05D007627 ORTHO05D009640 1.4e-12 76.3 88 51.1
AUR62037635 Chenopodium quinoa HOM05D007627 ORTHO05D009640 1.8e-12 75.9 78 56.4
Os06g0717300 Oryza sativa ssp. japonica HOM05D007627 ORTHO05D009640 9.1e-12 73.6 91 52.7
Aa31LG2G19210 Aethionema arabicum HOM05D007627 ORTHO05D009640 2.0e-11 72.4 82 52.4
unitig_578.g15942 Utricularia gibba HOM05D007627 ORTHO05D009640 2.6e-11 72.0 94 45.7
Psat3g205400 Pisum sativum HOM05D007627 ORTHO05D009640 5.9e-11 70.9 85 50.6
HPP92_022749 Vanilla planifolia HOM05D007627 ORTHO05D009640 5.9e-11 70.9 84 51.2
EL10Ac2g03554 Beta vulgaris HOM05D007627 ORTHO05D009640 2.9e-10 68.6 76 52.6
Thhalv10011898m.g Eutrema salsugineum HOM05D007627 ORTHO05D009640 3.8e-10 68.2 80 48.8
BcaC08g42976 Brassica carinata HOM05D007627 ORTHO05D009640 5.0e-10 67.8 92 48.9
CARHR037420 Cardamine hirsuta HOM05D007627 ORTHO05D009640 1.4e-09 66.2 80 48.8
BcaB07g33814 Brassica carinata HOM05D007627 ORTHO05D009640 3.2e-09 65.1 92 46.7
Lsat_1_v5_gn_5_191420 Lactuca sativa HOM05D007627 ORTHO05D009640 5.5e-09 64.3 80 55.0
Aqoxy1G00002 Aquilegia oxysepala HOM05D007627 ORTHO05D009640 2.1e-08 62.4 74 48.6
THA.LOC104824213 Tarenaya hassleriana HOM05D007627 ORTHO05D009640 3.6e-08 61.6 91 45.1
Sp1g34810 Schrenkiella parvula HOM05D007627 ORTHO05D009640 4.7e-08 61.2 91 45.1
CDE04G1409 Ceratophyllum demersum HOM05D000443 ORTHO05D001066 3.9e-07 58.2 61 52.5
ATR0807G116 Amborella trichopoda HOM05D007627 ORTHO05D009640 2.0e-06 55.8 85 40.0
Medtr7g007300 Medicago truncatula HOM05D000007 ORTHO05D000017 4.4e-06 54.7 56 53.6
SHI28956 Sapria himalayana HOM05D000002 ORTHO05D000001 4.4e-06 54.7 62 41.9
PSO700G0179 Papaver somniferum HOM05D007627 ORTHO05D009640 7.4e-06 53.9 84 45.2


User provided reference genes

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